Natarajan Kannan

15 papers A* 1Misc 1Journal 11Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Using explainable machine learning to uncover the kinase-substrate interaction landscape.
Bioinform.
Zhongliang Zhou, Wayland Yeung, Saber Soleymani, Nathan Gravel, Mariah Salcedo, Sheng Li, Natarajan Kannan
2023 J jnl
Alignment-free estimation of sequence conservation for identifying functional sites using protein sequence embeddings.
Briefings Bioinform.
Wayland Yeung, Zhongliang Zhou, Sheng Li, Natarajan Kannan
2023 J jnl
Phosformer: an explainable transformer model for protein kinase-specific phosphorylation predictions.
Bioinform.
Zhongliang Zhou, Wayland Yeung, Nathan Gravel, Mariah Salcedo, Saber Soleymani, Sheng Li, Natarajan Kannan
2023 J jnl
Tree visualizations of protein sequence embedding space enable improved functional clustering of diverse protein superfamilies.
Briefings Bioinform.
Wayland Yeung, Zhongliang Zhou, Liju Mathew, Nathan Gravel, Rahil Taujale, Brady O'boyle, Mariah Salcedo, Aarya Venkat, William Lanzilotta, Sheng Li, Natarajan Kannan
2023 J jnl
XAI meets Biology: A Comprehensive Review of Explainable AI in Bioinformatics Applications.
CoRR
Zhongliang Zhou, Mengxuan Hu, Mariah Salcedo, Nathan Gravel, Wayland Yeung, Aarya Venkat, Dongliang Guo, Jielu Zhang, Natarajan Kannan, Sheng Li
2022 J jnl
PDBe-KB: collaboratively defining the biological context of structural data.
Nucleic Acids Res.
Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2021 J jnl
KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases.
BMC Bioinform.
Liang-Chin Huang, Rahil Taujale, Nathan Gravel, Aarya Venkat, Wayland Yeung, Dominic P. Byrne, Patrick A. Eyers, Natarajan Kannan
2020 J jnl
PDBe-KB: a community-driven resource for structural and functional annotations.
Nucleic Acids Res.
Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2020 J jnl
Quantitative Structure-Mutation-Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction.
BMC Bioinform.
Liang-Chin Huang, Wayland Yeung, Ye Wang, Huimin Cheng, Aarya Venkat, Sheng Li, Ping Ma, Khaled Rasheed, Natarajan Kannan
2017 J jnl
Classifying kinase conformations using a machine learning approach.
BMC Bioinform.
Daniel Ian McSkimming, Khaled Rasheed, Natarajan Kannan
2015 — conf
Creating Biomedical Ontologies Using mOntage.
DILS
Shima Dastgheib, Daniel Ian McSkimming, Natarajan Kannan, Krys J. Kochut
2014 J jnl
Prediction and Prioritization of Rare Oncogenic Mutations in the Cancer Kinome Using Novel Features and Multiple Classifiers.
PLoS Comput. Biol.
Man Chon U, Eric Talevich, Samiksha Katiyar, Khaled Rasheed, Natarajan Kannan
2011 — conf
ProKinO: A Framework for Protein Kinase Ontology.
BIBM
Gurinder Pal Singh Gosal, Natarajan Kannan, Krys J. Kochut
2006 A* conf
Live URLs: breathing life into URLs.
WWW
Natarajan Kannan, Toufeeq Hussain
2002 Misc conf
Dead-Block Elimination in Cache: A Mechanism to Reduce I-cache Power Consumption in High Performance Microprocessors.
HiPC
Mohan G. Kabadi, Natarajan Kannan, Palanidaran Chidambaram, Suriya Narayanan, M. Subramanian, Ranjani Parthasarathi