Negin Forouzesh

14 papers Journal 4Unranked 9

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Multi-Objective Loss Function For Free Energy Calculations. BCB Libina Bovan Thomas, Ali Risheh, Negin Forouzesh
2025	—	`conf`	Physics-Guided Active Learning for New Ligand Discovery. BCB Companion Nikhil Dhiman, Dikshant Sagar, Negin Forouzesh
2024	J	`jnl`	Molecular Docking Improved with Human Spatial Perception Using Virtual Reality. IEEE Trans. Vis. Comput. Graph. Shivam Mishra, Missael Corro-Flores, David Krum, Negin Forouzesh
2024	J	`jnl`	Optimal Dielectric Boundary for Binding Free Energy Estimates in the Implicit Solvent. J. Chem. Inf. Model. Negin Forouzesh, Fatemeh Ghafouri, Igor S. Tolokh, Alexey V. Onufriev
2023	J	`jnl`	AmberTools. J. Chem. Inf. Model. David A. Case, Hasan Metin Aktulga, Kellon Belfon, David S. Cerutti, G. Andrés Cisneros, Vinícius Wilian D. Cruzeiro, Negin Forouzesh, Timothy J. Giese, Andreas W. Götz, Holger Gohlke, Saeed Izadi, Koushik Kasavajhala, Mehmet Cagri Kaymak, Edward King, Tom Kurtzman, Tai-Sung Lee, Pengfei Li, Jian Liu, Tyler Luchko, Ray Luo, Madushanka Manathunga, Matías R. Machado, Hai Minh Nguyen, Kurt A. O'Hearn, Alexey V. Onufriev, Feng Pan, Sergio Pantano, Ruxi Qi, Ali Rahnamoun, Ali Risheh, Stephan Schott-Verdugo, Akhil Shajan, Jason M. Swails, Junmei Wang, Haixin Wei, Xiongwu Wu, Yongxian Wu, Shi Zhang, Shiji Zhao, Qiang Zhu, Thomas E. Cheatham, Daniel R. Roe, Adrian E. Roitberg, Carlos Simmerling, Darrin M. York, Maria C. Nagan, Kenneth M. Merz Jr.
2023	—	`conf`	Physics-Guided Deep Generative Model For New Ligand Discovery. BCB Dikshant Sagar, Ali Risheh, Nida Sheikh, Negin Forouzesh
2022	—	`conf`	Calculating the Binding Entropy of Host-Guest Systems with Physics-Guided Neural Networks. BIBM Alles Rebel, Ali Risheh, Negin Massoudian, Negin Forouzesh
2022	—	`conf`	Low Data Image Analysis with a Generative Adversarial Network: A Case Study on Women Pelvic MRI Scans. BIBM Sabino Ramirez, Mathias Brieu, Negin Forouzesh
2021	—	`conf`	Analysis of Macular Thickness Deviation Maps for Diagnosis of Glaucoma. ISVC (2) Bingnan Zhou, Farnaz Mohammadi, Jung Soo Lim, Negin Forouzesh, Hassan Ghasemzadeh, Navid Amini
2021	—	`conf`	Calculation of Protein-Ligand Binding Free Energy Using a Physics-Guided Neural Network. BIBM Sahar Cain, Ali Risheh, Negin Forouzesh
2020	—	`—`	Efficient Biomolecular Computations Towards Applications in Drug Discovery. Negin Forouzesh
2020	—	`conf`	Robustness of Multidimensional Optimization Outcomes: A General Approach and a Case Study. SpringSim Negin Forouzesh, Layne T. Watson, Alexey V. Onufriev
2017	J	`jnl`	Grid-Based Surface Generalized Born Model for Calculation of Electrostatic Binding Free Energies. J. Chem. Inf. Model. Negin Forouzesh, Saeed Izadi, Alexey V. Onufriev
2014	—	`conf`	Structure-Based Analysis of Protein Binding Pockets Using Von Neumann Entropy. ISBRA Negin Forouzesh, Mohammad Reza Kazemi, Ali Mohades