Naying He

15 papers Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
NeuroImage
Haiying Lyu, Naying He, Bo Wu, Paula Trujillo, Fuhua Yan, Yong Lu, E. Mark Haacke
2025 J jnl
NeuroImage
Mariyemuguli Reheman, Sagar Buch, Naying He, Pei Huang, Qiurong Yu, Xinhui Wang, Yu Liu, Youmin Zhang, Zhijia Jin, Yan Li, Peng Liu, Shengdi Chen, E. Mark Haacke, Fuhua Yan
2024 J jnl
NeuroImage
Puyu Li, Xinyi Zhou, Ningdi Luo, Ruinan Shen, Xue Zhu, Min Zhong, Sijia Huang, Naying He, Haiying Lyu, Yufei Huang, Qianyi Yin, Liche Zhou, Yong Lu, Yuyan Tan, Jun Liu
2024 J jnl
NeuroImage
Qiuyun Xu, Yongsheng Chen, Stephan Miller, Kunal Bajaj, Jairo Santana, Mohamed Badawy, Haiying Lyu, Yu Liu, Naying He, Fuhua Yan, E. Mark Haacke
2024 J jnl
NeuroImage
Peng Liu, Xinhui Wang, Youmin Zhang, Pei Huang, Zhijia Jin, Zenghui Cheng, Yongsheng Chen, Qiuyun Xu, Kiarash Ghassaban, Yu Liu, Shengdi Chen, Naying He, Fuhua Yan, E. Mark Haacke
2023 J jnl
NeuroImage
Mojtaba Jokar, Zhijia Jin, Pei Huang, Ying Wang, Youmin Zhang, Yan Li, Zenghui Cheng, Yu Liu, Rongbiao Tang, Xiaofeng Shi, Jihua Min, Fangtao Liu, Shengdi Chen, Naying He, E. Mark Haacke, Fuhua Yan
2022 J jnl
NeuroImage
Chunguang Chu, Naying He, Kristina Zeljic, Zhen Zhang, Jiang Wang, Jun Li, Yu Liu, Youmin Zhang, Bomin Sun, Dianyou Li, Fuhua Yan, Chencheng Zhang, Chen Liu
2021 J jnl
NeuroImage
Naying He, Kiarash Ghassaban, Pei Huang, Mojtaba Jokar, Ying Wang, Zenghui Cheng, Zhijia Jin, Yan Li, Sean K. Sethi, Yixi He, Yongsheng Chen, Sara Gharabaghi, Shengdi Chen, Fuhua Yan, E. Mark Haacke
2020 conf
MLMI@MICCAI
Bin Xiao, Naying He, Qian Wang, Zhong Xue, Lei Chen, Fuhua Yan, Feng Shi, Dinggang Shen
2020 J jnl
NeuroImage
Yu Liu, Junchen Li, Naying He, Yongsheng Chen, Zhijia Jin, Fuhua Yan, E. Mark Haacke
2018 J jnl
NeuroImage
Yuyao Zhang, Hongjiang Wei, Matthew J. Cronin, Naying He, Fuhua Yan, Chunlei Liu
2018 J jnl
Int. J. Neural Syst.
Lin Cheng, Yang Zhu, Junfeng Sun, Lifu Deng, Naying He, Yang Yang, Huawei Ling, Hasan Ayaz, Yi Fu, Shanbao Tong
2017 J jnl
NeuroImage
Mark Mikkelsen, Peter B. Barker, Pallab K. Bhattacharyya, Maiken K. Brix, Pieter F. Buur, Kim M. Cecil, Kimberly L. Chan, David Y.-T. Chen, Alexander R. Craven, Koen Cuypers, Michael Dacko, Niall W. Duncan, Ulrike Dydak, David A. Edmondson, Gabriele Ende, Lars Ersland, Fei Gao, Ian Greenhouse, Ashley D. Harris, Naying He, Stefanie Heba, Nigel Hoggard, Tun-Wei Hsu, Jacobus F. A. Jansen, Alayar Kangarlu, Thomas Lange, R. Marc Lebel, Yan Li, Chien-Yuan Lin, Jy-Kang Liou, Jiing-Feng Lirng, Feng Liu, Ruoyun Ma, Celine Maes, Marta Moreno-Ortega, Scott O. Murray, Sean Noah, Ralph Noeske, Michael D. Noseworthy, Georg Oeltzschner, James J. Prisciandaro, Nicolaas A. J. Puts, Timothy P. L. Roberts, Markus Sack, Napapon Sailasuta, Muhammad G. Saleh, Michael-Paul Schallmo, Nicholas Simard, Stephan P. Swinnen, Martin Tegenthoff, Peter Truong, Guangbin Wang, Iain D. Wilkinson, Hans-Jörg Wittsack, Hongmin Xu, Fuhua Yan, Chencheng Zhang, Vadim Zipunnikov, Helge J. Zöllner, Richard A. E. Edden
2017 J jnl
Comput. Math. Methods Medicine
Yang Zhu, Lin Cheng, Naying He, Yang Yang, Huawei Ling, Hasan Ayaz, Shanbao Tong, Junfeng Sun, Yi Fu
2017 conf
EMBC
Lin Cheng, Hong Zhu, Yang Zhu, Naying He, Yang Yang, Huawei Ling, Shanbao Tong, Yi Fu, Junfeng Sun
tests/conftest.py
← Index tests/conftest.py python
"""
Pytest configuration and shared fixtures for REDB unit tests.
"""
import os
import sys
import pytest
import logging
import tempfile
import hashlib
from unittest.mock import Mock, MagicMock, patch
from pathlib import Path

