Neda Bagheri

13 papers C 1Journal 11
YearRankTypeTitle / Venue / Authors
2024 J jnl
Incorporating temporal information during feature engineering bolsters emulation of spatio-temporal emergence.
Bioinform.
Jason Y. Cain, Jacob I. Evarts, Jessica S. Yu, Neda Bagheri
2024 J jnl
Model design choices impact biological insight: Unpacking the broad landscape of spatial-temporal model development decisions.
PLoS Comput. Biol.
Jessica S. Yu, Neda Bagheri
2022 J jnl
Perfect t-codes in Cayley graphs of groups.
Discret. Math. Algorithms Appl.
Neda Bagheri, Ali Asghar Talebi Rostami
2020 J jnl
Fly-QMA: Automated analysis of mosaic imaginal discs in Drosophila.
PLoS Comput. Biol.
Sebastian M. Bernasek, Nicolás Peláez, Richard W. Carthew, Neda Bagheri, Luis A. Nunes Amaral
2019 J jnl
DUETT quantitatively identifies known and novel events in nascent RNA structural dynamics from chemical probing data.
Bioinform.
Albert Y. Xue, Angela M. Yu, Julius B. Lucks, Neda Bagheri
2019 J jnl
Hybrid analysis of gene dynamics predicts context-specific expression and offers regulatory insights.
Bioinform.
Justin D. Finkle, Neda Bagheri
2019 J jnl
Network inference performance complexity: a consequence of topological, experimental and algorithmic determinants.
Bioinform.
Joseph J. Muldoon, Jessica S. Yu, Mohammad-Kasim Fassia, Neda Bagheri
2011 J jnl
A Dynamical Systems Model for Combinatorial Cancer Therapy Enhances Oncolytic Adenovirus Efficacy by MEK-Inhibition.
PLoS Comput. Biol.
Neda Bagheri, Marisa Shiina, Douglas A. Lauffenburger, W. Michael Korn
2009 — ch.
Automatic Control in Systems Biology.
Handbook of Automation
Henry Mirsky, Jörg Stelling, Rudiyanto Gunawan, Neda Bagheri, Stephanie R. Taylor, Eric Kwei, Jason E. Shoemaker, Francis J. Doyle III
2008 J jnl
Circadian Phase Resetting via Single and Multiple Control Targets.
PLoS Comput. Biol.
Neda Bagheri, Jörg Stelling, Francis J. Doyle III
2007 J jnl
Quantitative performance metrics for robustness in circadian rhythms.
Bioinform.
Neda Bagheri, Jörg Stelling, Francis J. Doyle III
2006 J jnl
Circadian rhythm: A natural, robust, multi-scale control system.
Comput. Chem. Eng.
Francis J. Doyle III, Rudiyanto Gunawan, Neda Bagheri, Henry Mirsky, Tsz Leung To
2005 C conf
Optimal phase-tracking of the nonlinear circadian oscillator.
ACC
Neda Bagheri, Jörg Stelling, Francis J. Doyle