Nagiza F. Samatova

138 papers A* 9A 19B 12C 10Misc 8Journal 35Unranked 44

Year	Rank	Type	Title / Venue / Authors
2022	J	`jnl`	Predictive models with end user preference. Stat. Anal. Data Min. Yifan Zhao, Xian Yang, Carolina Bolnykh, Steve Harenberg, Nodirbek Korchiev, Saavan Raj Yerramsetty, Bhanu Prasad Vellanki, Ramakanth Kodumagulla, Nagiza F. Samatova
2020	J	`jnl`	Group classification of the two-dimensional shallow water equations with the beta-plane approximation of coriolis parameter in Lagrangian coordinates. Commun. Nonlinear Sci. Numer. Simul. Sergey V. Meleshko, Nagiza F. Samatova
2018	A*	`conf`	An Intelligent and Hybrid Weighted Fuzzy Time Series Model Based on Empirical Mode Decomposition for Financial Markets Forecasting. ICDM Ruixin Yang, Junyi He, Mingyang Xu, Haoqi Ni, Paul Jones, Nagiza F. Samatova
2018	A*	`conf`	An Interpretable Generative Adversarial Approach to Classification of Latent Entity Relations in Unstructured Sentences. AAAI Shiou Tian Hsu, Changsung Moon, Paul Jones, Nagiza F. Samatova
2018	—	`conf`	Causal Relationship Prediction with Continuous Additive Noise Models. CD@KDD Mandar S. Chaudhary, Nagiza F. Samatova
2018	B	`conf`	Multilevel Heuristics for Rationale-Based Entity Relation Classification in Sentences. COLING Shiou Tian Hsu, Mandar S. Chaudhary, Nagiza F. Samatova
2017	—	`conf`	A Community-Driven Graph Partitioning Method for Constraint-Based Causal Discovery. COMPLEX NETWORKS Mandar S. Chaudhary, Stephen Ranshous, Nagiza F. Samatova
2017	—	`conf`	A Hybrid CNN-RNN Alignment Model for Phrase-Aware Sentence Classification. EACL (2) Shiou Tian Hsu, Changsung Moon, Paul Jones, Nagiza F. Samatova
2017	—	`conf`	A Lifelong Learning Topic Model Structured Using Latent Embeddings. ICSC Mingyang Xu, Ruixin Yang, Steve Harenberg, Nagiza F. Samatova
2017	A	`conf`	A Network-Fusion Guided Dashboard Interface for Task-Centric Document Curation. IUI Paul Jones, Shivani Sharma, Changsung Moon, Nagiza F. Samatova
2017	C	`conf`	An Intelligent Weighted Fuzzy Time Series Model Based on a Sine-Cosine Adaptive Human Learning Optimization Algorithm and Its Application to Financial Markets Forecasting. ADMA Ruixin Yang, Mingyang Xu, Junyi He, Stephen Ranshous, Nagiza F. Samatova
2017	—	`conf`	Efficient Outlier Detection in Hyperedge Streams Using MinHash and Locality-Sensitive Hashing. COMPLEX NETWORKS Stephen Ranshous, Mandar S. Chaudhary, Nagiza F. Samatova
2017	—	`conf`	Exchange Pattern Mining in the Bitcoin Transaction Directed Hypergraph. Financial Cryptography Workshops Stephen Ranshous, Cliff A. Joslyn, Sean Kreyling, Kathleen Nowak, Nagiza F. Samatova, Curtis L. West, Samuel Winters
2017	—	`conf`	Learning Contextual Embeddings for Knowledge Graph Completion. PACIS Changsung Moon, Steve Harenberg, John Slankas, Nagiza F. Samatova
2017	A	`conf`	Learning Entity Type Embeddings for Knowledge Graph Completion. CIKM Changsung Moon, Paul Jones, Nagiza F. Samatova
2017	—	`conf`	Leveraging External Knowledge for Phrase-Based Topic Modeling. TAAI Mingyang Xu, Ruixin Yang, Stephen Ranshous, Shijie Li, Nagiza F. Samatova
2017	—	`conf`	Mining Aspect-Specific Opinions from Online Reviews Using a Latent Embedding Structured Topic Model. CICLing (2) Mingyang Xu, Ruixin Yang, Paul Jones, Nagiza F. Samatova
2017	B	`conf`	Mining Persistent and Discriminative Communities in Graph Ensembles. SSDBM Steve Harenberg, Mandar S. Chaudhary, Nagiza F. Samatova
2017	—	`conf`	Real time utility-based recommendation for revenue optimization via an adaptive online Top-K high utility itemsets mining model. ICNC-FSKD Ruixin Yang, Mingyang Xu, Paul Jones, Nagiza F. Samatova
