Naoki Tomii

12 papers Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Int. J. Comput. Assist. Radiol. Surg.
Yuriko Iyama, Yudai Takahashi, Jiahe Chen, Takumi Noda, Kazuaki Hara, Etsuko Kobayashi, Ichiro Sakuma, Naoki Tomii
2025 J jnl
CoRR
Jiahe Chen, Naoki Tomii, Ichiro Sakuma, Etsuko Kobayashi
2024 J jnl
Int. J. Comput. Assist. Radiol. Surg.
Wenran Cai, Kazuaki Hara, Naoki Tomii, Etsuko Kobayashi, Takashi Ohya, Ichiro Sakuma
2024 J jnl
IEEE Robotics Autom. Lett.
Jiahe Chen, Etsuko Kobayashi, Ichiro Sakuma, Naoki Tomii
2024 conf
MICCAI (6)
Jiahe Chen, Etsuko Kobayashi, Ichiro Sakuma, Naoki Tomii
2023 J jnl
CoRR
Takumi Noda, Yuu Jinnai, Naoki Tomii, Takashi Azuma
2023 J jnl
Int. J. Comput. Assist. Radiol. Surg.
Jiahe Chen, Kazuaki Hara, Etsuko Kobayashi, Ichiro Sakuma, Naoki Tomii
2022 J jnl
J. Imaging
Gakuto Aoyama, Longfei Zhao, Shun Zhao, Xiao Xue, Yunxin Zhong, Haruo Yamauchi, Hiroyuki Tsukihara, Eriko Maeda, Kenji Ino, Naoki Tomii, Shu Takagi, Ichiro Sakuma, Minoru Ono, Takuya Sakaguchi
2022 J jnl
Comput. Biol. Medicine
Lei Ma, Naoki Tomii, Junchen Wang, Hidemichi Kiyomatsu, Hiroyuki Tsukihara, Etsuko Kobayashi, Ichiro Sakuma
2021 J jnl
Comput. Biol. Medicine
Naoki Tomii, Masatoshi Yamazaki, Takashi Ashihara, Kazuo Nakazawa, Nitaro Shibata, Haruo Honjo, Ichiro Sakuma
2019 conf
MLMECH/CVII-STENT@MICCAI
Bowen Fan, Naoki Tomii, Hiroyuki Tsukihara, Eriko Maeda, Haruo Yamauchi, Kan Nawata, Asuka Hatano, Shu Takagi, Ichiro Sakuma, Minoru Ono
2016 J jnl
IEEE Trans. Biomed. Eng.
Naoki Tomii, Masatoshi Yamazaki, Tatsuhiko Arafune, Haruo Honjo, Nitaro Shibata, Ichiro Sakuma
s3-storage/s3_test.py
← Index s3-storage/s3_test.py python
#!/usr/bin/env python3
"""
Simple script to test S3 connectivity and download.
Usage: python s3_test.py
"""

import os
import time
import tempfile
from minio import Minio
from minio.error import S3Error
from dotenv import load_dotenv

# Load environment variables
load_dotenv()

def get_minio_client():
    """Create and return a Minio client using credentials from .env file"""
    endpoint = os.getenv("S3_ENDPOINT")
    access_key = os.getenv("S3_ACCESS_KEY")
    secret_key = os.getenv("S3_SECRET_KEY")
    secure = True 
    
    print(f"Connecting to S3 endpoint: {endpoint} (secure={secure})")
    
    return Minio(
        endpoint=endpoint,
        access_key=access_key,
        secret_key=secret_key,
        secure=secure
    )

def test_connection():
    """Test basic connectivity to S3"""
    try:
        client = get_minio_client()
        
        # Try to list buckets as a basic connectivity test
        buckets = client.list_buckets()
        print(f"Successfully connected to S3. Found {len(buckets)} buckets:")
        for bucket in buckets:
            print(f"  - {bucket.name}")
        
        return client
    except Exception as e:
        print(f"Failed to connect to S3: {e}")
        return None

def test_bucket_access(client, bucket_name):
    """Test access to a specific bucket"""
    try:
        exists = client.bucket_exists(bucket_name)
        if exists:
            print(f"Bucket '{bucket_name}' exists and is accessible")
            
            # List a few objects to verify access
            count = 0
            objects = []
            for obj in client.list_objects(bucket_name, recursive=True):
                print(f"  - {obj.object_name} ({obj.size} bytes)")
                objects.append(obj)
                count += 1
                if count >= 5:
                    break
            
            print(f"Found at least {len(objects)} objects in bucket")
            return objects
        else:
            print(f"Bucket '{bucket_name}' does not exist or is not accessible")
            return []
    except Exception as e:
        print(f"Error accessing bucket '{bucket_name}': {e}")
        return []

def test_download(client, bucket_name, object_name):
    """Test downloading a specific object"""
    try:
        print(f"Attempting to download: {object_name}")
        start_time = time.time()
        
        # Create a temporary file to store the downloaded object
        with tempfile.NamedTemporaryFile(delete=False) as temp_file:
            temp_path = temp_file.name
        
        # Download the object
        client.fget_object(bucket_name, object_name, temp_path)
        
        # Check if the file was downloaded successfully
        file_size = os.path.getsize(temp_path)
        elapsed_time = time.time() - start_time
        
        print(f"Download successful: {file_size} bytes in {elapsed_time:.2f} seconds")
        print(f"Average download speed: {file_size/elapsed_time/1024:.2f} KB/s")
        
        # Clean up
        os.unlink(temp_path)
        return True
    except S3Error as e:
        print(f"S3 Error during download: {e}")
        return False
    except Exception as e:
        print(f"Error downloading object: {e}")
        return False

def main():
    """Main function to run all tests"""
    print("=== S3 Connectivity Test ===")
    
    # Test basic connectivity
    client = test_connection()
    if not client:
        return
    
    # Get bucket name from environment variable
    bucket_name = "redb"
    print(f"\n=== Testing Access to Bucket: {bucket_name} ===")
    objects = test_bucket_access(client, bucket_name)
    
    if objects:
        # Test downloading the first object
        first_object = objects[0].object_name
        print(f"\n=== Testing Download of Object: {first_object} ===")
        test_download(client, bucket_name, first_object)
        
        # If the first one worked, let's try a specific file from the error log
        print(f"\n=== Testing Download of Specific Object ===")
        specific_object = "00/06/00062073114defac39cb7ab9cb99a0b77c535a09a241c60d47ddd0b6431629f1.zip"
        test_download(client, bucket_name, specific_object)

if __name__ == "__main__":
    main()