Natasa Przulj

56 papers Misc 3Journal 49Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Clustering individuals using INMTD: a novel versatile multi-view embedding framework integrating omics and imaging data.
Bioinform.
Zuqi Li, Sam F. L. Windels, Noël Malod-Dognin, Seth M. Weinberg, Mary L. Marazita, Susan Walsh, Mark D. Shriver, David W. Fardo, Peter Claes, Natasa Przulj, Kristel Van Steen
2024 J jnl
Graphlet-based hyperbolic embeddings capture evolutionary dynamics in genetic networks.
Bioinform.
Sam F. L. Windels, Daniel Tello Velasco, Mikhail Rotkevich, Noël Malod-Dognin, Natasa Przulj
2024 J jnl
Graphlets correct for the topological information missed by random walks.
CoRR
Sam F. L. Windels, Noël Malod-Dognin, Natasa Przulj
2024 J jnl
Simplicity within biological complexity.
CoRR
Natasa Przulj, Noël Malod-Dognin
2024 J jnl
Simplifying complex machine learning by linearly separable network embedding spaces.
CoRR
Alexandros Xenos, Noël Malod-Dognin, Natasa Przulj
2023 J jnl
A functional analysis of omic network embedding spaces reveals key altered functions in cancer.
Bioinform.
Sergio Doria-Belenguer, Alexandros Xenos, Gaia Ceddia, Noël Malod-Dognin, Natasa Przulj
2022 J jnl
Four algorithms to solve symmetric multi-type non-negative matrix tri-factorization problem.
J. Glob. Optim.
Rok Hribar, Timotej Hrga, Gregor Papa, Gasper Petelin, Janez Povh, Natasa Przulj, Vida Vukasinovic
2022 J jnl
Identifying cellular cancer mechanisms through pathway-driven data integration.
Bioinform.
Sam F. L. Windels, Noël Malod-Dognin, Natasa Przulj
2021 J jnl
Classification in biological networks with hypergraphlet kernels.
Bioinform.
Jose Lugo-Martinez, Daniel Zeiberg, Thomas Gaudelet, Noël Malod-Dognin, Natasa Przulj, Predrag Radivojac
2021 J jnl
Linear functional organization of the omic embedding space.
Bioinform.
Alexandros Xenos, Noël Malod-Dognin, S. Milinkovic, Natasa Przulj
2021 J jnl
Multi-project and Multi-profile joint Non-negative Matrix Factorization for cancer omic datasets.
Bioinform.
Diego Azael Salazar, Natasa Przulj, Carlos F. Valencia
2020 J jnl
Chromatin network markers of leukemia.
Bioinform.
Noël Malod-Dognin, Vera Pancaldi, Alfonso Valencia, Natasa Przulj
2020 J jnl
Four algorithms to solve symmetric multi-type non-negative matrix tri-factorization problem.
CoRR
Rok Hribar, Timotej Hrga, Gregor Papa, Gasper Petelin, Janez Povh, Natasa Przulj, Vida Vukasinovic
2020 J jnl
Probabilistic graphlets capture biological function in probabilistic molecular networks.
Bioinform.
Sergio Doria-Belenguer, Markus K. Youssef, René Böttcher, Noël Malod-Dognin, Natasa Przulj
2019 J jnl
Functional geometry of protein interactomes.
Bioinform.
Noël Malod-Dognin, Natasa Przulj
2019 J jnl
Graphlet Laplacians for topology-function and topology-disease relationships.
Bioinform.
Sam F. L. Windels, Noël Malod-Dognin, Natasa Przulj
2018 J jnl
Higher-order molecular organization as a source of biological function.
Bioinform.
Thomas Gaudelet, Noël Malod-Dognin, Natasa Przulj
2017 J jnl
Omics Data Complementarity Underlines Functional Cross-Communication in Yeast.
J. Integr. Bioinform.
Noël Malod-Dognin, Natasa Przulj
2017 J jnl
Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment-free network comparison methods.
Bioinform.
Ömer Nebil Yaveroglu, Noël Malod-Dognin, Tijana Milenkovic, Natasa Przulj
2016 J jnl
Fuse: multiple network alignment via data fusion.
Bioinform.
Vladimir Gligorijevic, Noël Malod-Dognin, Natasa Przulj
2016 Misc conf
Patient-Specific Data Fusion for Cancer Stratification and Personalised Treatment.
PSB
Vladimir Gligorijevic, Noël Malod-Dognin, Natasa Przulj
2016 J jnl
Predictive Functional Connectivity of Real-World Systems.
CoRR
Anida Sarajlic, Noël Malod-Dognin, Ömer Nebil Yaveroglu, Natasa Przulj
2015 J jnl
L-GRAAL: Lagrangian graphlet-based network aligner.
Bioinform.
Noël Malod-Dognin, Natasa Przulj
2015 J jnl
Proper evaluation of alignment-free network comparison methods.
Bioinform.
Ömer Nebil Yaveroglu, Tijana Milenkovic, Natasa Przulj
2015 J jnl
Topology-function conservation in protein-protein interaction networks.
Bioinform.
