Nadia El-Mabrouk

81 papers B 10C 12Misc 2Journal 40Unranked 12
YearRankTypeTitle / Venue / Authors
2026 J jnl
FullSynesth: Syntenic Reconciliation of a Set of Consistent Gene Trees.
Theory Comput. Syst.
Mathieu Gascon, Mattéo Delabre, Nadia El-Mabrouk
2024 C conf
Simultaneously Building and Reconciling a Synteny Tree.
SPIRE
Mathieu Gascon, Mattéo Delabre, Nadia El-Mabrouk
2024 J jnl
Synesth: Comprehensive Syntenic Reconciliation with Unsampled Lineages.
Algorithms
Mattéo Delabre, Nadia El-Mabrouk
2023 J jnl
On the complexity of non-binary tree reconciliation with endosymbiotic gene transfer.
Algorithms Mol. Biol.
Mathieu Gascon, Nadia El-Mabrouk
2022 J jnl
MUL-tree pruning for consistency and optimal reconciliation - complexity and algorithms.
Theor. Comput. Sci.
Mathieu Gascon, Riccardo Dondi, Nadia El-Mabrouk
2022 C conf
Non-Binary Tree Reconciliation with Endosymbiotic Gene Transfer.
WABI
Mathieu Gascon, Nadia El-Mabrouk
2022 — conf
Reconciliation with Segmental Duplication, Transfer, Loss and Gain.
RECOMB-CG
Yoann Anselmetti, Mattéo Delabre, Nadia El-Mabrouk
2021 C conf
Complexity and Algorithms for MUL-Tree Pruning.
IWOCA
Mathieu Gascon, Riccardo Dondi, Nadia El-Mabrouk
2021 J jnl
Gene tree and species tree reconciliation with endosymbiotic gene transfer.
Bioinform.
Yoann Anselmetti, Nadia El-Mabrouk, Manuel Lafond, Aïda Ouangraoua
2021 J jnl
Predicting the Evolution of Syntenies - An Algorithmic Review.
Algorithms
Nadia El-Mabrouk
2020 J jnl
A generalized Robinson-Foulds distance for labeled trees.
BMC Genom.
Samuel Briand, Christophe Dessimoz, Nadia El-Mabrouk, Manuel Lafond, Gabriela Lobinska
2020 J jnl
Evolution through segmental duplications and losses: a Super-Reconciliation approach.
Algorithms Mol. Biol.
Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos
2020 J jnl
ISMB 2020 proceedings.
Bioinform.
Nadia El-Mabrouk, Donna K. Slonim
2019 J jnl
ISMB/ECCB 2019 Proceedings.
Bioinform.
Yana Bromberg, Nadia El-Mabrouk, Predrag Radivojac
2019 J jnl
The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics.
Theor. Comput. Sci.
Manuel Lafond, Nadia El-Mabrouk, Katharina T. Huber, Vincent Moulton
2018 J jnl
GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution.
BMC Genom.
Emmanuel Noutahi, Nadia El-Mabrouk
2018 J jnl
Gene Tree Construction and Correction Using SuperTree and Reconciliation.
IEEE ACM Trans. Comput. Biol. Bioinform.
Manuel Lafond, Cédric Chauve, Nadia El-Mabrouk, Aïda Ouangraoua
2018 Misc conf
Partial Homology Relations - Satisfiability in Terms of Di-Cographs.
COCOON
Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth
2018 — conf
Reconstructing the History of Syntenies Through Super-Reconciliation.
RECOMB-CG
Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos
2018 J jnl
The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics.
CoRR
Manuel Lafond, Nadia El-Mabrouk, Katharina T. Huber, Vincent Moulton
2017 C conf
A General Framework for Gene Tree Correction Based on Duplication-Loss Reconciliation.
WABI
Nadia El-Mabrouk, Aïda Ouangraoua
2017 J jnl
Approximating the correction of weighted and unweighted orthology and paralogy relations.
Algorithms Mol. Biol.
Riccardo Dondi, Manuel Lafond, Nadia El-Mabrouk
2017 J jnl
CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes.
Bioinform.
Emmanuel Noutahi, Virginie Calderon, Mathieu Blanchette, B. Franz Lang, Nadia El-Mabrouk
2017 J jnl
Partial Orthology, Paralogy and Xenology Relations - Satisfiability in terms of Di-Cographs.
CoRR
Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth
2016 C conf
Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results.
WABI
Riccardo Dondi, Nadia El-Mabrouk, Manuel Lafond
2016 B conf
Efficient Non-Binary Gene Tree Resolution with Weighted Reconciliation Cost.