# Add the project root to the path
sys.path.insert(0, str(Path(__file__).parent.parent))

# Test files directory
TEST_FILES_DIR = Path(__file__).parent.parent / "test_files"


# ============================================================================
# Logger Fixtures
# ============================================================================

@pytest.fixture
def mock_logger():
    """Create a mock logger for testing."""
    logger = Mock()
    logger.debug = Mock()
    logger.info = Mock()
    logger.warning = Mock()
    logger.error = Mock()
    return logger


@pytest.fixture
def real_logger():
    """Create a real logger for testing with debug output."""
    logger = logging.getLogger("test_logger")
    logger.setLevel(logging.DEBUG)
    if not logger.handlers:
        handler = logging.StreamHandler()
        handler.setLevel(logging.DEBUG)
        formatter = logging.Formatter('%(levelname)s - %(message)s')
        handler.setFormatter(formatter)
        logger.addHandler(handler)
    return logger


# ============================================================================
# Test Binary Files Fixtures
# ============================================================================

@pytest.fixture
def elf_binary_path():
    """Path to the ELF test binary."""
    path = TEST_FILES_DIR / "hello"
    if not path.exists():
        pytest.skip(f"Test file not found: {path}")
    return str(path)


@pytest.fixture
def elf_advanced_binary_path():
    """Path to the advanced ELF test binary."""
    path = TEST_FILES_DIR / "hello_advanced"
    if not path.exists():
        pytest.skip(f"Test file not found: {path}")
    return str(path)


@pytest.fixture
def pe_binary_path():
    """Path to the PE test binary (.NET PE)."""
    path = TEST_FILES_DIR / "d8637bdbcfc9112fcb1f0167b398e771"
    if not path.exists():
        pytest.skip(f"Test file not found: {path}")
    return str(path)


@pytest.fixture
def elf_binary_content(elf_binary_path):
    """Read the ELF test binary content."""
    with open(elf_binary_path, "rb") as f:
        return f.read()


@pytest.fixture
def pe_binary_content(pe_binary_path):
    """Read the PE test binary content."""
    with open(pe_binary_path, "rb") as f:
        return f.read()


# ============================================================================
# Temporary Files Fixtures
# ============================================================================

