Nathalie Théret

17 papers Journal 12Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
FUSE-PhyloTree: linking functions and sequence conservation modules of a protein family through phylogenomic analysis.
Bioinform.
Olivier Dennler, Elisa Chenel, François Coste, Samuel Blanquart, Catherine Belleannée, Nathalie Théret
2024 J jnl
A rule-based multiscale model of hepatic stellate cell plasticity: Critical role of the inactivation loop in fibrosis progression.
PLoS Comput. Biol.
Matthieu Bouguéon, Vincent Legagneux, Octave Hazard, Jérémy Bomo, Anne Siegel, Jérôme Feret, Nathalie Théret
2023 J jnl
Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the ADAMTS-TSL family.
PLoS Comput. Biol.
Olivier Dennler, François Coste, Samuel Blanquart, Catherine Belleannée, Nathalie Théret
2022 J jnl
Discrete modeling for integration and analysis of large-scale signaling networks.
PLoS Comput. Biol.
Pierre Vignet, Jean Coquet, Sébastien Auber, Matéo Boudet, Anne Siegel, Nathalie Théret
2021 J jnl
Constructing xenobiotic maps of metabolism to predict enzymes catalyzing metabolites capable of binding to DNA.
BMC Bioinform.
Maël Conan, Nathalie Théret, Sophie Langouet, Anne Siegel
2020 J jnl
A pipeline to create predictive functional networks: application to the tumor progression of hepatocellular carcinoma.
BMC Bioinform.
Maxime Folschette, Vincent Legagneux, Arnaud Poret, Lokmane Chebouba, Carito Guziolowski, Nathalie Théret
2018 — conf
KaSa: A Static Analyzer for Kappa.
CMSB
Pierre Boutillier, Ferdinanda Camporesi, Jean Coquet, Jérôme Feret, Kim Quyên Lý, Nathalie Théret, Pierre Vignet
2017 — conf
Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF-β Signaling.
CMSB
Jean Coquet, Nathalie Théret, Vincent Legagneux, Olivier Dameron
2016 — ed.
6th International Workshop on Static Analysis and Systems Biology, SASB 2015, Saint-Malo, France, September 8, 2015
SASB
Loïc Paulevé, Nathalie Théret
2016 J jnl
Geometric analysis of pathways dynamics: Application to versatility of TGF-β receptors.
Biosyst.
Satya Swarup Samal, Aurélien Naldi, Dima Grigoriev, Andreas Weber, Nathalie Théret, Ovidiu Radulescu
2016 J jnl
In silico characterization of the interaction between LSKL peptide, a LAP-TGF-beta derived peptide, and ADAMTS1.
Comput. Biol. Chem.
Marie-Amandine Laurent, Dominique Bonnier, Nathalie Théret, Pierre Tufféry, Gautier Moroy
2015 — conf
Preface.
SASB
Loïc Paulevé, Nathalie Théret
2014 J jnl
An integrative modeling framework reveals plasticity of TGF-β signaling.
BMC Syst. Biol.
Geoffroy Andrieux, Michel Le Borgne, Nathalie Théret
2011 J jnl
Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns.
BMC Bioinform.
Jeremy Gruel, Michel Le Borgne, Nolwenn LeMeur, Nathalie Théret
2008 J jnl
M@IA: A Modular Open-Source Application for Microarray Workflow and Integrative Datamining.
Silico Biol.
Antony Le Béchec, Pierre-Joachim Zindy, Thomas Sierocinski, Dimitri Petritis, Audrey Bihouée, Nolwenn LeMeur, Jean Léger, Nathalie Théret
2007 — ch.
Semantic Distillation: A Method for Clustering Objects by their Contextual Specificity.
NICSO
Thomas Sierocinski, Antony Le Béchec, Nathalie Théret, Dimitri Petritis
2007 J jnl
Semantic distillation: a method for clustering objects by their contextual specificity
CoRR
Thomas Sierocinski, Antony Le Béchec, Nathalie Théret, Dimitri Petritis