Nathan T. Weeks

17 papers C 2Journal 9Unranked 6
YearRankTypeTitle / Venue / Authors
2024 J jnl
Pandagma: a tool for identifying pan-gene sets and gene families at desired evolutionary depths and accommodating whole-genome duplications.
Bioinform.
Steven B. Cannon, Hyunoh Lee, Nathan T. Weeks, Joel Berendzen
2021 J jnl
A new decade and new data at SoyBase, the USDA-ARS soybean genetics and genomics database.
Nucleic Acids Res.
Anne V. Brown, Shawn I. Conners, Wei Huang, Andrew P. Wilkey, David M. Grant, Nathan T. Weeks, Steven B. Cannon, Michelle A. Graham, Rex T. Nelson
2020 — conf
Refining Fortran Failed Images.
ESPM2@SC
Nathan T. Weeks, Glenn R. Luecke, Gurpur M. Prabhu
2020 J jnl
Visual Companion for Booklovers.
CoRR
Zona Kostic, Jared Jessup, Jeffrey Baglioni, Nathan T. Weeks, Johann Philipp Dreessen, Ning Chen, Tianyu Liu
2019 — conf
BookVIS: Enhancing Browsing Experiences in Bookstores and Libraries.
SIGGRAPH Asia Posters
Zona Kostic, Nathan T. Weeks, Johann Philipp Dreessen, Jelena Dowey, Jeff Baglioni
2018 C conf
Challenges in Developing MPI Fault-Tolerant Fortran Applications.
CLUSTER
Nathan T. Weeks, Glenn R. Luecke, Pieter Maris, James P. Vary
2018 J jnl
High-performance epistasis detection in quantitative trait GWAS.
Int. J. High Perform. Comput. Appl.
Nathan T. Weeks, Glenn R. Luecke, Brandon M. Groth, Marina Kraeva, Li Ma, Luke M. Kramer, James E. Koltes, James M. Reecy
2018 J jnl
Ten quick tips for sharing open genomic data.
PLoS Comput. Biol.
Anne V. Brown, Jacqueline D. Campbell, Teshale Assefa, David M. Grant, Rex T. Nelson, Nathan T. Weeks, Steven B. Cannon
2017 — conf
Comparing Allinea's and Intel's performance tools for HPC.
SpringSim (HPC)
Glenn R. Luecke, Brandon M. Groth, Nathan T. Weeks, Marina Kraeva
2017 J jnl
Optimization of SAMtools sorting using OpenMP tasks.
Clust. Comput.
Nathan T. Weeks, Glenn R. Luecke
2016 J jnl
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family.
Nucleic Acids Res.
Sudhansu Dash, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Alan M. Cleary, Wei Huang, Scott R. Kalberer, Vijay Karingula, Alex G. Rice, Jugpreet Singh, Pooja E. Umale, Nathan T. Weeks, Andrew P. Wilkey, Andrew D. Farmer, Steven B. Cannon
2016 — conf
Performance Analysis and Optimization of SAMtools Sorting.
Euro-Par Workshops
Nathan T. Weeks, Glenn R. Luecke
2015 — conf
Fast Epistasis Detection in Large-Scale GWAS for Intel Xeon Phi Clusters.
TrustCom/BigDataSE/ISPA (3)
Glenn R. Luecke, Nathan T. Weeks, Brandon M. Groth, Marina Kraeva, Li Ma, Luke M. Kramer, James E. Koltes, James M. Reecy
2014 J jnl
Discovery of biological networks using an optimized partial correlation coefficient with information theory algorithm on Stampede's Xeon and Xeon Phi processors.
Concurr. Comput. Pract. Exp.
Lars Koesterke, James E. Koltes, Nathan T. Weeks, Kent F. Milfeld, Matthew W. Vaughn, James M. Reecy, Daniel Stanzione
2014 J jnl
ipcmd: a command-line interface to System V semaphores and message queues.
Concurr. Comput. Pract. Exp.
Nathan T. Weeks, Marina Kraeva, Glenn R. Luecke
2013 — conf
Optimizing the PCIT algorithm on stampede's Xeon and Xeon Phi processors for faster discovery of biological networks.
XSEDE
Lars Koesterke, Kent F. Milfeld, Matthew W. Vaughn, Daniel Stanzione, James E. Koltes, Nathan T. Weeks, James M. Reecy
2013 C conf
Parallelization of software pipelines using the mpififo Tool.
CLUSTER
Nathan T. Weeks, Marina Kraeva, Glenn R. Luecke