Narayanaswamy Srinivasan

34 papers Journal 33Unranked 1
YearRankTypeTitle / Venue / Authors
2022 J jnl
DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins.
Database J. Biol. Databases Curation
Neha V. Kalmankar, Murugavel Pavalam, Sowmya Indrakumar, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
2022 J jnl
Shaking the β-Bulges.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern
2019 J jnl
iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach.
Source Code Biol. Medicine
Guilhem Faure, Agnel Praveen Joseph, Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern
2018 J jnl
Recognition of sites of functional specialisation in all known eukaryotic protein kinase families.
PLoS Comput. Biol.
Raju Kalaivani, Raju Reema, Narayanaswamy Srinivasan
2018 J jnl
Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains.
PLoS Comput. Biol.
Sneha Vishwanath, Alexandre G. de Brevern, Narayanaswamy Srinivasan
2015 J jnl
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
Database J. Biol. Databases Curation
Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend
2015 J jnl
NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection.
Nucleic Acids Res.
Richa Mudgal, Sankaran Sandhya, Gayatri Kumar, Ramanathan Sowdhamini, Nagasuma R. Chandra, Narayanaswamy Srinivasan
2015 J jnl
SInCRe - structural interactome computational resource for
Database J. Biol. Databases Curation
Rahul Metri, Sridhar Hariharaputran, Gayatri Ramakrishnan, Praveen Anand, Upadhyayula S. Raghavender, Bernardo Ochoa-Montaño, Alicia P. Higueruelo, Ramanathan Sowdhamini, Nagasuma R. Chandra, Tom L. Blundell, Narayanaswamy Srinivasan
2014 J jnl
CLAP: A web-server for automatic classification of proteins with special reference to multi-domain proteins.
BMC Bioinform.
Mutharasu Gnanavel, Prachi Mehrotra, Ramaswamy Rakshambikai, Juliette Martin, Narayanaswamy Srinivasan, Ramachandra M. Bhaskara
2014 J jnl
Repertoire of protein kinases Encoded in the genome of zebrafish shows remarkably Large Population of PIM kinases.
J. Bioinform. Comput. Biol.
R. Rakshambikai, Narayanaswamy Srinivasan, Rupali A. Gadkari
2013 J jnl
DoSA: Database of Structural Alignments.
Database J. Biol. Databases Curation
Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard O. Offmann, Alexandre G. de Brevern, Narayanaswamy Srinivasan
2011 J jnl
AlignHUSH : Alignment of HMMs Using Structure and Hydrophobicity information.
BMC Bioinform.
Oruganty Krishnadev, Narayanaswamy Srinivasan
2011 J jnl
Influence of Genomic and Other Biological Data Sets in the Understanding of Protein Structures, Functions and Interactions.
Int. J. Knowl. Discov. Bioinform.
Narayanaswamy Srinivasan, Garima Agarwal, Ramachandra M. Bhaskara, Rupali A. Gadkari, Oruganty Krishnadev, B. Lakshmi, Swapnil Mahajan, Smita Mohanty, Richa Mudgal, R. Rakshambikai, Sankaran Sandhya, G. Sudha, L. S. Swapna, N. Tyagi
2011 J jnl
iPBA: a tool for protein structure comparison using sequence alignment strategies.
Nucleic Acids Res.
Jean-Christophe Gelly, Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre G. de Brevern
2010 J jnl
Prediction of Protein-Protein Interactions Between Human Host and Two Mycobacterial Organisms.
Int. J. Knowl. Discov. Bioinform.
Oruganty Krishnadev, Shveta Bisht, Narayanaswamy Srinivasan
2009 — conf
How effective is the data on co-occurrence of domains in multi-domain proteins in prediction of protein-protein interactions?
GENSiPS
Smita Mohanty, Narayanaswamy Srinivasan
2009 J jnl
Molecular and Structural Basis of Drift in the Functions of Closely-Related Homologous Enzyme Domains: Implications for Function Annotation Based on Homology Searches and Structural Genomics.
Silico Biol.
Ambrish Roy, Narayanaswamy Srinivasan, Venkatraman S. Gowri
2008 J jnl
A Data Integration Approach to Predict Host-Pathogen Protein-Protein Interactions: Application to Recognize Protein Interactions between Human and a Malarial Parasite.
Silico Biol.
Oruganty Krishnadev, Narayanaswamy Srinivasan
2007 J jnl
PIC: Protein Interactions Calculator.
Nucleic Acids Res.
K. G. Tina, Rana Bhadra, Narayanaswamy Srinivasan
2006 J jnl
Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains.
Nucleic Acids Res.
Rana Bhadra, Sankaran Sandhya, K. R. Abhinandan, Saikat Chakrabarti, Ramanathan Sowdhamini, Narayanaswamy Srinivasan
2006 J jnl
HARMONY: a server for the assessment of protein structures.
Nucleic Acids Res.
Ganesan Pugalenthi, Khader Shameer, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
2006 J jnl
MulPSSM: a database of multiple position-specific scoring matrices of protein domain families.
Nucleic Acids Res.
V. S. Gowri, Oruganty Krishnadev, C. S. Swamy, Narayanaswamy Srinivasan
2006 J jnl
Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.
Nucleic Acids Res.
Manoj Tyagi, P. Sharma, C. S. Swamy, F. Cadet, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Bernard O. Offmann
2005 J jnl
A New Domain Family in the Superfamily of Alkaline Phosphatases.
Silico Biol.
Rana Bhadra, Narayanaswamy Srinivasan, Shashi B. Pandit
2005 J jnl
PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families.
Nucleic Acids Res.
Oruganty Krishnadev, N. Rekha, Shashi B. Pandit, S. Abhiman, Smita Mohanty, L. S. Swapna, Swanand P. Gore, Narayanaswamy Srinivasan
2005 J jnl
Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues.
Bioinform.
B. Anand, V. S. Gowri, Narayanaswamy Srinivasan
2004 J jnl
Identification and analysis of a new family of bacterial serine proteinases.
Silico Biol.
Shashi B. Pandit, Narayanaswamy Srinivasan
2004 J jnl
KinG: a database of protein kinases in genomes.
Nucleic Acids Res.
A. Krupa, K. R. Abhinandan, Narayanaswamy Srinivasan
2004 J jnl
Recognition of remotely related structural homologues using sequence profiles of aligned homologous protein structures.
Silico Biol.
Seema Namboori, Narayanaswamy Srinivasan, Shashi B. Pandit
2004 J jnl
SUPFAM: A database of sequence superfamilies of protein domains.
BMC Bioinform.
Shashi B. Pandit, Rana Bhadra, V. S. Gowri, S. Balaji, B. Anand, Narayanaswamy Srinivasan
2003 J jnl
Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database.
Nucleic Acids Res.
V. S. Gowri, Shashi B. Pandit, P. S. Karthik, Narayanaswamy Srinivasan, S. Balaji
2002 J jnl
SUPFAM - a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes.
Nucleic Acids Res.
Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, Ramanathan Sowdhamini, Narayanaswamy Srinivasan
2001 J jnl
PALI - a database of Phylogeny and ALIgnment of homologous protein structures.
Nucleic Acids Res.
S. Balaji, S. Sujatha, S. Sai Chetan Kumar, Narayanaswamy Srinivasan
2001 J jnl
PALI: a database of alignments and phylogeny of homologous protein structures.
Bioinform.
S. Sujatha, S. Balaji, Narayanaswamy Srinivasan