2017	J	`jnl`	The Application of the Weighted J. Comput. Biol. Wenbin Chen, William Hendrix, Nagiza F. Samatova
2017	J	`jnl`	Theory-Guided Data Science: A New Paradigm for Scientific Discovery from Data. IEEE Trans. Knowl. Data Eng. Anuj Karpatne, Gowtham Atluri, James H. Faghmous, Michael S. Steinbach, Arindam Banerjee, Auroop R. Ganguly, Shashi Shekhar, Nagiza F. Samatova, Vipin Kumar
2017	—	`conf`	Towards Automatic Linkage of Knowledge Worker's Claims with Associated Evidence from Screenshots. BigDataService Paul Jones, Dakota Medd, Sreekanth Ramakrishnan, Rajat Shah, Joann Keyton, Nagiza F. Samatova
2016	A	`conf`	A Scalable Approach for Outlier Detection in Edge Streams Using Sketch-based Approximations. SDM Stephen Ranshous, Steve Harenberg, Kshitij Sharma, Nagiza F. Samatova
2016	B	`conf`	AMRZone: A Runtime AMR Data Sharing Framework for Scientific Applications. CCGrid Wenzhao Zhang, Houjun Tang, Steve Harenberg, Surendra Byna, Xiaocheng Zou, Dharshi Devendran, Daniel F. Martin, Kesheng Wu, Bin Dong, Scott Klasky, Nagiza F. Samatova
2016	C	`conf`	Causality-Guided Feature Selection. ADMA Mandar S. Chaudhary, Doel L. Gonzalez II, Gonzalo A. Bello, Michael P. Angus, Dhara Desai, Steve Harenberg, P. Murali Doraiswamy, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova
2016	C	`conf`	Community Detection in Dynamic Attributed Graphs. ADMA Gonzalo A. Bello, Steve Harenberg, Abhishek Agrawal, Nagiza F. Samatova
2016	—	`conf`	Exploring memory hierarchy and network topology for runtime AMR data sharing across scientific applications. IEEE BigData Wenzhao Zhang, Houjun Tang, Stephen Ranshous, Surendra Byna, Daniel F. Martin, Kesheng Wu, Bin Dong, Scott Klasky, Nagiza F. Samatova
2016	B	`conf`	In Situ Storage Layout Optimization for AMR Spatio-temporal Read Accesses. ICPP Houjun Tang, Suren Byna, Steve Harenberg, Wenzhao Zhang, Xiaocheng Zou, Daniel F. Martin, Bin Dong, Dharshi Devendran, Kesheng Wu, David Trebotich, Scott Klasky, Nagiza F. Samatova
2016	C	`conf`	Knowledge-Guided Maximal Clique Enumeration. ADMA Steve Harenberg, Ramona G. Seay, Gonzalo A. Bello, Rada Chirkova, P. Murali Doraiswamy, Nagiza F. Samatova
2016	J	`jnl`	On size-constrained minimum s-t cut problems and size-constrained dense subgraph problems. Theor. Comput. Sci. Wenbin Chen, Nagiza F. Samatova, Matthias F. Stallmann, William Hendrix, Weiqin Ying
2016	A	`conf`	Online Prediction of User Actions through an Ensemble Vote from Vector Representation and Frequency Analysis Models. SDM Changsung Moon, Dakota Medd, Paul Jones, Steve Harenberg, William Oxbury, Nagiza F. Samatova
2016	J	`jnl`	Theory-guided Data Science: A New Paradigm for Scientific Discovery. CoRR Anuj Karpatne, Gowtham Atluri, James H. Faghmous, Michael S. Steinbach, Arindam Banerjee, Auroop R. Ganguly, Shashi Shekhar, Nagiza F. Samatova, Vipin Kumar
2016	B	`conf`	Usage Pattern-Driven Dynamic Data Layout Reorganization. CCGrid Houjun Tang, Surendra Byna, Steve Harenberg, Xiaocheng Zou, Wenzhao Zhang, Kesheng Wu, Bin Dong, Oliver Rübel, Kristofer E. Bouchard, Scott Klasky, Nagiza F. Samatova
2015	J	`jnl`	An efficient algorithm for pairwise local alignment of protein interaction networks. J. Bioinform. Comput. Biol. Wenbin Chen, Matthew C. Schmidt, Wenhong Tian, Nagiza F. Samatova, Shaohong Zhang
2015	C	`conf`	Exploring Memory Hierarchy to Improve Scientific Data Read Performance. CLUSTER Wenzhao Zhang, Houjun Tang, Xiaocheng Zou, Steve Harenberg, Qing Liu, Scott Klasky, Nagiza F. Samatova
2015	B	`conf`	Parallel In Situ Detection of Connected Components in Adaptive Mesh Refinement Data. CCGRID Xiaocheng Zou, Kesheng Wu, David A. Boyuka II, Daniel F. Martin, Surendra Byna, Houjun Tang, Kushal Bansal, Terry J. Ligocki, Hans Johansen, Nagiza F. Samatova
