Neil D. Rawlings

22 papers Journal 22
YearRankTypeTitle / Venue / Authors
2019 J jnl
Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes.
Nucleic Acids Res.
Lorna J. Richardson, Neil D. Rawlings, Gustavo A. Salazar, Alexandre Almeida, David Haft, Gregory Ducq, Granger G. Sutton, Robert D. Finn
2019 J jnl
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Nucleic Acids Res.
Alex L. Mitchell, Teresa K. Attwood, Patricia C. Babbitt, Matthias Blum, Peer Bork, Alan J. Bridge, Shoshana D. Brown, Hsin-Yu Chang, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft, Hongzhan Huang, Ivica Letunic, Rodrigo Lopez, Aurelien Luciani, Fábio Madeira, Aron Marchler-Bauer, Huaiyu Mi, Darren A. Natale, Marco Necci, Gift Nuka, Christine A. Orengo, Arun Prasad Pandurangan, Typhaine Paysan-Lafosse, Sebastien Pesseat, Simon C. Potter, Matloob Qureshi, Neil D. Rawlings, Nicole Redaschi, Lorna J. Richardson, Catherine Rivoire, Gustavo A. Salazar, Amaia Sangrador-Vegas, Christian J. A. Sigrist, Ian Sillitoe, Granger G. Sutton, Narmada Thanki, Paul D. Thomas, Silvio C. E. Tosatto, Siew-Yit Yong, Robert D. Finn
2019 J jnl
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.
Briefings Bioinform.
Fuyi Li, Yanan Wang, Chen Li, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song
2019 J jnl
iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites.
Briefings Bioinform.
Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo-Chen Chou
2018 J jnl
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database.
Nucleic Acids Res.
Neil D. Rawlings, Alan J. Barrett, Paul D. Thomas, Xiaosong Huang, Alex Bateman, Robert D. Finn
2017 J jnl
InterPro in 2017 - beyond protein family and domain annotations.
Nucleic Acids Res.
Robert D. Finn, Teresa K. Attwood, Patricia C. Babbitt, Alex Bateman, Peer Bork, Alan J. Bridge, Hsin-Yu Chang, Zsuzsanna Dosztányi, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft, Gemma L. Holliday, Hongzhan Huang, Xiaosong Huang, Ivica Letunic, Rodrigo Lopez, Shennan Lu, Aron Marchler-Bauer, Huaiyu Mi, Jaina Mistry, Darren A. Natale, Marco Necci, Gift Nuka, Christine A. Orengo, Young Mi Park, Sebastien Pesseat, Damiano Piovesan, Simon C. Potter, Neil D. Rawlings, Nicole Redaschi, Lorna J. Richardson, Catherine Rivoire, Amaia Sangrador-Vegas, Christian J. A. Sigrist, Ian Sillitoe, Ben Smithers, Silvano Squizzato, Granger G. Sutton, Narmada Thanki, Paul D. Thomas, Silvio C. E. Tosatto, Cathy H. Wu, Ioannis Xenarios, Lai-Su L. Yeh, Siew-Yit Yong, Alex L. Mitchell
2016 J jnl
Twenty years of the
Nucleic Acids Res.
Neil D. Rawlings, Alan J. Barrett, Robert D. Finn
2015 J jnl
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
Database J. Biol. Databases Curation
Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend
2014 J jnl
New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily.
BMC Bioinform.
Christine B. Trame, Yuanyuan Chang, Herbert L. Axelrod, Ruth Y. Eberhardt, Penelope Coggill, Marco Punta, Neil D. Rawlings
2014 J jnl
Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis.
BMC Bioinform.
Debanu Das, Alexey G. Murzin, Neil D. Rawlings, Robert D. Finn, Penelope Coggill, Alex Bateman, Adam Godzik, L. Aravind
2013 J jnl
Identification and prioritization of novel uncharacterized peptidases for biochemical characterization.
Database J. Biol. Databases Curation
Neil D. Rawlings
2013 J jnl
LUD, a new protein domain associated with lactate utilization.
BMC Bioinform.
William C. Hwang, Constantina Bakolitsa, Marco Punta, Penelope Coggill, Alex Bateman, Herbert L. Axelrod, Neil D. Rawlings, Mayya Sedova, Scott N. Peterson, Ruth Y. Eberhardt, L. Aravind, Jaime Pascual, Adam Godzik
2010 J jnl
MEROPS: the peptidase database.
Nucleic Acids Res.
Neil D. Rawlings, Alan J. Barrett, Alex Bateman
2009 J jnl
A large and accurate collection of peptidase cleavages in the
Database J. Biol. Databases Curation
Neil D. Rawlings
2008 J jnl
MEROPS: the peptidase database.
Nucleic Acids Res.
Neil D. Rawlings, Fraser R. Morton, Chai Yin Kok, Jun Kong, Alan J. Barrett
2006 J jnl
MEROPS: the peptidase database.
Nucleic Acids Res.
Neil D. Rawlings, Fraser R. Morton, Alan J. Barrett
2004 J jnl
MEROPS: the peptidase database.
Nucleic Acids Res.
Neil D. Rawlings, Dominic P. Tolle, Alan J. Barrett
2003 J jnl
A comparison of Pfam and MEROPS: Two databases, one comprehensive, and one specialised.
BMC Bioinform.
David J. Studholme, Neil D. Rawlings, Alan J. Barrett, Alex Bateman
2002 J jnl
MEROPS: the protease database.
Nucleic Acids Res.
Neil D. Rawlings, Emmet A. O'Brien, Alan J. Barrett
2000 J jnl
MEROPS: the peptidase database.
Nucleic Acids Res.
Neil D. Rawlings, Alan J. Barrett
1999 J jnl
MEROPS: the peptidase database.
Nucleic Acids Res.
Neil D. Rawlings, Alan J. Barrett
1990 J jnl
FLUSYS: a software package for the collection and analysis of kinetic and scanning data from Perkin-Elmer fluorimeters.
Comput. Appl. Biosci.
Neil D. Rawlings, Alan J. Barrett