@pytest.fixture
def temp_binary_file():
    """Create a temporary binary file for testing."""
    with tempfile.NamedTemporaryFile(delete=False, suffix=".bin") as f:
        # Write some test data
        f.write(b"\x7fELF" + b"\x00" * 100 + b"test data")
        temp_path = f.name

    yield temp_path

    # Cleanup
    if os.path.exists(temp_path):
        os.unlink(temp_path)


@pytest.fixture
def temp_text_file():
    """Create a temporary text file for testing."""
    with tempfile.NamedTemporaryFile(delete=False, suffix=".txt", mode="w") as f:
        f.write("This is a test file with some text content.")
        temp_path = f.name

    yield temp_path

    # Cleanup
    if os.path.exists(temp_path):
        os.unlink(temp_path)


@pytest.fixture
def temp_pe_like_file():
    """Create a temporary file with PE-like header for testing."""
    with tempfile.NamedTemporaryFile(delete=False, suffix=".exe") as f:
        # MZ header
        f.write(b"MZ" + b"\x00" * 58)
        # e_lfanew pointing to PE header at offset 64
        f.write(b"\x40\x00\x00\x00")
        # PE signature at offset 64
        f.write(b"PE\x00\x00")
        # Minimal COFF header (20 bytes)
        f.write(b"\x4c\x01")  # Machine (i386)
        f.write(b"\x01\x00")  # NumberOfSections
        f.write(b"\x00" * 16)  # Rest of COFF header
        temp_path = f.name

    yield temp_path

    # Cleanup
    if os.path.exists(temp_path):
        os.unlink(temp_path)


# ============================================================================
# Mock Exporter Fixtures
# ============================================================================

@pytest.fixture
def mock_print_exporter(mock_logger):
    """Create a mock PrintExporter."""
    from redb.extractors.database_exporters import PrintExporter
    exporter = PrintExporter(mock_logger, "test_index")
    return exporter


@pytest.fixture
def mock_elasticsearch_exporter(mock_logger):
    """Create a mock ElasticsearchExporter with mocked client."""
    with patch('redb.settings.get_elasticsearch_client') as mock_client:
        mock_client.return_value = Mock()
        from redb.extractors.database_exporters import ElasticsearchExporter
        exporter = ElasticsearchExporter(mock_logger, "test_index")
        return exporter


@pytest.fixture
def mock_clickhouse_exporter(mock_logger):
    """Create a mock ClickHouseExporter with mocked client."""
    with patch('redb.settings.create_clickhouse_client') as mock_client:
        mock_client.return_value = Mock()
        from redb.extractors.database_exporters import ClickHouseExporter
        exporter = ClickHouseExporter(mock_logger, "test_index", client=Mock())
        return exporter


# ============================================================================
# Mock Settings Fixtures
# ============================================================================

@pytest.fixture
def mock_settings():
    """Mock the redb.settings module."""
    with patch.multiple(
        'redb.settings',
        ELASTIC_BINARIES_COLLECTION="test_collection",
        get_elasticsearch_client=Mock(return_value=Mock()),
        create_clickhouse_client=Mock(return_value=Mock()),
    ):
        yield


# ============================================================================
# Hash Fixtures
# ============================================================================

@pytest.fixture
def known_hashes(elf_binary_content):
    """Compute known hashes for the ELF test binary."""
    return {
        'md5': hashlib.md5(elf_binary_content).hexdigest(),
        'sha1': hashlib.sha1(elf_binary_content).hexdigest(),
        'sha256': hashlib.sha256(elf_binary_content).hexdigest(),
    }


@pytest.fixture
def pe_known_hashes(pe_binary_content):
    """Compute known hashes for the PE test binary."""
    return {
        'md5': hashlib.md5(pe_binary_content).hexdigest(),
        'sha1': hashlib.sha1(pe_binary_content).hexdigest(),
        'sha256': hashlib.sha256(pe_binary_content).hexdigest(),
    }


# ============================================================================
# Sample Data Fixtures
# ============================================================================