2015	—	`conf`	Response-Guided Community Detection: Application to Climate Index Discovery. ECML/PKDD (2) Gonzalo A. Bello, Michael P. Angus, Navya Pedemane, Jitendra K. Harlalka, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova
2015	B	`conf`	The hyperdyadic index and generalized indexing and query with PIQUE. SSDBM David A. Boyuka II, Houjun Tang, Kushal Bansal, Xiaocheng Zou, Scott Klasky, Nagiza F. Samatova
2014	J	`jnl`	DIRAQ: scalable in situ data- and resource-aware indexing for optimized query performance. Clust. Comput. Sriram Lakshminarasimhan, Xiaocheng Zou, David A. Boyuka II, Saurabh V. Pendse, John Jenkins, Venkatram Vishwanath, Michael E. Papka, Scott Klasky, Nagiza F. Samatova
2014	—	`conf`	Fast Set Intersection through Run-Time Bitmap Construction over PForDelta-Compressed Indexes. Euro-Par Xiaocheng Zou, Sriram Lakshminarasimhan, David A. Boyuka II, Stephen Ranshous, Houjun Tang, Scott Klasky, Nagiza F. Samatova
2014	J	`jnl`	Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks. Concurr. Comput. Pract. Exp. Qing Liu, Jeremy Logan, Yuan Tian, Hasan Abbasi, Norbert Podhorszki, Jong Youl Choi, Scott Klasky, Roselyne Tchoua, Jay F. Lofstead, Ron A. Oldfield, Manish Parashar, Nagiza F. Samatova, Karsten Schwan, Arie Shoshani, Matthew Wolf, Kesheng Wu, Weikuan Yu
2014	—	`conf`	Improving Read Performance with Online Access Pattern Analysis and Prefetching. Euro-Par Houjun Tang, Xiaocheng Zou, John Jenkins, David A. Boyuka II, Stephen Ranshous, Dries Kimpe, Scott Klasky, Nagiza F. Samatova
2014	A	`conf`	Memory-efficient Query-driven Community Detection with Application to Complex Disease Associations. SDM Steve Harenberg, Ramona G. Seay, Stephen Ranshous, Kanchana Padmanabhan, Jitendra K. Harlalka, Eric R. Schendel, Michael P. O'Brien, Rada Chirkova, William Hendrix, Alok N. Choudhary, Vipin Kumar, Murali Doraiswamy, Nagiza F. Samatova
2014	J	`jnl`	Processing MPI Derived Datatypes on Noncontiguous GPU-Resident Data. IEEE Trans. Parallel Distributed Syst. John Jenkins, James Dinan, Pavan Balaji, Tom Peterka, Nagiza F. Samatova, Rajeev Thakur
2014	C	`conf`	RADAR: Runtime Asymmetric Data-Access Driven Scientific Data Replication. ISC John Jenkins, Xiaocheng Zou, Houjun Tang, Dries Kimpe, Robert B. Ross, Nagiza F. Samatova
2014	J	`jnl`	Solving the maximum duo-preservation string mapping problem with linear programming. Theor. Comput. Sci. Wenbin Chen, Zhengzhang Chen, Nagiza F. Samatova, Lingxi Peng, Jianxiong Wang, Maobin Tang
2014	J	`jnl`	Theory-Guided Data Science for Climate Change. Computer James H. Faghmous, Arindam Banerjee, Shashi Shekhar, Michael S. Steinbach, Vipin Kumar, Auroop R. Ganguly, Nagiza F. Samatova
2014	B	`conf`	Transparent in Situ Data Transformations in ADIOS. CCGRID David A. Boyuka II, Sriram Lakshminarasimhan, Xiaocheng Zou, Zhenhuan Gong, John Jenkins, Eric R. Schendel, Norbert Podhorszki, Qing Liu, Scott Klasky, Nagiza F. Samatova
2013	—	`conf`	A Generic High-Performance Method for Deinterleaving Scientific Data. Euro-Par Eric R. Schendel, Steve Harenberg, Houjun Tang, Venkatram Vishwanath, Michael E. Papka, Nagiza F. Samatova
2013	J	`jnl`	A graph-based approach to find teleconnections in climate data. Stat. Anal. Data Min. Jaya Kawale, Stefan Liess, Arjun Kumar, Michael S. Steinbach, Peter K. Snyder, Vipin Kumar, Auroop R. Ganguly, Nagiza F. Samatova, Fredrick H. M. Semazzi
2013	J	`jnl`	ALACRITY: Analytics-Driven Lossless Data Compression for Rapid In-Situ Indexing, Storing, and Querying. Trans. Large Scale Data Knowl. Centered Syst. John Jenkins, Isha Arkatkar, Sriram Lakshminarasimhan, David A. Boyuka II, Eric R. Schendel, Neil Shah, Stéphane Ethier, Choong-Seock Chang, Jackie Chen, Hemanth Kolla, Scott Klasky, Robert B. Ross, Nagiza F. Samatova
