Naftali Kaminski

19 papers A 1B 1Misc 1Journal 16
YearRankTypeTitle / Venue / Authors
2024 J jnl
Predicting lung aging using scRNA-Seq data.
PLoS Comput. Biol.
Qi Song, Alex Singh, John E. McDonough, Taylor Sterling Adams, Robin Vos, Ruben De Man, Greg Myers, Laurens J. Ceulemans, Bart M. Vanaudenaerde, Wim A. Wuyts, Xiting Yan, Jonas Schupp, James S. Hagood, Naftali Kaminski, Ziv Bar-Joseph
2023 J jnl
A novel Bayesian framework for harmonizing information across tissues and studies to increase cell type deconvolution accuracy.
Briefings Bioinform.
Wenxuan Deng, Bolun Li, Jiawei Wang, Wei Jiang, Xiting Yan, Ningshan Li, Milica Vukmirovic, Naftali Kaminski, Jing Wang, Hongyu Zhao
2023 J jnl
Comprehensive visualization of cell-cell interactions in single-cell and spatial transcriptomics with NICHES.
Bioinform.
Micha Sam Brickman Raredon, Junchen Yang, Neeharika Kothapalli, Wesley Lewis, Naftali Kaminski, Laura E. Niklason, Yuval Kluger
2023 J jnl
Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.
BMC Bioinform.
Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan
2023 J jnl
iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.
BMC Bioinform.
Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan
2022 J jnl
CINS: Cell Interaction Network inference from Single cell expression data.
PLoS Comput. Biol.
Ye Yuan, Carlos Cosme, Taylor Sterling Adams, Jonas Schupp, Koji Sakamoto, Nikos Xylourgidis, Matthew Ruffalo, Jiachen Li, Naftali Kaminski, Ziv Bar-Joseph
2021 J jnl
A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data.
BMC Bioinform.
Hongyu Li, Biqing Zhu, Zhichao Xu, Taylor Adams, Naftali Kaminski, Hongyu Zhao
2018 J jnl
iDREM: Interactive visualization of dynamic regulatory networks.
PLoS Comput. Biol.
Jun Ding, James S. Hagood, Namasivayam Ambalavanan, Naftali Kaminski, Ziv Bar-Joseph
2015 Misc conf
T-ReCS: Stable Selection of Dynamically Formed Groups of Features with Application to Prediction of Clinical Outcomes.
Pacific Symposium on Biocomputing
Grace T. Huang, Ioannis Tsamardinos, Vineet K. Raghu, Naftali Kaminski, Panayiotis V. Benos
2014 J jnl
Bidirectional elastic image registration using B-spline affine transformation.
Comput. Medical Imaging Graph.
Suicheng Gu, Xin Meng, Frank C. Sciurba, Hongxia Ma, Joseph K. Leader, Naftali Kaminski, David Gur, Jiantao Pu
2014 J jnl
Missing value imputation in high-dimensional phenomic data: imputable or not, and how?
BMC Bioinform.
Serena G. Liao, Yan Lin, Dongwan D. Kang, Divay Chandra, Jessica Bon, Naftali Kaminski, Frank C. Sciurba, George C. Tseng
2012 J jnl
An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection.
Bioinform.
Xingbin Wang, Dongwan D. Kang, Kui Shen, Chi Song, Shuya Lu, Lun-Ching Chang, Serena G. Liao, Zhiguang Huo, Shaowu Tang, Ying Ding, Naftali Kaminski, Etienne Sibille, Yan Lin, Jia Li, George C. Tseng
2012 J jnl
Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density.
PLoS Comput. Biol.
Claudia Coronnello, Ryan J. Hartmaier, Arshi Arora, Luai Huleihel, Kusum V. Pandit, Abha S. Bais, Michael Butterworth, Naftali Kaminski, Gary D. Stormo, Steffi Oesterreich, Panayiotis V. Benos
2010 J jnl
Module-based prediction approach for robust inter-study predictions in microarray data.
Bioinform.
Zhibao Mi, Kui Shen, Nan Song, Chunrong Cheng, Chi Song, Naftali Kaminski, George C. Tseng
2008 A conf
Alignment and classification of time series gene expression in clinical studies.
ISMB
Tien-ho Lin, Naftali Kaminski, Ziv Bar-Joseph
2007 J jnl
A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies.
J. Comput. Biol.
Naftali Kaminski, Ziv Bar-Joseph
2006 B conf
A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies.
RECOMB
Naftali Kaminski, Ziv Bar-Joseph
2005 J jnl
Comparison of normalization methods for CodeLink Bioarray data.
BMC Bioinform.
Wei Wu, Nilesh Dave, George C. Tseng, Thomas Richards, Eric P. Xing, Naftali Kaminski
2004 J jnl
Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays.
Bioinform.
Yoseph Barash, Elinor Dehan, Meir Krupsky, Wilbur Franklin, Marc Geraci, Nir Friedman, Naftali Kaminski