Narayan Ganesan

17 papers C 1Journal 6Unranked 10
YearRankTypeTitle / Venue / Authors
2018 J jnl
CUDAMPF++: A Proactive Resource Exhaustion Scheme for Accelerating Homologous Sequence Search on CUDA-Enabled GPU.
IEEE Trans. Parallel Distributed Syst.
Hanyu Jiang, Narayan Ganesan, Yu-Dong Yao
2017 J jnl
CUDAMPF++: A Proactive Resource Exhaustion Scheme for Accelerating Homologous Sequence Search on CUDA-enabled GPU.
CoRR
Hanyu Jiang, Narayan Ganesan, Yu-Dong Yao
2016 J jnl
CUDAMPF: a multi-tiered parallel framework for accelerating protein sequence search in HMMER on CUDA-enabled GPU.
BMC Bioinform.
Hanyu Jiang, Narayan Ganesan
2016 — conf
Computational Framework for in-Silico Study of Virtual Cell Biology via Process Simulation and Multiscale Modeling.
BCB
Hanyu Jiang, Morisa Manzella, Luka Djapic, Narayan Ganesan
2016 J jnl
Process Simulation of Complex Biological Pathways in Physical Reactive Space and Reformulated for Massively Parallel Computing Platforms.
IEEE ACM Trans. Comput. Biol. Bioinform.
Narayan Ganesan, Jie Li, Vishakha Sharma, Hanyu Jiang, Adriana B. Compagnoni
2015 — conf
Fine-Grained Acceleration of HMMER 3.0 via Architecture-Aware Optimization on Massively Parallel Processors.
IPDPS Workshops
Hanyu Jiang, Narayan Ganesan
2014 — conf
Process Simulation of Complex Biochemical Pathways in Explicit 3D Space Enabled by Heterogeneous Computing Platform.
IPDPS Workshops
Jie Li, Amin Salighehdar, Narayan Ganesan
2014 — conf
Simulation of Complex Biochemical Pathways in 3D Process Space via Heterogeneous Computing Platform: Preliminary Results.
ARC
Jie Li, Amin Salighehdar, Narayan Ganesan
2013 C conf
Achieving decoherence suppression in open quantum systems by utilizing the model of environmental interactions.
ACC
Narayan Ganesan, Tzyh Jong Tarn
2013 J jnl
GPU-Enabled Macromolecular Simulation: Challenges and Opportunities.
Comput. Sci. Eng.
Michela Taufer, Narayan Ganesan, Sandeep Patel
2012 — conf
Simulation and study of large-scale bacteria-materials interactions via BioScape enabled by GPUs.
BCB
Jie Li, Vishakha Sharma, Narayan Ganesan, Adriana B. Compagnoni
2011 — conf
FENZI: GPU-Enabled Molecular Dynamics Simulations of Large Membrane Regions Based on the CHARMM Force Field and PME.
IPDPS Workshops
Narayan Ganesan, Michela Taufer, Brad A. Bauer, Sandeep Patel
2011 J jnl
Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs).
J. Comput. Chem.
Narayan Ganesan, Brad A. Bauer, Timothy R. Lucas, Sandeep Patel, Michela Taufer
2010 — conf
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism.
BCB
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhler, Michela Taufer
2009 — conf
Sorting on architecturally diverse computer systems.
HPRCTA@SC
Roger D. Chamberlain, Narayan Ganesan
2007 — conf
Quantum internal model principle and enhanced disturbance decoupling.
CDC
Narayan Ganesan, Tzyh Jong Tarn
2005 — conf
Control of decoherence in open quantum systems using feedback.
CDC/ECC
Narayan Ganesan, Tzyh Jong Tarn