Naoki Nariai - RankMe

15 papers Misc 1Journal 9Unranked 5

Year	Rank	Type	Title / Venue / Authors
2020	J	`jnl`	A crowdsourced set of curated structural variants for the human genome. PLoS Comput. Biol. Lesley M. Chapman, Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi, Christopher M. Watson, Christos Proukakis, Wayne E. Clarke, Naoki Nariai, Eric T. Dawson, Garan Jones, Daniel J. Blankenberg, Christian Brueffer, Chunlin Xiao, Sree Rohit Raj Kolora, Noah Alexander, Paul Wolujewicz, Azza E. Ahmed, Graeme Smith, Saadlee Shehreen, Aaron M. Wenger, Marc Salit, Justin M. Zook
2017	J	`jnl`	Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data. BMC Bioinform. William W. Greenwald, He Li, Erin N. Smith, Paola Benaglio, Naoki Nariai, Kelly A. Frazer
2016	J	`jnl`	A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes. BMC Genom. Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yosuke Kawai, Masao Nagasaki
2015	J	`jnl`	Estimating copy numbers of alleles from population-scale high-throughput sequencing data. BMC Bioinform. Takahiro Mimori, Naoki Nariai, Kaname Kojima, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Masao Nagasaki
2015	J	`jnl`	HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data. BMC Genom. Naoki Nariai, Kaname Kojima, Sakae Saito, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Jun Yasuda, Masao Nagasaki
2014	—	`conf`	HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads. AlCoB Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai, Masao Nagasaki
2014	—	`conf`	SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints. AlCoB Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya, Masao Nagasaki
2013	J	`jnl`	A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads. Bioinform. Kaname Kojima, Naoki Nariai, Takahiro Mimori, Mamoru Takahashi, Yumi Yamaguchi-Kabata, Yukuto Sato, Masao Nagasaki
2013	J	`jnl`	TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference. Bioinform. Naoki Nariai, Osamu Hirose, Kaname Kojima, Masao Nagasaki
2013	J	`jnl`	iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data. BMC Syst. Biol. Takahiro Mimori, Naoki Nariai, Kaname Kojima, Mamoru Takahashi, Akira Ono, Yukuto Sato, Yumi Yamaguchi-Kabata, Masao Nagasaki
2008	—	`conf`	Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction. BIBM Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, David Gold, Eric D. Kolaczyk
2008	J	`jnl`	Integration of relational and hierarchical network information for protein function prediction. BMC Bioinform. Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, Eric D. Kolaczyk
2005	—	`conf`	Estimating Gene Networks from Expression Data and Binding Location Data via Boolean Networks. ICCSA (3) Osamu Hirose, Naoki Nariai, Yoshinori Tamada, Hideo Bannai, Seiya Imoto, Satoru Miyano
2005	—	`conf`	Estimating gene regulatory networks and protein-protein interactions of ECCB/JBI Naoki Nariai, Yoshinori Tamada, Seiya Imoto, Satoru Miyano
2004	Misc	`conf`	Using Protein-Protein Interactions for Refining Gene Networks Estimated from Microarray Data by Bayesian Networks. Pacific Symposium on Biocomputing Naoki Nariai, Sunyong Kim, Seiya Imoto, Satoru Miyano