2013	A	`conf`	Automatic Detection and Correction of Multi-class Classification Errors Using System Whole-part Relationships. SDM Zhengzhang Chen, Alok N. Choudhary, John Jenkins, Vipin Kumar, Anatoli V. Melechko, Jinfeng Rao, Nagiza F. Samatova, Fredrick H. M. Semazzi
2013	A*	`conf`	Coupled Heterogeneous Association Rule Mining (CHARM): Application Toward Inference of Modulatory Climate Relationships. ICDM Doel L. Gonzalez, Saurabh V. Pendse, Kanchana Padmanabhan, Michael P. Angus, Isaac K. Tetteh, Shashank Srinivas, Andrea Villanes, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova
2013	J	`jnl`	Discovery of extreme events-related communities in contrasting groups of physical system networks. Data Min. Knowl. Discov. Zhengzhang Chen, William Hendrix, Hang Guan, Isaac K. Tetteh, Alok N. Choudhary, Fredrick H. M. Semazzi, Nagiza F. Samatova
2013	A*	`conf`	Forecast Oriented Classification of Spatio-Temporal Extreme Events. IJCAI Zhengzhang Chen, Yusheng Xie, Yu Cheng, Kunpeng Zhang, Ankit Agrawal, Wei-keng Liao, Nagiza F. Samatova, Alok N. Choudhary
2013	J	`jnl`	ISABELA for effective in situ compression of scientific data. Concurr. Comput. Pract. Exp. Sriram Lakshminarasimhan, Neil Shah, Stéphane Ethier, Seung-Hoe Ku, Choong-Seock Chang, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova
2013	B	`conf`	PARLO: PArallel Run-Time Layout Optimization for Scientific Data Explorations with Heterogeneous Access Patterns. CCGRID Zhenhuan Gong, David A. Boyuka II, Xiaocheng Zou, Qing Liu, Norbert Podhorszki, Scott Klasky, Xiaosong Ma, Nagiza F. Samatova
2013	A	`conf`	Scalable in situ scientific data encoding for analytical query processing. HPDC Sriram Lakshminarasimhan, David A. Boyuka II, Saurabh V. Pendse, Xiaocheng Zou, John Jenkins, Venkatram Vishwanath, Michael E. Papka, Nagiza F. Samatova
2012	—	`conf`	Analytics-Driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying. DEXA (2) John Jenkins, Isha Arkatkar, Sriram Lakshminarasimhan, Neil Shah, Eric R. Schendel, Stéphane Ethier, Choong-Seock Chang, Jacqueline H. Chen, Hemanth Kolla, Scott Klasky, Robert B. Ross, Nagiza F. Samatova
2012	A	`conf`	Byte-precision level of detail processing for variable precision analytics. SC John Jenkins, Eric R. Schendel, Sriram Lakshminarasimhan, David A. Boyuka II, Terry Rogers, Stéphane Ethier, Robert B. Ross, Scott Klasky, Nagiza F. Samatova
2012	J	`jnl`	Community-based anomaly detection in evolutionary networks. J. Intell. Inf. Syst. Zhengzhang Chen, William Hendrix, Nagiza F. Samatova
2012	C	`conf`	Enabling Fast, Noncontiguous GPU Data Movement in Hybrid MPI+GPU Environments. CLUSTER John Jenkins, James Dinan, Pavan Balaji, Nagiza F. Samatova, Rajeev Thakur
2012	—	`conf`	Hierarchical Classifier-Regression Ensemble for Multi-phase Non-linear Dynamic System Response Prediction: Application to Climate Analysis. ICDM Workshops Doel L. Gonzalez, Zhengzhang Chen, Isaac K. Tetteh, Tatdow Pansombut, Fredrick H. M. Semazzi, Vipin Kumar, Anatoli V. Melechko, Nagiza F. Samatova
2012	A*	`conf`	ISOBAR Preconditioner for Effective and High-throughput Lossless Data Compression. ICDE Eric R. Schendel, Ye Jin, Neil Shah, Jackie Chen, Choong-Seock Chang, Seung-Hoe Ku, Stéphane Ethier, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova
2012	A	`conf`	ISOBAR hybrid compression-I/O interleaving for large-scale parallel I/O optimization. HPDC Eric R. Schendel, Saurabh V. Pendse, John Jenkins, David A. Boyuka II, Zhenhuan Gong, Sriram Lakshminarasimhan, Qing Liu, Hemanth Kolla, Jackie Chen, Scott Klasky, Robert B. Ross, Nagiza F. Samatova
