Natasa Przulj - RankMe

56 papers Misc 3Journal 49Unranked 2

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Clustering individuals using INMTD: a novel versatile multi-view embedding framework integrating omics and imaging data. Bioinform. Zuqi Li, Sam F. L. Windels, Noël Malod-Dognin, Seth M. Weinberg, Mary L. Marazita, Susan Walsh, Mark D. Shriver, David W. Fardo, Peter Claes, Natasa Przulj, Kristel Van Steen
2024	J	`jnl`	Graphlet-based hyperbolic embeddings capture evolutionary dynamics in genetic networks. Bioinform. Sam F. L. Windels, Daniel Tello Velasco, Mikhail Rotkevich, Noël Malod-Dognin, Natasa Przulj
2024	J	`jnl`	Graphlets correct for the topological information missed by random walks. CoRR Sam F. L. Windels, Noël Malod-Dognin, Natasa Przulj
2024	J	`jnl`	Simplicity within biological complexity. CoRR Natasa Przulj, Noël Malod-Dognin
2024	J	`jnl`	Simplifying complex machine learning by linearly separable network embedding spaces. CoRR Alexandros Xenos, Noël Malod-Dognin, Natasa Przulj
2023	J	`jnl`	A functional analysis of omic network embedding spaces reveals key altered functions in cancer. Bioinform. Sergio Doria-Belenguer, Alexandros Xenos, Gaia Ceddia, Noël Malod-Dognin, Natasa Przulj
2022	J	`jnl`	Four algorithms to solve symmetric multi-type non-negative matrix tri-factorization problem. J. Glob. Optim. Rok Hribar, Timotej Hrga, Gregor Papa, Gasper Petelin, Janez Povh, Natasa Przulj, Vida Vukasinovic
2022	J	`jnl`	Identifying cellular cancer mechanisms through pathway-driven data integration. Bioinform. Sam F. L. Windels, Noël Malod-Dognin, Natasa Przulj
2021	J	`jnl`	Classification in biological networks with hypergraphlet kernels. Bioinform. Jose Lugo-Martinez, Daniel Zeiberg, Thomas Gaudelet, Noël Malod-Dognin, Natasa Przulj, Predrag Radivojac
2021	J	`jnl`	Linear functional organization of the omic embedding space. Bioinform. Alexandros Xenos, Noël Malod-Dognin, S. Milinkovic, Natasa Przulj
2021	J	`jnl`	Multi-project and Multi-profile joint Non-negative Matrix Factorization for cancer omic datasets. Bioinform. Diego Azael Salazar, Natasa Przulj, Carlos F. Valencia
2020	J	`jnl`	Chromatin network markers of leukemia. Bioinform. Noël Malod-Dognin, Vera Pancaldi, Alfonso Valencia, Natasa Przulj
2020	J	`jnl`	Four algorithms to solve symmetric multi-type non-negative matrix tri-factorization problem. CoRR Rok Hribar, Timotej Hrga, Gregor Papa, Gasper Petelin, Janez Povh, Natasa Przulj, Vida Vukasinovic
2020	J	`jnl`	Probabilistic graphlets capture biological function in probabilistic molecular networks. Bioinform. Sergio Doria-Belenguer, Markus K. Youssef, René Böttcher, Noël Malod-Dognin, Natasa Przulj
2019	J	`jnl`	Functional geometry of protein interactomes. Bioinform. Noël Malod-Dognin, Natasa Przulj
2019	J	`jnl`	Graphlet Laplacians for topology-function and topology-disease relationships. Bioinform. Sam F. L. Windels, Noël Malod-Dognin, Natasa Przulj
2018	J	`jnl`	Higher-order molecular organization as a source of biological function. Bioinform. Thomas Gaudelet, Noël Malod-Dognin, Natasa Przulj
2017	J	`jnl`	Omics Data Complementarity Underlines Functional Cross-Communication in Yeast. J. Integr. Bioinform. Noël Malod-Dognin, Natasa Przulj
2017	J	`jnl`	Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment-free network comparison methods. Bioinform. Ömer Nebil Yaveroglu, Noël Malod-Dognin, Tijana Milenkovic, Natasa Przulj
2016	J	`jnl`	Fuse: multiple network alignment via data fusion. Bioinform. Vladimir Gligorijevic, Noël Malod-Dognin, Natasa Przulj
2016	Misc	`conf`	Patient-Specific Data Fusion for Cancer Stratification and Personalised Treatment. PSB Vladimir Gligorijevic, Noël Malod-Dognin, Natasa Przulj
2016	J	`jnl`	Predictive Functional Connectivity of Real-World Systems. CoRR Anida Sarajlic, Noël Malod-Dognin, Ömer Nebil Yaveroglu, Natasa Przulj
2015	J	`jnl`	L-GRAAL: Lagrangian graphlet-based network aligner. Bioinform. Noël Malod-Dognin, Natasa Przulj
2015	J	`jnl`	Proper evaluation of alignment-free network comparison methods. Bioinform. Ömer Nebil Yaveroglu, Tijana Milenkovic, Natasa Przulj
2015	J	`jnl`	Topology-function conservation in protein-protein interaction networks. Bioinform. Darren Davis, Ömer Nebil Yaveroglu, Noël Malod-Dognin, Aleksandar Stojmirovic, Natasa Przulj
