Nae-Chyun Chen

11 papers C 2Journal 3Unranked 6
YearRankTypeTitle / Venue / Authors
2023 J jnl
Improving variant calling using population data and deep learning.
BMC Bioinform.
Nae-Chyun Chen, Alexey Kolesnikov, Sidharth Goel, Taedong Yun, Pi-Chuan Chang, Andrew Carroll
2021 J jnl
A Memory-Efficient FM-Index Constructor for Next-Generation Sequencing Applications on FPGAs.
CoRR
Nae-Chyun Chen, Yu-Cheng Li, Yi-Chang Lu
2021 J jnl
LevioSAM: fast lift-over of variant-aware reference alignments.
Bioinform.
Taher Mun, Nae-Chyun Chen, Ben Langmead
2018 C conf
A Hybrid Flow for Multiple Sequence Alignment with a BLASTn Based Pairwise Alignment Processor.
ISCAS
Mao-Jan Lin, Chih-Yu Chang, Yu-Cheng Li, Nae-Chyun Chen, Yi-Chang Lu
2018 C conf
A Memory-Efficient FM-Index Constructor for Next-Generation Sequencing Applications on FPGAs.
ISCAS
Nae-Chyun Chen, Yu-Cheng Li, Yi-Chang Lu
2018 — conf
Adaptively Banded Smith-Waterman Algorithm for Long Reads and Its Hardware Accelerator.
ASAP
Yi-Lun Liao, Yu-Cheng Li, Nae-Chyun Chen, Yi-Chang Lu
2016 — conf
A special processor design for Nucleotide Basic Local Alignment Search Tool with a new Banded two-hit method.
NORCAS
Chih-Yu Chang, Yu-Cheng Li, Nae-Chyun Chen, Xiao-Xuan Huang, Yi-Chang Lu
2016 — conf
An FPGA-based quality filter for de novo sequence assembly pipeline.
APCCAS
Chun-Shen Liu, Nae-Chyun Chen, Yu-Cheng Li, Yi-Chang Lu
2016 — conf
Queue-based segmentation algorithm for refining depth maps in light field camera applications.
GCCE
Yi-Hsiang Chen, Nae-Chyun Chen, Yu-Hsiang Kao, Yu-Cheng Li, Yi-Chang Lu
2016 — conf
Step shift: A fast image segmentation algorithm and its hardware implementation for next-generation sequencing fluorescence data.
APCCAS
Xiao-Xuan Huang, Chun-Hsien Ho, Yu-Cheng Li, Nae-Chyun Chen, Yi-Chang Lu
2015 — conf
Power efficient special processor design for burrows-wheeler-transform-based short read sequence alignment.
BioCAS
Nae-Chyun Chen, Tai-Yin Chiu, Yu-Cheng Li, Yu-Chun Chien, Yi-Chang Lu
2025 Best paper conf
Assessing the Effectiveness of the Tigress Obfuscator Against MOPSA and BinaryNinja.
CheckMATE
Nicolò Altamura, Enrico Bragastini, Marco Campion, Mila Dalla Preda
2026 Best paper preprint
ASSEMBLAGE-DEEPHISTORY: A Cross-Build Binary Dataset with Temporal Coverage.
arXiv
Chang Liu, Noah Fleischmann, Nicolò Altamura, Edward Raff, James Holt, Kristopher Micinski