2012	C	`conf`	Improving I/O Throughput with PRIMACY: Preconditioning ID-Mapper for Compressing Incompressibility. CLUSTER Neil Shah, Eric R. Schendel, Sriram Lakshminarasimhan, Saurabh V. Pendse, Terry Rogers, Nagiza F. Samatova
2012	B	`conf`	MLOC: Multi-level Layout Optimization Framework for Compressed Scientific Data Exploration with Heterogeneous Access Patterns. ICPP Zhenhuan Gong, Terry Rogers, John Jenkins, Hemanth Kolla, Stéphane Ethier, Jackie Chen, Robert B. Ross, Scott Klasky, Nagiza F. Samatova
2012	A	`conf`	Multi-level Layout Optimization for Efficient Spatio-temporal Queries on ISABELA-compressed Data. IPDPS Zhenhuan Gong, Sriram Lakshminarasimhan, John Jenkins, Hemanth Kolla, Stéphane Ethier, Jackie Chen, Robert B. Ross, Scott Klasky, Nagiza F. Samatova
2012	J	`jnl`	NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems. PLoS Comput. Biol. Matthew C. Schmidt, Andrea M. Rocha, Kanchana Padmanabhan, Yekaterina Shpanskaya, Jillian F. Banfield, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova
2012	—	`conf`	On the path to sustainable, scalable, and energy-efficient data analytics: Challenges, promises, and future directions. IGCC Sriram Lakshminarasimhan, Prabhat Kumar, Wei-keng Liao, Alok N. Choudhary, Vipin Kumar, Nagiza F. Samatova
2012	J	`jnl`	Spice: discovery of phenotype-determining component interplays. BMC Syst. Biol. Zhengzhang Chen, Kanchana Padmanabhan, Andrea M. Rocha, Yekaterina Shpanskaya, James R. Mihelcic, Kathleen Scott, Nagiza F. Samatova
2012	A	`conf`	Toward Data-driven, Semi-automatic Inference of Phenomenological Physical Models: Application to Eastern Sahel Rainfall. SDM Saurabh V. Pendse, Isaac K. Tetteh, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova
2011	A*	`conf`	Biclustering-Driven Ensemble of Bayesian Belief Network Classifiers for Underdetermined Problems. IJCAI Tatdow Pansombut, William Hendrix, Zekai Jacob Gao, Brent E. Harrison, Nagiza F. Samatova
2011	A*	`conf`	Classification of Emerging Extreme Event Tracks in Multivariate Spatio-Temporal Physical Systems Using Dynamic Network Structures: Application to Hurricane Track Prediction. IJCAI Huseyin Sencan, Zhengzhang Chen, William Hendrix, Tatdow Pansombut, Fredrick H. M. Semazzi, Alok N. Choudhary, Vipin Kumar, Anatoli V. Melechko, Nagiza F. Samatova
2011	—	`conf`	Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-temporal Data. Euro-Par (1) Sriram Lakshminarasimhan, Neil Shah, Stéphane Ethier, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova
2011	J	`jnl`	Coordinating Computation and I/O in Massively Parallel Sequence Search. IEEE Trans. Parallel Distributed Syst. Heshan Lin, Xiaosong Ma, Wu-chun Feng, Nagiza F. Samatova
2011	J	`jnl`	DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules. BMC Syst. Biol. William Hendrix, Andrea M. Rocha, Kanchana Padmanabhan, Alok N. Choudhary, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova
2011	—	`conf`	Data Guided Discovery of Dynamic Climate Dipoles. CIDU Jaya Kawale, Stefan Liess, Arjun Kumar, Michael S. Steinbach, Auroop R. Ganguly, Nagiza F. Samatova, Fredrick H. M. Semazzi, Peter K. Snyder, Vipin Kumar
2011	—	`conf`	Detecting Pathway Cross-Talks by Analyzing Conserved Functional Modules across Multiple Phenotype-Expressing Organisms. BIBM Kevin A. Wilson, Andrea M. Rocha, Kanchana Padmanabhan, Kuangyu Wang, Zhengzhang Chen, Ye Jin, James R. Mihelcic, Nagiza F. Samatova
2011	J	`jnl`	Efficient alpha, beta-motif Finder for Identification of Phenotype-related Functional Modules. BMC Bioinform. Matthew C. Schmidt, Andrea M. Rocha, Kanchana Padmanabhan, Zhengzhang Chen, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova
2011	A	`conf`	ISABELA-QA: query-driven analytics with ISABELA-compressed extreme-scale scientific data. SC Sriram Lakshminarasimhan, John Jenkins, Isha Arkatkar, Zhenhuan Gong, Hemanth Kolla, Seung-Hoe Ku, Stéphane Ethier, Jackie Chen, Choong-Seock Chang, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova
2011	—	`conf`	Lessons Learned from Exploring the Backtracking Paradigm on the GPU. Euro-Par (2) John Jenkins, Isha Arkatkar, John D. Owens, Alok N. Choudhary, Nagiza F. Samatova
2011	J	`jnl`	On the parameterized complexity of the Multi-MCT and Multi-MCST problems. J. Comb. Optim. Wenbin Chen, Matthew C. Schmidt, Nagiza F. Samatova
2011	A*	`conf`	S-preconditioner for Multi-fold Data Reduction with Guaranteed User-Controlled Accuracy. ICDM Ye Jin, Sriram Lakshminarasimhan, Neil Shah, Zhenhuan Gong, Choong-Seock Chang, Jackie Chen, Stéphane Ethier, Hemanth Kolla, Seung-Hoe Ku, Scott Klasky, Robert Latham, Robert B. Ross, Karen Schuchardt, Nagiza F. Samatova
2011	—	`conf`	Sensitive and Specific Identification of Protein Complexes in "Perturbed" Protein Interaction Networks from Noisy Pull-Down Data. IPDPS Workshops William Hendrix, Tatiana V. Karpinets, Byung-Hoon Park, Eric R. Schendel, Alok N. Choudhary, Nagiza F. Samatova
2011	J	`jnl`	Transparent runtime parallelization of the R scripting language. J. Parallel Distributed Comput. Jiangtian Li, Xiaosong Ma, Srikanth B. Yoginath, Guruprasad Kora, Nagiza F. Samatova
2010	J	`jnl`	A high-throughput BMC Bioinform. Chongle Pan, Byung-Hoon Park, William H. McDonald, Patricia A. Carey, Jillian F. Banfield, Nathan Verberkmoes, Robert L. Hettich, Nagiza F. Samatova
2010	—	`conf`	Detecting and Tracking Community Dynamics in Evolutionary Networks. ICDM Workshops Zhengzhang Chen, Kevin A. Wilson, Ye Jin, William Hendrix, Nagiza F. Samatova
2010	—	`conf`	Discovery of Enriched Biological Motifs Using Knowledge Priors with Application to Biohydrogen Production. BIOCOMP William Hendrix, Andrea M. Rocha, Mark T. Elmore, Joe Trien, Nagiza F. Samatova
2010	Misc	`conf`	Improving the Performance of Bayesian Belief Network Classifiers via Decision Tree Based Feature Selection. IKE Tatdow Pansombut, Brent E. Harrison, Dennis R. Bahler, Nagiza F. Samatova
2010	—	`conf`	Multiple Alignment of Large Interaction Networks by Fast Identifying Maximal Conserved Patterns. BIOCOMP Wenhong Tian, Matthew C. Schmidt, Wenbin Chen, Nagiza F. Samatova
2010	—	`conf`	PackPlay: Mining Semantic Data in Collaborative Games. Linguistic Annotation Workshop Nathan David Green, Paul Breimyer, Vinay Kumar, Nagiza F. Samatova
2010	—	`conf`	The Multiple Alignment Algorithm for Metabolic Pathways without Abstraction. ICDM Workshops Wenbin Chen, Andrea M. Rocha, William Hendrix, Matthew C. Schmidt, Nagiza F. Samatova
2010	J	`jnl`	Theoretical underpinnings for maximal clique enumeration on perturbed graphs. Theor. Comput. Sci. William Hendrix, Matthew C. Schmidt, Paul Breimyer, Nagiza F. Samatova
2009	—	`conf`	A Fast, Accurate Algorithm for Identifying Functional Modules Through Pairwise Local Alignment of Protein Interaction Networks. BIOCOMP Wenbin Chen, Matthew C. Schmidt, Wenhong Tian, Nagiza F. Samatova
2009	J	`jnl`	A scalable, parallel algorithm for maximal clique enumeration. J. Parallel Distributed Comput. Matthew C. Schmidt, Nagiza F. Samatova, Kevin Thomas, Byung-Hoon Park
2009	—	`conf`	An Algorithm for the Discovery of Phenotype Related Metabolic Pathways. BIBM Matthew C. Schmidt, Nagiza F. Samatova
2009	J	`jnl`	BioDEAL: community generation of biological annotations. BMC Medical Informatics Decis. Mak. Paul Breimyer, Nathan David Green, Vinay Kumar, Nagiza F. Samatova