Darren Davis, Ömer Nebil Yaveroglu, Noël Malod-Dognin, Aleksandar Stojmirovic, Natasa Przulj
2014 J jnl
GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity.
Bioinform.
Noël Malod-Dognin, Natasa Przulj
2014 J jnl
Integration of molecular network data reconstructs Gene Ontology.
Bioinform.
Vladimir Gligorijevic, Vuk Janjic, Natasa Przulj
2014 J jnl
Predicting disease associations via biological network analysis.
BMC Bioinform.
Kai Sun, Joana P. Gonçalves, Chris Larminie, Natasa Przulj
2014 J jnl
The Topology of the Growing Human Interactome Data.
J. Integr. Bioinform.
Vuk Janjic, Natasa Przulj
2014 J jnl
ergm.graphlets: A Package for ERG Modeling Based on Graphlet Statistics.
CoRR
Omer Nebil Yaveroglu, Sean M. Fitzhugh, Maciej Kurant, Athina Markopoulou, Carter T. Butts, Natasa Przulj
2013 J jnl
Graphlet-based measures are suitable for biological network comparison.
Bioinform.
Wayne B. Hayes, Kai Sun, Natasa Przulj
2011 — conf
A framework for FPGA acceleration of large graph problems: Graphlet counting case study.
FPT
Brahim Betkaoui, David B. Thomas, Wayne Luk, Natasa Przulj
2011 J jnl
GraphCruch 2: Software tool for network modeling, alignment and clustering.
BMC Bioinform.
Oleksii Kuchaiev, Aleksandar Stevanovic, Wayne B. Hayes, Natasa Przulj
2011 J jnl
Integrative network alignment reveals large regions of global network similarity in yeast and human.
Bioinform.
Oleksii Kuchaiev, Natasa Przulj
2011 J jnl
Introduction to the Special Issue on Biological Networks.
Internet Math.
Natasa Przulj
2010 J jnl
An integrative approach to modeling biological networks.
J. Integr. Bioinform.
Vesna Memisevic, Tijana Milenkovic, Natasa Przulj
2010 J jnl
Biological network comparison using graphlet degree distribution.
Bioinform.
Natasa Przulj
2010 J jnl
Complementarity of network and sequence information in homologous proteins.
J. Integr. Bioinform.
Vesna Memisevic, Tijana Milenkovic, Natasa Przulj
2010 — ch.
From Topology to Phenotype in Protein-Protein Interaction Networks.
Network Science
Natasa Przulj
2010 Misc conf
Geometric Evolutionary Dynamics of Protein Interaction Networks.
Pacific Symposium on Biocomputing
Natasa Przulj, Oleksii Kuchaiev, Aleksandar Stevanovic, Wayne B. Hayes
2010 J jnl
Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets.
BMC Syst. Biol.
Hsiang Ho, Tijana Milenkovic, Vesna Memisevic, Jayavani Aruri, Natasa Przulj, Anand K. Ganesan
2009 J jnl
Geometric De-noising of Protein-Protein Interaction Networks.
PLoS Comput. Biol.
Oleksii Kuchaiev, Marija Rasajski, Desmond J. Higham, Natasa Przulj
2009 Misc conf
Learning the Structure of Protein-Protein Interaction Networks.
Pacific Symposium on Biocomputing
Oleksii Kuchaiev, Natasa Przulj
2008 J jnl
Fitting a geometric graph to a protein-protein interaction network.
Bioinform.
Desmond J. Higham, Marija Rasajski, Natasa Przulj
2008 J jnl
GraphCrunch: A tool for large network analyses.
BMC Bioinform.
Tijana Milenkovic, Jason Lai, Natasa Przulj
2007 J jnl
Biological network comparison using graphlet degree distribution.
Bioinform.
Natasa Przulj
2007 J jnl
Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution.
PLoS Comput. Biol.
Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp
2006 J jnl
Efficient estimation of graphlet frequency distributions in protein-protein interaction networks.
Bioinform.
Natasa Przulj, Derek G. Corneil, Igor Jurisica
2006 — conf
Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation.
Systems Biology and Computational Proteomics
Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp
2005 J jnl
2-Tree probe interval graphs have a large obstruction set.
Discret. Appl. Math.
Natasa Przulj, Derek G. Corneil
2005 — —
Analyzing large biological networks: protein-protein interactions example.
Natasa Przulj
2004 J jnl
Functional topology in a network of protein interactions.
Bioinform.
Natasa Przulj, Dennis A. Wigle, Igor Jurisica
2004 J jnl
Hereditary dominating pair graphs.
Discret. Appl. Math.
Natasa Przulj, Derek G. Corneil, Ekkehard Köhler
2004 J jnl
Modeling interactome: scale-free or geometric?.
Bioinform.
Natasa Przulj, Derek G. Corneil, Igor Jurisica
2004 J jnl
Protein complex prediction via cost-based clustering.
Bioinform.
Andrew D. King, Natasa Przulj, Igor Jurisica
1998 J jnl
Minimum Average Time Broadcast Graphs.
Parallel Process. Lett.
Arthur L. Liestman, Natasa Przulj