Navid Alemi Koohbanani

30 papers Journal 19Unranked 10

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Immune subtyping of melanoma whole slide images using multiple instance learning. Medical Image Anal. Lucy Godson, Navid Alemi Koohbanani, Jeremie Nsengimana, Graham P. Cook, Emily L. Clarke, Darren Treanor, D. Timothy Bishop, Julia Newton-Bishop, Ali Gooya, Derek R. Magee
2024	J	`jnl`	LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. IEEE J. Biomed. Health Informatics Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Shenghua Cheng, Jiabo Ma, John Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan-E-Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Xiuli Liu, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi
2023	J	`jnl`	LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. CoRR Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Jiabo Ma, Jiamei Sun, Johnathon Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan E Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Thomas Watson, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi
2023	—	`conf`	Multi-level Graph Representations of Melanoma Whole Slide Images for Identifying Immune Subgroups. GRAIL/OCELOT@MICCAI Lucy Godson, Navid Alemi Koohbanani, Jeremie Nsengimana, Graham P. Cook, Emily L. Clarke, Darren Treanor, D. Timothy Bishop, Julia Newton-Bishop, Derek R. Magee
2022	—	`conf`	Weakly-supervised learning for image-based classification of primary melanomas into genomic immune subgroups. MIDL Lucy Godson, Navid Alemi Koohbanani, Jeremie Nsengimana, Graham P. Cook, Emily L. Clarke, Darren Treanor, D. Timothy Bishop, Julia Newton-Bishop, Ali Gooya
2022	J	`jnl`	Weakly-supervised learning for image-based classification of primary melanomas into genomic immune subgroups. CoRR Lucy Godson, Navid Alemi Koohbanani, Jeremie Nsengimana, Graham P. Cook, Emily L. Clarke, Darren Treanor, D. Timothy Bishop, Julia Newton-Bishop, Ali Gooya
2021	—	`conf`	A Novel Cell Map Representation for Weakly Supervised Prediction of ER & PR Status from H&E WSIs. COMPAY@MICCAI Hammam M. AlGhamdia, Navid Alemi Koohbanani, Nasir M. Rajpoot, Shan E Ahmed Raza
2021	—	`conf`	Robust Interactive Semantic Segmentation of Pathology Images with Minimal User Input. ICCVW Mostafa Jahanifar, Neda Zamani Tajeddin, Navid Alemi Koohbanani, Nasir M. Rajpoot
2021	J	`jnl`	Robust Interactive Semantic Segmentation of Pathology Images with Minimal User Input. CoRR Mostafa Jahanifar, Neda Zamani Tajeddin, Navid Alemi Koohbanani, Nasir M. Rajpoot
2021	J	`jnl`	Self-Path: Self-Supervision for Classification of Pathology Images With Limited Annotations. IEEE Trans. Medical Imaging Navid Alemi Koohbanani, Balagopal Unnikrishnan, Syed Ali Khurram, Pavitra Krishnaswamy, Nasir M. Rajpoot
2020	J	`jnl`	A Multi-Organ Nucleus Segmentation Challenge. IEEE Trans. Medical Imaging Neeraj Kumar, Ruchika Verma, Deepak Anand, Yanning Zhou, Omer Fahri Onder, Efstratios Tsougenis, Hao Chen, Pheng-Ann Heng, Jiahui Li, Zhiqiang Hu, Yunzhi Wang, Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajeddin, Ali Gooya, Nasir M. Rajpoot, Xuhua Ren, Sihang Zhou, Qian Wang, Dinggang Shen, Cheng-Kun Yang, Chi-Hung Weng, Wei-Hsiang Yu, Chao-Yuan Yeh, Shuang Yang, Shuoyu Xu, Pak-Hei Yeung, Peng Sun, Amirreza Mahbod, Gerald Schaefer, Isabella Ellinger, Rupert Ecker, Örjan Smedby, Chunliang Wang, Benjamin Chidester, That-Vinh Ton, Minh-Triet Tran, Jian Ma, Minh N. Do, Simon Graham, Quoc Dang Vu, Jin Tae Kwak, Akshaykumar Gunda, Raviteja Chunduri, Corey Hu, Xiaoyang Zhou, Dariush Lotfi, Reza Safdari, Antanas Kascenas, Alison O'Neil, Dennis Eschweiler, Johannes Stegmaier, Yanping Cui, Baocai Yin, Kailin Chen, Xinmei Tian, Philipp Grüning, Erhardt Barth, Elad Arbel, Itay Remer, Amir Ben-Dor, Ekaterina Sirazitdinova, Matthias Kohl, Stefan Braunewell, Yuexiang Li, Xinpeng Xie, Linlin Shen, Jun Ma, Krishanu Das Baksi, Mohammad Azam Khan, Jaegul Choo, Adrián Colomer, Valery Naranjo, Linmin Pei, Khan M. Iftekharuddin, Kaushiki Roy, Debotosh Bhattacharjee, Aníbal Pedraza, Maria Gloria Bueno, Sabarinathan Devanathan, Saravanan Radhakrishnan, Praveen Koduganty, Zihan Wu, Guanyu Cai, Xiaojie Liu, Yuqin Wang, Amit Sethi