2009	—	`conf`	Fast Matching for All Pairs Similarity Search. Web Intelligence Amit C. Awekar, Nagiza F. Samatova
2009	Misc	`conf`	Incremental All Pairs Similarity Search for Varying Similarity Thresholds with Reduced I/O Overhead. IKE Amit C. Awekar, Nagiza F. Samatova, Paul Breimyer
2009	—	`conf`	Incremental all pairs similarity search for varying similarity thresholds. SNAKDD Amit C. Awekar, Nagiza F. Samatova, Paul Breimyer
2009	J	`jnl`	On parameterized complexity of the Multi-MCS problem. Theor. Comput. Sci. Wenbin Chen, Matthew C. Schmidt, Nagiza F. Samatova
2009	—	`conf`	On perturbation theory and an algorithm for maximal clique enumeration in uncertain and noisy graphs. KDD Workshop on Knowledge Discovery from Uncertain Data William Hendrix, Matthew C. Schmidt, Paul Breimyer, Nagiza F. Samatova
2009	—	`conf`	PR: Automatic parallelization of data-parallel statistical computing codes for R in hybrid multi-node and multi-core environments. IADIS AC (2) Paul Breimyer, Guruprasad Kora, William Hendrix, Neil Shah, Nagiza F. Samatova
2009	Misc	`conf`	Pairwise Alignment of Interaction Networks by Fast Identification of Maximal Conserved Patterns. Pacific Symposium on Biocomputing Wenhong Tian, Nagiza F. Samatova
2009	—	`ch.`	Scientific Data Analysis. Scientific Data Management Chandrika Kamath, Nikil Wale, George Karypis, Gaurav Pandey, Vipin Kumar, Krishna Rajan, Nagiza F. Samatova, Paul Breimyer, Guruprasad Kora, Chongle Pan, Srikanth B. Yoginath
2009	Misc	`conf`	Systematic Evaluation of Convergence Criteria in Iterative Training for NLP. FLAIRS Patricia Brent, Nathan David Green, Paul Breimyer, Ramya Krishnamurthy, Nagiza F. Samatova
2009	Misc	`conf`	Web-Enabled R for Large-Scale Collaborative Data Mining: A Survey. IKE Paul Breimyer, Guruprasad Kora, Nagiza F. Samatova
2009	—	`conf`	WebBANC: Building Semantically-Rich Annotated Corpora from Web User Annotations of Minority Languages. NODALIDA Nathan David Green, Paul Breimyer, Vinay Kumar, Nagiza F. Samatova
2009	Misc	`conf`	pR: Lightweight, Easy-to-Use Middleware to Plugin Parallel Analytical Computing with R. IKE Paul Breimyer, William Hendrix, Guruprasad Kora, Nagiza F. Samatova
2008	B	`conf`	Adaptive Request Scheduling for Parallel Scientific Web Services. SSDBM Heshan Lin, Xiaosong Ma, Jiangtian Li, Ting Yu, Nagiza F. Samatova
2008	J	`jnl`	From pull-down data to protein interaction networks and complexes with biological relevance. Bioinform. Bing Zhang, Byung-Hoon Park, Tatiana V. Karpinets, Nagiza F. Samatova
2008	A	`conf`	Parallel, scalable, memory-efficient backtracking for combinatoria modeling of large-scale biological systems. IPDPS Byung-Hoon Park, Matthew C. Schmidt, Kevin Thomas, Tatiana V. Karpinets, Nagiza F. Samatova
2008	C	`conf`	Rapid and robust ranking of text documents in a dynamically changing corpus. AICCSA Byung-Hoon Park, Nagiza F. Samatova, Rajesh Munavalli, Ramya Krishnamurthy, Houssain Kettani, Al Geist
2007	J	`jnl`	A Multi-Level Cache Model for Run-Time Optimization of Remote Visualization. IEEE Trans. Vis. Comput. Graph. Robert Sisneros, Chad Jones, Jian Huang, Jinzhu Gao, Byung-Hoon Park, Nagiza F. Samatova
2007	A	`conf`	Automatic Parallelization of Scripting Languages: Toward Transparent Desktop Parallel Computing. IPDPS Xiaosong Ma, Jiangtian Li, Nagiza F. Samatova
2007	—	`conf`	Multi-stage Framework to Infer Protein Functional Modules from Mass Spectrometry Pull-Down Data with Assessment of Biological Relevance. BIBM Byung-Hoon Park, Bing Zhang, Tatiana V. Karpinets, Nagiza F. Samatova
2007	J	`jnl`	Sampling streaming data with replacement. Comput. Stat. Data Anal. Byung-Hoon Park, George Ostrouchov, Nagiza F. Samatova
