Nathaniel Wesley Filardo

25 papers A* 5B 2C 3Misc 1Journal 9Unranked 5
YearRankTypeTitle / Venue / Authors
2025 B conf
CPP
Vadim Zaliva, Kayvan Memarian, Brian Campbell, Ricardo Almeida, Nathaniel Wesley Filardo, Ian Stark, Peter Sewell
2025 A* conf
SOSP
Saar Amar, Tony Chen, David Chisnall, Nathaniel Wesley Filardo, Ben Laurie, Hugo Lefeuvre, Kunyan Liu, Simon W. Moore, Robert Norton-Wright, Margo I. Seltzer, Yucong Tao, Robert N. M. Watson, Hongyan Xia
2025 J jnl
Commun. ACM
Robert N. M. Watson, John Baldwin, David Chisnall, Tony Chen, Jessica Clarke, Brooks Davis, Nathaniel Wesley Filardo, Brett F. Gutstein, Graeme Jenkinson, Ben Laurie, Alfredo Mazzinghi, Simon W. Moore, Peter G. Neumann, Hamed Okhravi, Alex Richardson, Alex Rebert, Peter Sewell, Laurence Tratt, Murali Vijayaraghavan, Hugo Vincent, Konrad Witaszczyk
2024 C conf
ISMM
Nathaniel Wesley Filardo, Matthew J. Parkinson
2024 J jnl
IEEE Secur. Priv.
Robert N. M. Watson, David Chisnall, Jessica Clarke, Brooks Davis, Nathaniel Wesley Filardo, Ben Laurie, Simon W. Moore, Peter G. Neumann, Alexander Richardson, Peter Sewell, Konrad Witaszczyk, Jonathan Woodruff
2024 conf
ASPLOS (2)
Nathaniel Wesley Filardo, Brett F. Gutstein, Jonathan Woodruff, Jessica Clarke, Peter Rugg, Brooks Davis, Mark Johnston, Robert M. Norton, David Chisnall, Simon W. Moore, Peter G. Neumann, Robert N. M. Watson
2024 J jnl
Proc. ACM Program. Lang.
Zachary Palmer, Nathaniel Wesley Filardo, Ke Wu
2023 C conf
ICCD
Franz A. Fuchs, Jonathan Woodruff, Peter Rugg, Marno van der Maas, Alexandre Joannou, Alexander Richardson, Jessica Clarke, Nathaniel Wesley Filardo, Brooks Davis, John Baldwin, Peter G. Neumann, Simon W. Moore, Robert N. M. Watson
2023 A* conf
MICRO
Saar Amar, David Chisnall, Tony Chen, Nathaniel Wesley Filardo, Ben Laurie, Kunyan Liu, Robert M. Norton, Simon W. Moore, Yucong Tao, Robert N. M. Watson, Hongyan Xia
2020 A* conf
SP
Nathaniel Wesley Filardo, Brett F. Gutstein, Jonathan Woodruff, Sam Ainsworth, Lucian Paul-Trifu, Brooks Davis, Hongyan Xia, Edward Tomasz Napierala, Alexander Richardson, John Baldwin, David Chisnall, Jessica Clarke, Khilan Gudka, Alexandre Joannou, A. Theodore Markettos, Alfredo Mazzinghi, Robert M. Norton, Michael Roe, Peter Sewell, Stacey D. Son, Timothy M. Jones, Simon W. Moore, Peter G. Neumann, Robert N. M. Watson
2019 J jnl