2014	J	`jnl`	GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity. Bioinform. Noël Malod-Dognin, Natasa Przulj
2014	J	`jnl`	Integration of molecular network data reconstructs Gene Ontology. Bioinform. Vladimir Gligorijevic, Vuk Janjic, Natasa Przulj
2014	J	`jnl`	Predicting disease associations via biological network analysis. BMC Bioinform. Kai Sun, Joana P. Gonçalves, Chris Larminie, Natasa Przulj
2014	J	`jnl`	The Topology of the Growing Human Interactome Data. J. Integr. Bioinform. Vuk Janjic, Natasa Przulj
2014	J	`jnl`	ergm.graphlets: A Package for ERG Modeling Based on Graphlet Statistics. CoRR Omer Nebil Yaveroglu, Sean M. Fitzhugh, Maciej Kurant, Athina Markopoulou, Carter T. Butts, Natasa Przulj
2013	J	`jnl`	Graphlet-based measures are suitable for biological network comparison. Bioinform. Wayne B. Hayes, Kai Sun, Natasa Przulj
2011	—	`conf`	A framework for FPGA acceleration of large graph problems: Graphlet counting case study. FPT Brahim Betkaoui, David B. Thomas, Wayne Luk, Natasa Przulj
2011	J	`jnl`	GraphCruch 2: Software tool for network modeling, alignment and clustering. BMC Bioinform. Oleksii Kuchaiev, Aleksandar Stevanovic, Wayne B. Hayes, Natasa Przulj
2011	J	`jnl`	Integrative network alignment reveals large regions of global network similarity in yeast and human. Bioinform. Oleksii Kuchaiev, Natasa Przulj
2011	J	`jnl`	Introduction to the Special Issue on Biological Networks. Internet Math. Natasa Przulj
2010	J	`jnl`	An integrative approach to modeling biological networks. J. Integr. Bioinform. Vesna Memisevic, Tijana Milenkovic, Natasa Przulj
2010	J	`jnl`	Biological network comparison using graphlet degree distribution. Bioinform. Natasa Przulj
2010	J	`jnl`	Complementarity of network and sequence information in homologous proteins. J. Integr. Bioinform. Vesna Memisevic, Tijana Milenkovic, Natasa Przulj
2010	—	`ch.`	From Topology to Phenotype in Protein-Protein Interaction Networks. Network Science Natasa Przulj
2010	Misc	`conf`	Geometric Evolutionary Dynamics of Protein Interaction Networks. Pacific Symposium on Biocomputing Natasa Przulj, Oleksii Kuchaiev, Aleksandar Stevanovic, Wayne B. Hayes
2010	J	`jnl`	Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets. BMC Syst. Biol. Hsiang Ho, Tijana Milenkovic, Vesna Memisevic, Jayavani Aruri, Natasa Przulj, Anand K. Ganesan
2009	J	`jnl`	Geometric De-noising of Protein-Protein Interaction Networks. PLoS Comput. Biol. Oleksii Kuchaiev, Marija Rasajski, Desmond J. Higham, Natasa Przulj
2009	Misc	`conf`	Learning the Structure of Protein-Protein Interaction Networks. Pacific Symposium on Biocomputing Oleksii Kuchaiev, Natasa Przulj
2008	J	`jnl`	Fitting a geometric graph to a protein-protein interaction network. Bioinform. Desmond J. Higham, Marija Rasajski, Natasa Przulj
2008	J	`jnl`	GraphCrunch: A tool for large network analyses. BMC Bioinform. Tijana Milenkovic, Jason Lai, Natasa Przulj
2007	J	`jnl`	Biological network comparison using graphlet degree distribution. Bioinform. Natasa Przulj
2007	J	`jnl`	Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution. PLoS Comput. Biol. Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp
2006	J	`jnl`	Efficient estimation of graphlet frequency distributions in protein-protein interaction networks. Bioinform. Natasa Przulj, Derek G. Corneil, Igor Jurisica
2006	—	`conf`	Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation. Systems Biology and Computational Proteomics Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp
2005	J	`jnl`	2-Tree probe interval graphs have a large obstruction set. Discret. Appl. Math. Natasa Przulj, Derek G. Corneil
2005	—	`—`	Analyzing large biological networks: protein-protein interactions example. Natasa Przulj
2004	J	`jnl`	Functional topology in a network of protein interactions. Bioinform. Natasa Przulj, Dennis A. Wigle, Igor Jurisica
2004	J	`jnl`	Hereditary dominating pair graphs. Discret. Appl. Math. Natasa Przulj, Derek G. Corneil, Ekkehard Köhler
2004	J	`jnl`	Modeling interactome: scale-free or geometric?. Bioinform. Natasa Przulj, Derek G. Corneil, Igor Jurisica
2004	J	`jnl`	Protein complex prediction via cost-based clustering. Bioinform. Andrew D. King, Natasa Przulj, Igor Jurisica
1998	J	`jnl`	Minimum Average Time Broadcast Graphs. Parallel Process. Lett. Arthur L. Liestman, Natasa Przulj