CPM
Manuel Lafond, Emmanuel Noutahi, Nadia El-Mabrouk
2016 J jnl
Gene Tree Construction and Correction using SuperTree and Reconciliation.
CoRR
Manuel Lafond, Cédric Chauve, Nadia El-Mabrouk, Aïda Ouangraoua
2016 J jnl
The link between orthology relations and gene trees: a correction perspective.
Algorithms Mol. Biol.
Manuel Lafond, Riccardo Dondi, Nadia El-Mabrouk
2015 C conf
Orthology Relation and Gene Tree Correction: Complexity Results.
WABI
Manuel Lafond, Nadia El-Mabrouk
2015 J jnl
Reconstructing a SuperGeneTree minimizing reconciliation.
BMC Bioinform.
Manuel Lafond, Aïda Ouangraoua, Nadia El-Mabrouk
2014 J jnl
Gene tree correction for reconciliation and species tree inference: Complexity and algorithms.
J. Discrete Algorithms
Riccardo Dondi, Nadia El-Mabrouk, Krister M. Swenson
2014 J jnl
Polytomy refinement for the correction of dubious duplications in gene trees.
Bioinform.
Manuel Lafond, Cédric Chauve, Riccardo Dondi, Nadia El-Mabrouk
2013 C conf
Aligning and Labeling Genomes under the Duplication-Loss Model.
CiE
Riccardo Dondi, Nadia El-Mabrouk
2013 J jnl
Ancestral Genome Organization: An Alignment Approach.
J. Comput. Biol.
Patrick Holloway, Krister M. Swenson, David H. Ardell, Nadia El-Mabrouk
2013 — ch.
Duplication, Rearrangement and Reconciliation: A Follow-Up 13 Years Later.
Models and Algorithms for Genome Evolution
Cédric Chauve, Nadia El-Mabrouk, Laurent Guéguen, Magali Semeria, Eric Tannier
2013 C conf
Duplication-Loss Genome Alignment: Complexity and Algorithm.
LATA
Billel Benzaid, Riccardo Dondi, Nadia El-Mabrouk
2013 — ch.
Error Detection and Correction of Gene Trees.
Models and Algorithms for Genome Evolution
Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk
2013 J jnl
Gene tree correction guided by orthology.
BMC Bioinform.
Manuel Lafond, Magali Semeria, Krister M. Swenson, Eric Tannier, Nadia El-Mabrouk
2013 — book
Models and Algorithms for Genome Evolution
Cédric Chauve, Nadia El-Mabrouk, Eric Tannier
2012 J jnl
A flexible ancestral genome reconstruction method based on gapped adjacencies.
BMC Bioinform.
Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk
2012 C conf
An Optimal Reconciliation Algorithm for Gene Trees with Polytomies.
WABI
Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk
2012 B conf
Evolution of Genome Organization by Duplication and Loss: An Alignment Approach.
RECOMB
Patrick Holloway, Krister M. Swenson, David H. Ardell, Nadia El-Mabrouk
2012 J jnl
Gene tree correction for reconciliation and species tree inference.
Algorithms Mol. Biol.
Krister M. Swenson, Andrea Doroftei, Nadia El-Mabrouk
2012 J jnl
Gene trees and species trees: irreconcilable differences.
BMC Bioinform.
Krister M. Swenson, Nadia El-Mabrouk
2012 B conf
Minimum Leaf Removal for Reconciliation: Complexity and Algorithms.
CPM
Riccardo Dondi, Nadia El-Mabrouk
2012 J jnl
On the Complexity of Minimum Labeling Alignment of Two Genomes
CoRR
Riccardo Dondi, Nadia El-Mabrouk
2011 J jnl
Evolution of orthologous tandemly arrayed gene clusters.
BMC Bioinform.
Olivier Tremblay-Savard, Denis Bertrand, Nadia El-Mabrouk
2011 J jnl
Genome Halving and Double Distance with Losses.
J. Comput. Biol.
Olivier Tremblay-Savard, Yves Gagnon, Denis Bertrand, Nadia El-Mabrouk
2011 C conf
Removing Noise from Gene Trees.
WABI
Andrea Doroftei, Nadia El-Mabrouk
2010 — conf
Advances on Genome Duplication Distances.
RECOMB-CG
Yves Gagnon, Olivier Tremblay-Savard, Denis Bertrand, Nadia El-Mabrouk
2010 C conf
Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss.
WABI
Denis Bertrand, Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk
2009 J jnl
Genetic Map Refinement Using a Comparative Genomic Approach.
J. Comput. Biol.
Denis Bertrand, Mathieu Blanchette, Nadia El-Mabrouk
2009 B conf
New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees.