IEEE Trans. Computers
Jonathan Woodruff, Alexandre Joannou, Hongyan Xia, Anthony C. J. Fox, Robert M. Norton, David Chisnall, Brooks Davis, Khilan Gudka, Nathaniel Wesley Filardo, A. Theodore Markettos, Michael Roe, Peter G. Neumann, Robert N. M. Watson, Simon W. Moore
2019 A* conf
MICRO
Hongyan Xia, Jonathan Woodruff, Sam Ainsworth, Nathaniel Wesley Filardo, Michael Roe, Alexander Richardson, Peter Rugg, Peter G. Neumann, Simon W. Moore, Robert N. M. Watson, Timothy M. Jones
2019 A* conf
ASPLOS
Brooks Davis, Robert N. M. Watson, Alexander Richardson, Peter G. Neumann, Simon W. Moore, John Baldwin, David Chisnall, Jessica Clarke, Nathaniel Wesley Filardo, Khilan Gudka, Alexandre Joannou, Ben Laurie, A. Theodore Markettos, J. Edward Maste, Alfredo Mazzinghi, Edward Tomasz Napierala, Robert M. Norton, Michael Roe, Peter Sewell, Stacey D. Son, Jonathan Woodruff
2017 conf
MAPL@PLDI
Tim Vieira, Matthew Francis-Landau, Nathaniel Wesley Filardo, Farzad Khorasani, Jason Eisner
2016 conf
IEEE Symposium on Security and Privacy Workshops
Nathaniel Wesley Filardo
2015 J jnl
CoRR
Kathryn Baker, Michael Bloodgood, Bonnie J. Dorr, Chris Callison-Burch, Nathaniel Wesley Filardo, Christine D. Piatko, Lori S. Levin, Scott Miller
2014 J jnl
CoRR
Kathrin Baker, Michael Bloodgood, Bonnie J. Dorr, Nathaniel Wesley Filardo, Lori S. Levin, Christine D. Piatko
2014 J jnl
CoRR
Kathrin Baker, Michael Bloodgood, Chris Callison-Burch, Bonnie J. Dorr, Nathaniel Wesley Filardo, Lori S. Levin, Scott Miller, Christine D. Piatko
2012 conf
ICLP (Technical Communications)
Nathaniel Wesley Filardo, Jason Eisner
2012 C conf
ISPEC
Nathaniel Wesley Filardo, Giuseppe Ateniese
2012 J jnl
Comput. Linguistics
Kathrin Baker, Michael Bloodgood, Bonnie J. Dorr, Chris Callison-Burch, Nathaniel Wesley Filardo, Christine D. Piatko, Lori S. Levin, Scott Miller
2011 J jnl
IACR Cryptol. ePrint Arch.
Nathaniel Wesley Filardo, Giuseppe Ateniese
2010 B conf
LREC
Kathrin Baker, Michael Bloodgood, Bonnie J. Dorr, Nathaniel Wesley Filardo, Lori S. Levin, Christine D. Piatko
2010 conf
Datalog
Jason Eisner, Nathaniel Wesley Filardo
2010 Misc conf
AMTA
Kathryn Baker, Michael Bloodgood, Chris Callison-Burch, Bonnie J. Dorr, Nathaniel Wesley Filardo, Lori S. Levin, Scott Miller, Christine D. Piatko
Docker-README.md
← Index Docker-README.md markdown
# REDB Docker Setup

