Nathan Salomonis

18 papers Journal 14Unranked 4
YearRankTypeTitle / Venue / Authors
2023 J jnl
pyInfinityFlow: optimized imputation and analysis of high-dimensional flow cytometry data for millions of cells.
Bioinform.
Kyle Ferchen, Nathan Salomonis, H. Leighton Grimes
2022 J jnl
CellDrift: inferring perturbation responses in temporally sampled single-cell data.
Briefings Bioinform.
Kang Jin, Daniel J. Schnell, Guangyuan Li, Nathan Salomonis, V. B. Surya Prasath, Rhonda Szczesniak, Bruce J. Aronow
2021 J jnl
DeepImmuno: deep learning-empowered prediction and generation of immunogenic peptides for T-cell immunity.
Briefings Bioinform.
Guangyuan Li, Balaji Iyer, V. B. Surya Prasath, Yizhao Ni, Nathan Salomonis
2021 J jnl
Pseudocell Tracer - A method for inferring dynamic trajectories using scRNAseq and its application to B cells undergoing immunoglobulin class switch recombination.
PLoS Comput. Biol.
Derek Reiman, Godhev Kumar Manakkat Vijay, Heping Xu, Andrew Sonin, Dianyu Chen, Nathan Salomonis, Harinder Singh, Aly A. Khan
2020 J jnl
Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF.
Bioinform.
Meenakshi Venkatasubramanian, Kashish Chetal, Daniel J. Schnell, Gowtham Atluri, Nathan Salomonis
2016 J jnl
Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.
Nat.
Andre Olsson, Meenakshi Venkatasubramanian, Viren K. Chaudhri, Bruce J. Aronow, Nathan Salomonis, Harinder Singh, H. Leighton Grimes
2014 J jnl
Long Non-Coding RNA and Alternative Splicing Modulations in Parkinson's Leukocytes Identified by RNA Sequencing.
PLoS Comput. Biol.
Lilach Soreq, Alessandro Guffanti, Nathan Salomonis, Alon Simchovitz, Zvi Israel, Hagai Bergman, Hermona Soreq
2014 J jnl
MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data.
BMC Bioinform.
Zhuohui Gan, Jianwu Wang, Nathan Salomonis, Jennifer C. Stowe, Gabriel G. Haddad, Andrew D. McCulloch, Ilkay Altintas, Alexander C. Zambon
2013 J jnl
Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.
Bioinform.
Inna Dubchak, Matthew Munoz, Alexander Poliakov, Nathan Salomonis, Simon Minovitsky, Rolf Bodmer, Alexander C. Zambon
2012 — conf
AltAnalyze - An Optimized Platform for RNA-Seq Splicing and Domain-Level Analyses.
HISB
Nathan Salomonis
2012 J jnl
GO-Elite: a flexible solution for pathway and ontology over-representation.
Bioinform.
Alexander C. Zambon, Stan Gaj, Isaac Ho, Kristina Hanspers, Karen Vranizan, Chris T. A. Evelo, Bruce R. Conklin, Alexander R. Pico, Nathan Salomonis
2012 — conf
LineageProfiler: Automated Classification and Visualization of Cell Type Identity for Mammalian Transcriptomes.
HISB
Nathan Salomonis
2012 — conf
MAAMD: A Workflow to Standardize Meta-Analyses of Affymetrix Microarray Data.
HISB
Zhuohui Gan, Jianwu Wang, Nathan Salomonis, Ilkay Altintas, Andrew D. McCulloch, Alexander C. Zambon
2012 J jnl
Mosaic: making biological sense of complex networks.
Bioinform.
Chao Zhang, Kristina Hanspers, Allan Kuchinsky, Nathan Salomonis, Dong Xu, Alexander R. Pico
2010 J jnl
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data.
Nucleic Acids Res.
Dorothea Emig, Nathan Salomonis, Jan Baumbach, Thomas Lengauer, Bruce R. Conklin, Mario Albrecht
2009 J jnl
Alternative Splicing in the Differentiation of Human Embryonic Stem Cells into Cardiac Precursors.
PLoS Comput. Biol.
Nathan Salomonis, Brandon Nelson, Karen Vranizan, Alexander R. Pico, Kristina Hanspers, Allan Kuchinsky, Linda Ta, Mark Mercola, Bruce R. Conklin
2007 J jnl
GenMAPP 2: new features and resources for pathway analysis.
BMC Bioinform.
Nathan Salomonis, Kristina Hanspers, Alexander C. Zambon, Karen Vranizan, Steven C. Lawlor, Kam D. Dahlquist, Scott Doniger, Joshua M. Stuart, Bruce R. Conklin, Alexander R. Pico
2005 — conf
ANOSVA: a statistical method for detecting splice variation from expression data.
ISMB (Supplement of Bioinformatics)
Melissa S. Cline, John Blume, Simon Cawley, Tyson Clark, Jing-Shan Hu, Gang Lu, Nathan Salomonis, Hui Wang, Alan Williams