Nancy Andreasen

14 papers B 3Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2013 J jnl
Frontiers Neuroinformatics
Wen Li, Nancy Andreasen, Peg Nopoulos, Vincent Magnotta
2013 J jnl
Neuroinformatics
Randy L. Gollub, Jody M. Shoemaker, Margaret D. King, Tonya White, Stefan Ehrlich, Scott R. Sponheim, Vincent P. Clark, Jessica A. Turner, Bryon A. Mueller, Vincent Magnotta, Daniel S. O'Leary, Beng-Choon Ho, Stefan Brauns, Dara S. Manoach, Larry Seidman, Juan R. Bustillo, John Lauriello, Henry Jeremy Bockholt, Kelvin O. Lim, Bruce R. Rosen, S. Charles Schulz, Vince D. Calhoun, Nancy Andreasen
2013 J jnl
NeuroImage
Jing Sui, Hao He, Godfrey D. Pearlson, Tülay Adali, Kent A. Kiehl, Qingbao Yu, Vincent P. Clark, Eduardo Castro, Tonya White, Bryon A. Mueller, Beng-Choon Ho, Nancy Andreasen, Vince D. Calhoun
2011 B conf
Image Processing
Wen Li, Luis Ibáñez, Arnaud Gelas, B. T. Thomas Yeo, Marc Niethammer, Nancy Andreasen, Vincent A. Magnotta
2011 J jnl
NeuroImage
Ronald Pierson, Hans J. Johnson, Gregory Harris, Helen Keefe, Jane S. Paulsen, Nancy Andreasen, Vincent Magnotta
2011 J jnl
Neuroinformatics
Elissaios Karageorgiou, S. Charles Schulz, Randy L. Gollub, Nancy Andreasen, Beng-Choon Ho, John Lauriello, Vince D. Calhoun, Henry Jeremy Bockholt, Scott R. Sponheim, Apostolos P. Georgopoulos
2011 conf
ISBI
Wen Li, Luis Ibáñez, Nancy Andreasen, Vincent Magnotta
2010 J jnl
NeuroImage
Andrew Michael, Stefi A. Baum, Tonya White, Oguz Demirci, Nancy Andreasen, Judith M. Segall, Rex E. Jung, Godfrey D. Pearlson, Vincent P. Clark, Randy L. Gollub, S. Charles Schulz, Joshua L. Roffman, Kelvin O. Lim, Beng-Choon Ho, Henry Jeremy Bockholt, Vince D. Calhoun
2010 J jnl
NeuroImage
Anastasia Yendiki, Douglas N. Greve, Stuart R. Wallace, Mark G. Vangel, Henry Jeremy Bockholt, Bryon A. Mueller, Vincent Magnotta, Nancy Andreasen, Dara S. Manoach, Randy L. Gollub
2010 B conf
Image Processing
Madhura Ingalhalikar, Nancy Andreasen, Jinsuh Kim, Andrew L. Alexander, Vincent A. Magnotta
2009 J jnl
NeuroImage
Oguz Demirci, Michael C. Stevens, Nancy Andreasen, Andrew Michael, Jingyu Liu, Tonya White, Godfrey D. Pearlson, Vincent P. Clark, Vince D. Calhoun
2008 J jnl
NeuroImage
Stephanie Powell, Vincent Magnotta, Hans J. Johnson, Vamsi K. Jammalamadaka, Ronald Pierson, Nancy Andreasen
2006 J jnl
Medical Biol. Eng. Comput.
Tao Song, Charles Gasparovic, Nancy Andreasen, Henry Jeremy Bockholt, Mo Jamshidi, Roland R. Lee, Mingxiong Huang
2006 B conf
Image Processing
Stephanie Powell, Vincent Magnotta, Hans J. Johnson, Nancy Andreasen
tests/unit/test_apk_jadx_wrapper.py
← Index tests/unit/test_apk_jadx_wrapper.py python
"""
Unit tests for JADX wrapper subprocess management and output parsing.

All subprocess calls are mocked — no JADX/Java installation required.
"""
import os
import tempfile
import textwrap

import pytest
from unittest.mock import MagicMock, patch, call

pytestmark = [pytest.mark.unit, pytest.mark.apk, pytest.mark.decompile]


class TestJADXDecompiler:
    """Tests for JADXDecompiler subprocess wrapper."""

