Natasja M. S. de Groot

25 papers Misc 1Journal 13Unranked 11
YearRankTypeTitle / Venue / Authors
2024 J jnl
IEEE Trans. Biomed. Eng.
Hanie Moghaddasi, Richard C. Hendriks, Borbála Hunyadi, Paul Knops, Mathijs S. van Schie, Natasja M. S. de Groot, Alle-Jan van der Veen
2024 conf
BioCAS
Rui Guan, Tao Shen, Paul Knops, Yannick J. H. J. Taverne, Zhenyu Gao, Sijun Du, Robert van Veldhoven, Natasja M. S. de Groot, Frans Widdershoven
2023 J jnl
Medical Biol. Eng. Comput.
Annejet Heida, Willemijn F. B. van der Does, Mathijs S. van Schie, Lianne N. van Staveren, Yannick J. H. J. Taverne, Ad J. J. C. Bogers, Natasja M. S. de Groot
2023 Misc conf
ICASSP
Johannes W. de Vries, Miao Sun, Natasja M. S. de Groot, Richard C. Hendriks
2022 J jnl
Comput. Biol. Medicine
Fons J. Wesselius, Mathijs S. van Schie, Natasja M. S. de Groot, Richard C. Hendriks
2022 J jnl
Comput. Biol. Medicine
Hanie Moghaddasi, Richard C. Hendriks, Alle-Jan van der Veen, Natasja M. S. de Groot, Borbála Hunyadi
2022 conf
CinC
Tijs Moree, Mathijs S. van Schie, Natasja M. S. de Groot, Richard C. Hendriks
2022 J jnl
Comput. Biol. Medicine
Miao Sun, Natasja M. S. de Groot, Richard C. Hendriks
2022 conf
CinC
Hanie Moghaddasi, Richard C. Hendriks, Alle-Jan van der Veen, Natasja M. S. de Groot, Borbála Hunyadi
2021 J jnl
Comput. Biol. Medicine
Bahareh Abdi, Mathijs S. van Schie, Natasja M. S. de Groot, Richard C. Hendriks
2021 J jnl
Comput. Biol. Medicine
Miao Sun, Natasja M. S. de Groot, Richard C. Hendriks
2021 J jnl
Comput. Biol. Medicine
Fons J. Wesselius, Mathijs S. van Schie, Natasja M. S. de Groot, Richard C. Hendriks
2020 J jnl
Biomed. Signal Process. Control.
Miao Sun, Elvin Isufi, Natasja M. S. de Groot, Richard C. Hendriks
2020 J jnl
Comput. Biol. Medicine
Bahareh Abdi, Richard C. Hendriks, Alle-Jan van der Veen, Natasja M. S. de Groot
2020 conf
EUSIPCO
Bart Kölling, Bahareh Abdi, Natasja M. S. de Groot, Richard C. Hendriks
2020 conf
EUSIPCO
Hanie Moghaddasi, Alle-Jan van der Veen, Natasja M. S. de Groot, Borbála Hunyadi
2019 conf
EUSIPCO
Miao Sun, Elvin Isufi, Natasja M. S. de Groot, Richard C. Hendriks
2019 J jnl
Comput. Biol. Medicine
Bahareh Abdi, Richard C. Hendriks, Alle-Jan van der Veen, Natasja M. S. de Groot
2019 conf
CinC
Jennifer Riccio, Alejandro Alcaine, Natasja M. S. de Groot, Richard P. M. Houben, Pablo Laguna, Juan Pablo Martínez
2019 conf
CinC
Bahareh Abdi, Richard C. Hendriks, Alle-Jan van der Veen, Natasja M. S. de Groot
2019 conf
EMBC
Bahareh Abdi, Alle-Jan van der Veen, Natasja M. S. de Groot, Richard C. Hendriks
2019 conf
BIOSIGNALS
Bahareh Abdi, Richard C. Hendriks, Alle-Jan van der Veen, Natasja M. S. de Groot
2016 J jnl
Digit. Signal Process.
Alejandro Alcaine, Natasja M. S. de Groot, Pablo Laguna, Juan Pablo Martínez, Richard P. M. Houben
2015 conf
CinC
Alejandro Alcaine, Natasja M. S. de Groot, Pablo Laguna, Juan Pablo Martínez, Richard P. M. Houben
2010 J jnl
IEEE Trans. Biomed. Eng.
Richard P. M. Houben, Natasja M. S. de Groot, Maurits A. Allessie
redb/utils/sort_files_by_type.py
← Index redb/utils/sort_files_by_type.py python
import os
import sys
from collections import defaultdict
import tempfile
from magika import Magika
import py7zr
import pyzipper
import shutil

"""
This script is used to sort files by their type. 
It reads all the files in the provided directory and splits them into different 
directories based on their type. Mainly, it classifies the files into the following types:
- PE Binaries
- Mach-O Binaries
- ELF Binaries
- APK 
- Other Files

It outputs the count of files for each file extension and file type.