2007	Misc	`conf`	The Buffered Work-Pool Approach for Search-Tree Based Optimization Algorithms. PPAM Faisal N. Abu-Khzam, Mohamad A. Rizk, Deema A. Abdallah, Nagiza F. Samatova
2007	C	`conf`	The Maximum Common Subgraph Problem: Faster Solutions via Vertex Cover. AICCSA Faisal N. Abu-Khzam, Nagiza F. Samatova, Mohamad A. Rizk, Michael A. Langston
2006	B	`conf`	Multi-Criterion Active Learning in Conditional Random Fields. ICTAI Christopher T. Symons, Nagiza F. Samatova, Ramya Krishnamurthy, Byung-Hoon Park, Tarik Umar, David Buttler, Terence Critchlow, David Hysom
2006	J	`jnl`	The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior. Comput. Biol. Chem. James M. McCollum, Gregory D. Peterson, Chris D. Cox, Michael L. Simpson, Nagiza F. Samatova
2005	Misc	`conf`	A New Approach and Faster Exact Methods for the Maximum Common Subgraph Problem. COCOON W. Henry Suters, Faisal N. Abu-Khzam, Yun Zhang, Christopher T. Symons, Nagiza F. Samatova, Michael A. Langston
2005	—	`conf`	Accelerating Exact Stochastic Simulation Using Reconfigurable Computing. ERSA Brandon Thurmon, James M. McCollum, Gregory D. Peterson, Chris D. Cox, Nagiza F. Samatova, Gary S. Sayler, Michael L. Simpson
2005	A	`conf`	Efficient Data Access for Parallel BLAST. IPDPS Heshan Lin, Xiaosong Ma, Praveen Chandramohan, Al Geist, Nagiza F. Samatova
2005	A	`conf`	Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology. SC Yun Zhang, Faisal N. Abu-Khzam, Nicole E. Baldwin, Elissa J. Chesler, Michael A. Langston, Nagiza F. Samatova
2005	J	`jnl`	On FastMap and the Convex Hull of Multivariate Data: Toward Fast and Robust Dimension Reduction. IEEE Trans. Pattern Anal. Mach. Intell. George Ostrouchov, Nagiza F. Samatova
2005	—	`conf`	RScaLAPACK: High-Performance Parallel Statistical Computing with R and ScaLAPACK. PDCS Srikanth B. Yoginath, Nagiza F. Samatova, David Bauer, Guruprasad Kora, George Fann, Al Geist
2004	—	`conf`	In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate Specificity. CSB Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Al Geist, Nagiza F. Samatova
2004	A	`conf`	Reservoir-Based Random Sampling with Replacement from Data Stream. SDM Byung-Hoon Park, George Ostrouchov, Nagiza F. Samatova, Al Geist
2003	—	`conf`	An SVM-based Algorithm for Identification of Photosynthesis-specific Genome Features. CSB Gong-Xin Yu, George Ostrouchov, Al Geist, Nagiza F. Samatova
2003	A*	`conf`	Inference of Protein-Protein Interactions by Unlikely Profile Pair. ICDM Byung-Hoon Park, George Ostrouchov, Gong-Xin Yu, Al Geist, Andrey Gorin, Nagiza F. Samatova
2003	A	`conf`	Interoperability of Visualization Software and Data Models is NOT an Achievable Goal. IEEE Visualization E. Wes Bethel, Greg Abram, John Shalf, Randy Frank, James P. Ahrens, Steven G. Parker, Nagiza F. Samatova, Mark C. Miller
2002	—	`conf`	An Ontology-Based HTML to XML Conversion Using Intelligent Agents. HICSS Thomas E. Potok, Mark T. Elmore, Joel W. Reed, Nagiza F. Samatova
2002	—	`conf`	Distributed Dimension Reduction Algorithms for Widely Dispersed Data. IASTED PDCS Faisal N. Abu-Khzam, Nagiza F. Samatova, George Ostrouchov, Michael A. Langston, Al Geist
2002	A	`conf`	Parallel Out-of-Core Algorithm for Genome-Scale Enumeration of Metabolic Systemic Pathways. IPDPS Nagiza F. Samatova, Al Geist, George Ostrouchov, Anatoli V. Melechko
2002	J	`jnl`	RACHET: An Efficient Cover-Based Merging of Clustering Hierarchies from Distributed Datasets. Distributed Parallel Databases Nagiza F. Samatova, George Ostrouchov, Al Geist, Anatoli V. Melechko
2000	—	`conf`	Agent-based Architecture for Flexible Lean Cell Design, Analysis and Evaluation. DIISM Thomas E. Potok, Nenad Ivezic, Nagiza F. Samatova