    @patch.dict(os.environ, {}, clear=False)
    def test_init_defaults(self):
        os.environ.pop("JADX_PATH", None)
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        assert j.jadx_path == "jadx"
        assert j.timeout == 300

    def test_init_custom_path(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler(jadx_path="/usr/local/bin/jadx", timeout=300)
        assert j.jadx_path == "/usr/local/bin/jadx"
        assert j.timeout == 300

    def test_init_from_env(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        with patch.dict(os.environ, {"JADX_PATH": "/opt/jadx/bin/jadx", "JADX_TIMEOUT": "120"}):
            j = JADXDecompiler()
            assert j.jadx_path == "/opt/jadx/bin/jadx"
            assert j.timeout == 120

    @patch("subprocess.Popen")
    def test_decompile_success(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("output", "")
        mock_proc.returncode = 0
        mock_popen.return_value = mock_proc

        j = JADXDecompiler()
        result = j.decompile("/test.apk", "/output")
        assert result is True

    @patch("subprocess.Popen")
    def test_decompile_nonzero_exit_no_sources(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("", "error msg")
        mock_proc.returncode = 1
        mock_popen.return_value = mock_proc

        j = JADXDecompiler(log=MagicMock())
        result = j.decompile("/test.apk", "/nonexistent_output")
        assert result is False

    @patch("subprocess.Popen")
    def test_decompile_timeout(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        import subprocess
        mock_proc = MagicMock()
        mock_proc.communicate.side_effect = subprocess.TimeoutExpired(cmd="jadx", timeout=10)
        mock_proc.pid = 12345
        mock_popen.return_value = mock_proc

        with patch("os.getpgid", return_value=12345), \
             patch("os.killpg"):
            j = JADXDecompiler(timeout=10, log=MagicMock())
            result = j.decompile("/test.apk", "/output")
            assert result is False

    @patch("subprocess.Popen", side_effect=FileNotFoundError)
    def test_decompile_not_found(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler(log=MagicMock())
        result = j.decompile("/test.apk", "/output")
        assert result is False

    @patch("subprocess.Popen")
    def test_decompile_command_args(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("", "")
        mock_proc.returncode = 0
        mock_popen.return_value = mock_proc

        j = JADXDecompiler(jadx_path="/opt/jadx")
        j.decompile("/test.apk", "/output")

        cmd = mock_popen.call_args[0][0]
        assert cmd[0] == "/opt/jadx"
        assert "--no-res" in cmd
        assert "--no-imports" in cmd
        assert "--threads-count" in cmd
        assert "/test.apk" in cmd

    def test_parse_java_methods_empty_dir(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        result = j.parse_java_methods("/nonexistent")
        assert result == {}

    def test_parse_java_methods_with_files(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        with tempfile.TemporaryDirectory() as tmpdir:
            sources_dir = os.path.join(tmpdir, "sources", "com", "example")
            os.makedirs(sources_dir)

            java_content = textwrap.dedent("""\
                package com.example;

                public class MyClass {
                    public void doStuff(int x) {
                        System.out.println(x);
                    }

                    private String getName() {
                        return "test";
                    }
                }
            """)
            with open(os.path.join(sources_dir, "MyClass.java"), "w") as f:
                f.write(java_content)

            j = JADXDecompiler()
            methods = j.parse_java_methods(tmpdir)
            assert len(methods) >= 1

    def test_extract_methods_from_java(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        source = textwrap.dedent("""\
            public void foo(int x) {
                if (x > 0) {
                    System.out.println(x);
                }
            }
        """)
        j = JADXDecompiler()
        methods = j._extract_methods_from_java(source, "com.example.Test")
        assert len(methods) == 1
        key = list(methods.keys())[0]
        assert "foo" in key

    def test_is_method_declaration_valid(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        result = j._is_method_declaration("    public void foo(int x) {")
        assert result is not None
        assert result[0] == "foo"

    def test_is_method_declaration_control_flow(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        # 'if', 'for', etc. should not be recognized as methods
        assert j._is_method_declaration("        if (x > 0) {") is None
        assert j._is_method_declaration("        for (int i = 0; i < 10; i++) {") is None

    def test_is_method_declaration_static(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        result = j._is_method_declaration("    public static void main(String[] args) {")
        assert result is not None
        assert result[0] == "main"