Command line example:
nohup python3 sort_files_by_type.py /mnt/samples/consilience/malware/vx-bazaar-expanded/Bazaar.2020.12 \
    /mnt/samples/consilience/malware/_sorted_samples/vx-bazaar/2020/ > \
    /mnt/samples/consilience/malware/ops-logs/20241014-SORT_FILES-bazaar_2020.12.output.log 2>&1 &
"""


def process_zip_file(filepath):
    print(f"[INFO] - Processing zip file: {filepath}")
    with tempfile.TemporaryDirectory() as temp_dir:
        try:
            with pyzipper.AESZipFile(filepath) as zf:
                zf.pwd = b"infected"
                filename = zf.namelist()[0]
                zf.extractall(temp_dir)
                extracted_zip_path = os.path.join(temp_dir, filename)
                return process_binary_file(extracted_zip_path)
        except Exception as e:
            print(f"[ERR] - Error processing zip file {filepath}: {str(e)}")
            return None


def process_7z_file(filepath):
    print(f"[INFO] - Processing 7z file: {filepath}")
    with tempfile.TemporaryDirectory() as temp_dir:
        try:
            with py7zr.SevenZipFile(filepath, mode="r", password="infected") as z:
                z.extractall(path=temp_dir)
                for root, _, files in os.walk(temp_dir):
                    for file in files:
                        extracted_file_path = os.path.join(root, file)
                        return process_binary_file(extracted_file_path)
        except Exception as e:
            print(f"[ERR] - Error processing 7z file {filepath}: {str(e)}")
            return None


def process_binary_file(filepath):
    print(f"[INFO] - Processing binary file: {filepath}")
    try:
        with open(filepath, "rb") as f:
            data = f.read(512 * 1024)  # 512KB
        return Magika().identify_bytes(data).output.ct_label
    except Exception as e:
        print(f"[ERR] - Error processing binary file {filepath}: {str(e)}")
        return "ERROR"


def count_file_extensions(path, dest_dir):
    # A defaultdict to store file extension counts
    extension_count = defaultdict(int)
    filetype_count = defaultdict(int)
    tot_files = 0

    # Walk through the directory
    for root, dirs, files in os.walk(path):
        for file in files:
            if file.startswith("."):
                continue

            tot_files += 1
            # Split the file extension from the file name
            _, ext = os.path.splitext(file)
            ext = ext.lower()

            # Count the extensions
            extension_count[ext] += 1
            filepath = os.path.join(root, file)
            filetype = ""

            if ext == ".7z":
                filetype = process_7z_file(filepath)
            elif ext == ".zip":
                filetype = process_zip_file(filepath)
            else:
                filetype = process_binary_file(filepath)

            filetype_count[filetype] += 1

            if filetype == "pebin":
                dest = os.path.join(dest_dir, "pebin")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "macho":
                dest = os.path.join(dest_dir, "macho")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "elf":
                dest = os.path.join(dest_dir, "elf")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "apk":
                dest = os.path.join(dest_dir, "apk")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            else:
                dest = os.path.join(dest_dir, "other")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            print(f"[STATUS] - Progres: {tot_files}/{len(files)} files processed")

    # Print the results
    # print("- File Extension Statistics:")
    # for ext, count in extension_count.items():
    #     if ext:  # To exclude files with no extension
    #         print(f"\t{ext}: {count} files")

    # if "" in extension_count:
    #     print(f'\t{extension_count[""]} files with no extension')

    print(f"- Total Number of Files: {tot_files}")
    print("\n- File Type Statistics:")
    for filetype, count in sorted(filetype_count.items()):
        print(f"\t{filetype:<15}{count:>8}")


if __name__ == "__main__":
    # Check if the path was passed as a command-line argument
    if len(sys.argv) != 3:
        print("Usage: python3 script.py <input_path> <dest_dir>")
        sys.exit(1)

    # Get the path from the command-line arguments
    input_path = sys.argv[1]
    dest_dir = sys.argv[2]

    # Check if the provided path is valid
    if not os.path.isdir(input_path):
        print(f"The path '{input_path}' is not a valid directory.")
        sys.exit(1)

    # Call the function to count file extensions
    count_file_extensions(input_path, dest_dir)