RECOMB
Cédric Chauve, Nadia El-Mabrouk
2008 — conf
A Phylogenetic Approach to Genetic Map Refinement.
RECOMB-CG
Denis Bertrand, Mathieu Blanchette, Nadia El-Mabrouk
2008 J jnl
Gene Family Evolution by Duplication, Speciation, and Loss.
J. Comput. Biol.
Cédric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk
2008 J jnl
Inferring Ancestral Gene Orders for a Family of Tandemly Arrayed Genes.
J. Comput. Biol.
Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk
2007 J jnl
Duplication and Inversion History of a Tandemly Repeated Genes Family.
J. Comput. Biol.
Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, Olivier Gascuel
2007 — conf
Evolution of Tandemly Arrayed Genes in Multiple Species.
RECOMB-CG
Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk
2007 J jnl
Gene Maps Linearization Using Genomic Rearrangement Distances.
J. Comput. Biol.
Guillaume Blin, Eric Blais, Danny Hermelin, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk
2007 — ch.
Genome rearrangement with gene families.
Mathematics of Evolution and Phylogeny
Nadia El-Mabrouk
2007 — conf
Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract).
RECOMB-CG
Cédric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk
2007 Misc conf
Seed-Based Exclusion Method for Non-coding RNA Gene Search.
COCOON
Jean-Eudes Duchesne, Mathieu Giraud, Nadia El-Mabrouk
2006 — ed.
Comparative Genomics, RECOMB 2006 International Workshop, RCG 2006, Montreal, Canada, September 24-26, 2006, Proceedings
Comparative Genomics
Guillaume Bourque, Nadia El-Mabrouk
2006 — conf
Evolution of Tandemly Repeated Sequences Through Duplication and Inversion.
Comparative Genomics
Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, Olivier Gascuel
2006 — conf
Inferring Gene Orders from Gene Maps Using the Breakpoint Distance.
Comparative Genomics
Guillaume Blin, Eric Blais, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk
2005 J jnl
Approximate Matching of Structured Motifs in Dna Sequences.
J. Bioinform. Comput. Biol.
Nadia El-Mabrouk, Mathieu Raffinot, Jean-Eudes Duchesne, Mathieu Lajoie, Nicolas Luc
2005 — conf
Maximizing Synteny Blocks to Identify Ancestral Homologs.
Comparative Genomics
Guillaume Bourque, Yasmine Yacef, Nadia El-Mabrouk
2005 — conf
Recovering haplotype structure through recombination and gene conversion.
ECCB/JBI
Mathieu Lajoie, Nadia El-Mabrouk
2004 J jnl
Deriving Haplotypes through Recombination and Gene Conversion Pathways.
J. Bioinform. Comput. Biol.
Nadia El-Mabrouk
2004 J jnl
Haplotypes histories as pathways of recombinations.
Bioinform.
Nadia El-Mabrouk, Damian Labuda
2004 — conf
The Distribution of Inversion Lengths in Bacteria.
Comparative Genomics
David Sankoff, Jean-François Lefebvre, Elisabeth R. M. Tillier, Adrian Maler, Nadia El-Mabrouk
2003 — conf
Detection and validation of single gene inversions.
ISMB (Supplement of Bioinformatics)
Jean-François Lefebvre, Nadia El-Mabrouk, Elisabeth R. M. Tillier, David Sankoff
2003 J jnl
The Reconstruction of Doubled Genomes.
SIAM J. Comput.
Nadia El-Mabrouk, David Sankoff
2002 B conf
Approximate matching of secondary structures.
RECOMB
Nadia El-Mabrouk, Mathieu Raffinot
2002 C conf
Exploring the Set of All Minimal Sequences of Reversals - An Application to Test the Replication-Directed Reversal Hypothesis.
WABI
Yasmine Ajana, Jean-François Lefebvre, Elisabeth R. M. Tillier, Nadia El-Mabrouk
2002 J jnl
Reconstructing an ancestral genome using minimum segments duplications and reversals.
J. Comput. Syst. Sci.
Nadia El-Mabrouk
2000 B conf
Genome Rearrangement by Reversals and Insertions/Deletions of Contiguous Segments.
CPM
Nadia El-Mabrouk
1999 B conf
Hybridization and Genome Rearrangement.
CPM
Nadia El-Mabrouk, David Sankoff
1999 B conf
Reconstructing the pre-doubling genome.
RECOMB
Nadia El-Mabrouk, David Bryant, David Sankoff
1998 B conf
Genome Halving.
CPM
Nadia El-Mabrouk, Joseph H. Nadeau, David Sankoff
1996 B conf
Boyer-Moore Strategy to Efficient Approximate String Matching.
CPM
Nadia El-Mabrouk, Maxime Crochemore