This document describes the Docker containerization for the REDB malware analysis framework.

## Overview

REDB has been containerized as a single unified image that supports both feature extraction and decompilation analysis. The container is stateless, processes files from S3 or local mounts, and exports results to ClickHouse database or via API callbacks.

## Architecture

- **Single Unified Container**: One image handles both feature extraction and decompilation
- **Runtime Tool Installation**: Tools (CAPA, DIE, Binary Ninja) installed at runtime from host snapshots
- **Stateless Processing**: No persistent storage required between runs
- **Multiple Invocation Modes**: Supports `--nomad-job`, `--s3`, `--s3-solo`, and `--path` modes
- **External Dependencies**: Connects to external ClickHouse and S3 services

## Files Structure

```
├── Dockerfile                 # Single unified container definition
├── docker-build.sh            # Build script with Docker Desktop bug workaround
├── docker-push.sh             # Push script to registry
├── test-docker.sh             # Container testing script
├── test-nomad.sh              # Nomad job mode testing
├── .dockerignore              # Build context exclusions
└── scripts/
    └── setup-and-run.sh       # Runtime tool setup entrypoint
```

## Tool Installation Strategy

The container uses a **runtime installation** approach:

1. **Base Image**: Contains Python dependencies and REDB code
2. **Runtime Setup**: `scripts/setup-and-run.sh` configures tools at container start
3. **Host Snapshots**: Binary Ninja installed from `/opt/binaryninja` if available
4. **System Tools**: CAPA and DIE expected at `/usr/bin/capa` and `/usr/bin/nfdc`

## Build and Run

### 1. Build Container

```bash
# Build unified image
./docker-build.sh

# Manual build
docker build --platform linux/amd64 -f Dockerfile -t redb:latest .
```

### 2. Run Modes

#### Nomad Job Mode (Primary)
```bash
# Feature extraction
docker run --rm \
  -e JOB_ID="analysis_001" \
  -e S3_KEY="samples/malware.exe" \
  -e S3_BUCKET="malware-bucket" \
  -e WORKER_TYPE="feature_extraction" \
  -e CALLBACK_URL="https://api.example.com/callbacks" \
  -e ANALYSIS_MODULES="BasicPropertiesExtractor,PEFeaturesExtractor" \
  -e CLICKHOUSE_HOST="clickhouse.example.com" \
  -e S3_ENDPOINT="s3.example.com" \
  -e S3_ACCESS_KEY="your-key" \
  -e S3_SECRET_KEY="your-secret" \
  redb:latest python3 start.py --nomad-job

# Decompilation (same container, different flags)
docker run --rm \
  -e JOB_ID="analysis_002" \
  -e S3_KEY="samples/malware.exe" \
  -e S3_BUCKET="malware-bucket" \
  -e WORKER_TYPE="decompilation" \
  -e CALLBACK_URL="https://api.example.com/callbacks" \
  -e ANALYSIS_MODULES="all" \
  -v /opt/binaryninja:/opt/binaryninja:ro \
  redb:latest python3 start.py --nomad-job --decompile
```

#### S3 Solo Mode
```bash
# Process single sample by S3 key (standard sharded path)
docker run --rm \
  -e S3_BUCKET="samples-bucket" \
  -e CLICKHOUSE_HOST="clickhouse.example.com" \
  -e S3_ENDPOINT="s3.example.com" \
  -e INDEX_PREFIX="redb" \
  -e REPO="test-analysis" \
  redb:latest python3 start.py --s3-solo "09/f7/09f7d02a3c2382199458c98a62b045145ee54ab6aba86166aecf3d10c3c1444c.zip"

# Process private sample (with prepath)
docker run --rm \
  -e S3_BUCKET="samples-bucket" \
  -e CLICKHOUSE_HOST="clickhouse.example.com" \
  -e S3_ENDPOINT="s3.example.com" \
  -e INDEX_PREFIX="redb" \
  -e REPO="test-analysis" \
  redb:latest python3 start.py --s3-solo "private/ab/cd/abcd1234567890abcdef1234567890abcdef1234567890abcdef123456.zip"
```

#### Local Files Mode
```bash
# Mount local samples
docker run --rm \
  -v /path/to/samples:/samples:ro \
  -v ./logs:/app/logs \
  -e CLICKHOUSE_HOST="clickhouse.example.com" \
  redb:latest python3 start.py --path /samples --repo local_test --index_prefix redb
```

## Environment Variables

### Required for Nomad Job Mode
- `JOB_ID` - Unique job identifier
- `S3_KEY` - S3 object key for sample
- `S3_BUCKET` - S3 bucket name
- `WORKER_TYPE` - "feature_extraction" or "decompilation"
- `CALLBACK_URL` - API endpoint for results
- `ANALYSIS_MODULES` - Comma-separated extractor list or "all"