@pytest.fixture
def sample_binary_data():
    """Sample binary data for entropy and hash testing."""
    return b"\x00\x01\x02\x03\x04\x05\x06\x07\x08\x09\x0a\x0b\x0c\x0d\x0e\x0f" * 16


@pytest.fixture
def high_entropy_data():
    """High entropy random-like data for testing."""
    import random
    random.seed(42)  # Reproducible
    return bytes(random.randint(0, 255) for _ in range(256))


@pytest.fixture
def low_entropy_data():
    """Low entropy repetitive data for testing."""
    return b"\x00" * 256


# ============================================================================
# PE Object Fixtures
# ============================================================================

@pytest.fixture
def pe_object(pe_binary_path):
    """Create a pefile PE object for testing."""
    import pefile
    try:
        pe = pefile.PE(pe_binary_path)
        yield pe
        pe.close()
    except Exception as e:
        pytest.skip(f"Failed to parse PE file: {e}")


# ============================================================================
# ELF Object Fixtures
# ============================================================================

@pytest.fixture
def elf_object(elf_binary_path):
    """Create an ELFFile object for testing."""
    from elftools.elf.elffile import ELFFile
    try:
        with open(elf_binary_path, 'rb') as f:
            elf = ELFFile(f)
            # We need to keep the file open for ELFFile to work
            yield elf
    except Exception as e:
        pytest.skip(f"Failed to parse ELF file: {e}")


# ============================================================================
# Dataclass Fixtures
# ============================================================================

@pytest.fixture
def sample_hash_dataclass():
    """Create a sample Hash dataclass."""
    from redb.models.dataclasses import Hash
    return Hash(
        md5="d41d8cd98f00b204e9800998ecf8427e",
        sha1="da39a3ee5e6b4b0d3255bfef95601890afd80709",
        sha256="e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855"
    )


@pytest.fixture
def sample_hashes_dataclass():
    """Create a sample Hashes dataclass."""
    from redb.models.dataclasses import Hashes
    return Hashes(
        md5="d41d8cd98f00b204e9800998ecf8427e",
        sha1="da39a3ee5e6b4b0d3255bfef95601890afd80709",
        sha256="e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855",
        ssdeep_hash="3::",
        tlsh_hash=""
    )


@pytest.fixture
def sample_basic_properties():
    """Create a sample BasicProperties dataclass."""
    from redb.models.dataclasses import BasicProperties
    return BasicProperties(
        filename="test.exe",
        sample_name="test.exe",
        filesize=1024,
        filetype="PE32 executable",
        filetype_mime="application/x-dosexec",
        filetype_magika="pebin",
        file_entropy=6.5
    )


# ============================================================================
# Utility Functions for Tests
# ============================================================================

def compute_entropy(data):
    """Compute entropy of data for verification in tests."""
    import math
    from collections import Counter

    if not data:
        return 0.0

    if isinstance(data, str):
        counts = Counter(data)
        frequencies = (i / len(data) for i in counts.values())
        return -sum(f * math.log(f, 2) for f in frequencies)
    else:
        occurrences = Counter(bytearray(data))
        entropy = 0
        for x in occurrences.values():
            p_x = float(x) / len(data)
            entropy -= p_x * math.log(p_x, 2)
        return entropy


# Make the function available as a fixture
@pytest.fixture
def entropy_calculator():
    """Return the entropy calculation function."""
    return compute_entropy


# ============================================================================
# Skip Markers
# ============================================================================

# Mark tests that require external tools
requires_die = pytest.mark.skipif(
    not os.path.exists("/usr/bin/diec") and not os.path.exists("/usr/local/bin/diec"),
    reason="Detect It Easy (diec) not installed"
)

requires_capa = pytest.mark.skipif(
    not os.path.exists("/usr/bin/capa") and not os.path.exists("/usr/local/bin/capa"),
    reason="capa not installed"
)

requires_floss = pytest.mark.skipif(
    not os.path.exists("/usr/bin/floss") and not os.path.exists("/usr/local/bin/floss"),
    reason="floss not installed"
)