2020	J	`jnl`	Cellular community detection for tissue phenotyping in colorectal cancer histology images. Medical Image Anal. Sajid Javed, Arif Mahmood, Muhammad Moazam Fraz, Navid Alemi Koohbanani, Ksenija Benes, Yee-Wah Tsang, Katherine Hewitt, David B. A. Epstein, David R. J. Snead, Nasir M. Rajpoot
2020	J	`jnl`	Multi-Task Learning in Histo-pathology for Widely Generalizable Model. CoRR Jevgenij Gamper, Navid Alemi Koohbanani, Nasir M. Rajpoot
2020	J	`jnl`	NuClick: A Deep Learning Framework for Interactive Segmentation of Microscopy Images. CoRR Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajadin, Nasir M. Rajpoot
2020	J	`jnl`	NuClick: A deep learning framework for interactive segmentation of microscopic images. Medical Image Anal. Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajadin, Nasir M. Rajpoot
2020	J	`jnl`	PanNuke Dataset Extension, Insights and Baselines. CoRR Jevgenij Gamper, Navid Alemi Koohbanani, Simon Graham, Mostafa Jahanifar, Syed Ali Khurram, Ayesha Azam, Katherine Hewitt, Nasir M. Rajpoot
2020	J	`jnl`	Self-Path: Self-supervision for Classification of Pathology Images with Limited Annotations. CoRR Navid Alemi Koohbanani, Balagopal Unnikrishnan, Syed Ali Khurram, Pavitra Krishnaswamy, Nasir M. Rajpoot
2020	—	`—`	Working with scarce annotations in computational pathology. Navid Alemi Koohbanani
2019	—	`conf`	CGC-Net: Cell Graph Convolutional Network for Grading of Colorectal Cancer Histology Images. ICCV Workshops Yanning Zhou, Simon Graham, Navid Alemi Koohbanani, Muhammad Shaban, Pheng-Ann Heng, Nasir M. Rajpoot
2019	J	`jnl`	CGC-Net: Cell Graph Convolutional Network for Grading of Colorectal Cancer Histology Images. CoRR Yanning Zhou, Simon Graham, Navid Alemi Koohbanani, Muhammad Shaban, Pheng-Ann Heng, Nasir M. Rajpoot
2019	J	`jnl`	NuClick: From Clicks in the Nuclei to Nuclear Boundaries. CoRR Mostafa Jahanifar, Navid Alemi Koohbanani, Nasir M. Rajpoot
2019	—	`conf`	Nuclear Instance Segmentation Using a Proposal-Free Spatially Aware Deep Learning Framework. MICCAI (1) Navid Alemi Koohbanani, Mostafa Jahanifar, Ali Gooya, Nasir M. Rajpoot
2019	—	`conf`	PanNuke: An Open Pan-Cancer Histology Dataset for Nuclei Instance Segmentation and Classification. ECDP Jevgenij Gamper, Navid Alemi Koohbanani, Ksenija Benet, Ali Khuram, Nasir M. Rajpoot
2018	—	`conf`	Context-Aware Learning Using Transferable Features for Classification of Breast Cancer Histology Images. ICIAR Ruqayya Awan, Navid Alemi Koohbanani, Muhammad Shaban, Anna Lisowska, Nasir M. Rajpoot
2018	J	`jnl`	Context-Aware Learning using Transferable Features for Classification of Breast Cancer Histology Images. CoRR Ruqayya Awan, Navid Alemi Koohbanani, Muhammad Shaban, Anna Lisowska, Nasir M. Rajpoot
2018	J	`jnl`	Leveraging Transfer Learning for Segmenting Lesions and their Attributes in Dermoscopy Images. CoRR Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajeddin, Ali Gooya, Nasir M. Rajpoot
2018	J	`jnl`	Methods for Segmentation and Classification of Digital Microscopy Tissue Images. CoRR Quoc Dang Vu, Simon Graham, Minh Nguyen Nhat To, Muhammad Shaban, Talha Qaiser, Navid Alemi Koohbanani, Syed Ali Khurram, Tahsin M. Kurç, Keyvan Farahani, Tianhao Zhao, Rajarsi R. Gupta, Jin Tae Kwak, Nasir M. Rajpoot, Joel H. Saltz
2018	—	`conf`	Nuclei Detection Using Mixture Density Networks. MLMI@MICCAI Navid Alemi Koohbanani, Mostafa Jahanifar, Ali Gooya, Nasir M. Rajpoot
2018	J	`jnl`	Nuclei Detection Using Mixture Density Networks. CoRR Navid Alemi Koohbanani, Mostafa Jahanifar, Ali Gooya, Nasir M. Rajpoot
2018	—	`conf`	Significance of Hyperparameter Optimization for Metastasis Detection in Breast Histology Images. COMPAY/OMIA@MICCAI Navid Alemi Koohbanani, Talha Qaiser, Muhammad Shaban, Jevgenij Gamper, Nasir M. Rajpoot