### Database Configuration
- `CLICKHOUSE_HOST` - ClickHouse server hostname
- `CLICKHOUSE_PORT` - Port (default: 8123)
- `CLICKHOUSE_USER` - Database user (default: default)
- `CLICKHOUSE_PASSWORD` - Database password
- `CLICKHOUSE_DATABASE` - Database name (default: default)

### S3 Configuration
- `S3_ENDPOINT` - S3 endpoint URL
- `S3_ACCESS_KEY` - S3 access key
- `S3_SECRET_KEY` - S3 secret key
- `S3_SECURE` - "true" or "false" for HTTPS

### Processing Configuration
- `INDEX_PREFIX` - Database table prefix (default: redb)
- `REPO` - Repository identifier for this analysis batch
- `BATCH_SIZE` - Processing batch size (default: 10)
- `REDB_TIMEOUT` - Analysis timeout in seconds (default: 300)

### Tool Timeouts
- `CAPA_TIMEOUT` - CAPA analysis timeout (default: 300)
- `DIE_TIMEOUT` - DIE analysis timeout (default: 180)
- `BINJA_TIMEOUT` - Binary Ninja timeout (default: 1200)
- `DECOMPILE_EXTRACTOR_TIMEOUT` - Decompilation timeout (default: 2580)

## Binary Ninja Setup

For decompilation capabilities, mount Binary Ninja from host:

```bash
# Mount Binary Ninja installation
-v /opt/binaryninja:/opt/binaryninja:ro

# Mount license file
-v /path/to/license.dat:/home/analyzer/.binaryninja/license.dat:ro
```

The container will automatically detect and configure Binary Ninja at runtime.

## Registry Deployment

### Push to Registry
```bash
# Tag and push
./docker-push.sh

# Or manually
docker tag redb:latest your-registry/redb:latest
docker push your-registry/redb:latest
```

### Pull and Run
```bash
docker pull your-registry/redb:latest
docker run your-registry/redb:latest python3 start.py --nomad-job
```

## Testing

### Container Functionality Test
```bash
# Test with S3 key (standard sharded path)
./test-docker.sh "09/f7/09f7d02a3c2382199458c98a62b045145ee54ab6aba86166aecf3d10c3c1444c.zip"

# Test with private sample S3 key
./test-docker.sh "private/ab/cd/abcd1234567890abcdef1234567890abcdef1234567890abcdef123456.zip"
```

### Nomad Job Architecture Test
```bash
# Test Nomad job mode
./test-nomad.sh
```

## Development

### Interactive Container
```bash
# Debug container interactively
docker run -it --entrypoint /bin/bash redb:latest

# Check tool availability
docker run --rm redb:latest which python3
docker run --rm redb:latest ls -la /usr/bin/capa
```

### Build Troubleshooting

The build script includes workarounds for Docker Desktop bugs:

```bash
# If build hangs at "exporting to image", press Ctrl+C
# The image will still be created and tagged automatically
./docker-build.sh
```

### Container Logs
```bash
# View logs from mounted directory
docker run -v ./logs:/app/logs redb:latest python3 start.py --path /samples
tail -f logs/*.txt
```

## Production Notes

### Resource Requirements
- **Memory**: 2-4GB recommended (8GB for decompilation)
- **CPU**: 2+ cores recommended
- **Disk**: Minimal (stateless container)
- **Network**: Access to ClickHouse and S3 services

### Security
- Container runs as non-root user `analyzer` (UID 1000)
- Sample files should be mounted read-only
- No persistent state between container runs
- Isolated processing environment for malware analysis

### Deployment Architecture

This container is designed for:
- **Nomad job dispatch**: Single-use containers processing one sample each
- **Kubernetes jobs**: Batch processing with external orchestration
- **CI/CD pipelines**: Automated analysis in build systems
- **Development**: Local testing and debugging

The unified container approach means the same image handles both feature extraction and decompilation - the difference is only in the command-line flags used when starting the container.