Natarajan Kannan

15 papers A* 1Misc 1Journal 11Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Bioinform.
Zhongliang Zhou, Wayland Yeung, Saber Soleymani, Nathan Gravel, Mariah Salcedo, Sheng Li, Natarajan Kannan
2023 J jnl
Briefings Bioinform.
Wayland Yeung, Zhongliang Zhou, Sheng Li, Natarajan Kannan
2023 J jnl
Bioinform.
Zhongliang Zhou, Wayland Yeung, Nathan Gravel, Mariah Salcedo, Saber Soleymani, Sheng Li, Natarajan Kannan
2023 J jnl
Briefings Bioinform.
Wayland Yeung, Zhongliang Zhou, Liju Mathew, Nathan Gravel, Rahil Taujale, Brady O'boyle, Mariah Salcedo, Aarya Venkat, William Lanzilotta, Sheng Li, Natarajan Kannan
2023 J jnl
CoRR
Zhongliang Zhou, Mengxuan Hu, Mariah Salcedo, Nathan Gravel, Wayland Yeung, Aarya Venkat, Dongliang Guo, Jielu Zhang, Natarajan Kannan, Sheng Li
2022 J jnl
Nucleic Acids Res.
Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2021 J jnl
BMC Bioinform.
Liang-Chin Huang, Rahil Taujale, Nathan Gravel, Aarya Venkat, Wayland Yeung, Dominic P. Byrne, Patrick A. Eyers, Natarajan Kannan
2020 J jnl
Nucleic Acids Res.
Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2020 J jnl
BMC Bioinform.
Liang-Chin Huang, Wayland Yeung, Ye Wang, Huimin Cheng, Aarya Venkat, Sheng Li, Ping Ma, Khaled Rasheed, Natarajan Kannan
2017 J jnl
BMC Bioinform.
Daniel Ian McSkimming, Khaled Rasheed, Natarajan Kannan
2015 conf
DILS
Shima Dastgheib, Daniel Ian McSkimming, Natarajan Kannan, Krys J. Kochut
2014 J jnl
PLoS Comput. Biol.
Man Chon U, Eric Talevich, Samiksha Katiyar, Khaled Rasheed, Natarajan Kannan
2011 conf
BIBM
Gurinder Pal Singh Gosal, Natarajan Kannan, Krys J. Kochut
2006 A* conf
WWW
Natarajan Kannan, Toufeeq Hussain
2002 Misc conf
HiPC
Mohan G. Kabadi, Natarajan Kannan, Palanidaran Chidambaram, Suriya Narayanan, M. Subramanian, Ranjani Parthasarathi
redb/extractors/js_extractors/js_suspicious_apis.py
← Index redb/extractors/js_extractors/js_suspicious_apis.py python
import inspect
from datetime import datetime, timezone
from typing import Any

from redb.extractors.enum import Tag
from redb.extractors.js_extractor import JSExtractor
from redb.extractors.js_extractors.js_patterns import CATEGORIES, PATTERNS


# Backwards-compatible export: `{category: [(raw_pattern_string, api_name), ...]}`
# in canonical PATTERNS insertion order (code_execution, network, filesystem,
# process, registry, crypto_encoding, dom_manipulation). Kept so external
# callers (notably JSDeobfuscationExtractor pre-cleanup) keep working until
# they are migrated to PATTERNS directly.
SUSPICIOUS_APIS: "dict[str, list[tuple[str, str]]]" = {}
for _name, _compiled in PATTERNS.items():
    SUSPICIOUS_APIS.setdefault(CATEGORIES[_name], []).append((_compiled.pattern, _name))


class JSSuspiciousAPIsExtractor(JSExtractor):

    def __init__(
        self, filepath, log, exporters=None, index_prefix=None,
        known_benign=False, known_malicious=False, source=None, context=None,
    ):
        super().__init__(
            filepath, log, exporters, index_prefix,
            known_benign, known_malicious, source, context=context,
        )
        self.api_findings = None
        self.log.debug(inspect.currentframe().f_code.co_name)

    def tag(self):
        return Tag.JS_SUSPICIOUS_APIS.value

    def _get_context_snippet(self, line, max_len=200):
        """Get a truncated context snippet around a match."""
        line = line.strip()
        if len(line) > max_len:
            return line[:max_len] + "..."
        return line

    def extract(self):
        src = self.js_source
        if not src:
            return None

        # Pass 1: shared per-sample scan over the raw source. The dict contains
        # entries for both PATTERNS and FEATURE_PATTERNS; the loop below only
        # consults PATTERNS keys, so feature-only entries are ignored.
        raw_scan = self._context.scan or {}
        raw_lines = self.lines

        # Pass 2: same patterns over the deobfuscated text, when the
        # deobfuscator produced something meaningfully different. APIs hidden
        # behind one obfuscation layer (Vjw0rm-style array.join + eval,
        # Dean-Edwards packers, jjencode, ...) only surface here. The scan is
        # cached on JSContext so JSDeobfuscationExtractor (which computes the
        # new_apis_found diff) reuses the same result.
        deobf_scan = self._context.scan_deobfuscated
        if deobf_scan:
            deobf_text, _ = self._context.deobfuscated
            deobf_lines = deobf_text.splitlines()
        else:
            deobf_lines = []

        findings = []
        # Iterate PATTERNS in canonical order so output is deterministic and
        # matches the historical category/pattern ordering. For each api_name,
        # raw findings take precedence; if an API is found only in the
        # deobfuscated text, we surface it as a row tagged revealed_by_deobf=1
        # with line numbers / snippets pulled from the deobfuscated source.
        for api_name in PATTERNS:
            raw_info = raw_scan.get(api_name)
            if raw_info:
                line_numbers = raw_info["lines"]
                lines_for_snippets = raw_lines
                revealed_by_deobf = 0
            else:
                deobf_info = deobf_scan.get(api_name)
                if not deobf_info:
                    continue
                line_numbers = deobf_info["lines"]
                lines_for_snippets = deobf_lines
                revealed_by_deobf = 1

            snippets = [
                self._get_context_snippet(lines_for_snippets[ln - 1])
                for ln in line_numbers[:3]
                if 0 < ln <= len(lines_for_snippets)
            ]
            findings.append({
                "api_name": api_name,
                "api_category": CATEGORIES[api_name],
                # Historical semantics: count = number of unique lines with a
                # match, not total in-source match count.
                "call_count": len(line_numbers),
                "line_numbers": line_numbers,
                "context_snippet": " | ".join(snippets),
                "revealed_by_deobf": revealed_by_deobf,
            })

        if not findings:
            return None

        self.api_findings = findings
        return findings

    def prepare_export_data(self, exporter_type: str) -> Any:
        if exporter_type == "ClickHouseExporter":
            if not self.api_findings:
                return None

            current_time = datetime.now(timezone.utc)
            data = []
            for f in self.api_findings:
                data.append([
                    self.sha256,
                    f['api_name'],
                    f['api_category'],
                    f['call_count'],
                    f['line_numbers'],
                    f['context_snippet'],
                    f['revealed_by_deobf'],
                    current_time,
                ])

            column_names = [
                "sha256", "api_name", "api_category",
                "call_count", "line_numbers", "context_snippet",
                "revealed_by_deobf",
                "analysis_date",
            ]

            column_type_names = [
                "FixedString(64)", "String", "LowCardinality(String)",
                "UInt32", "Array(UInt32)", "String",
                "UInt8",
                "DateTime64(3, 'UTC')",
            ]

            return (data, column_names, column_type_names)

    def get_clickhouse_table(self) -> str:
        return "redb_js_suspicious_apis"