Mário Ramirez

11 papers Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
A modular and scalable web platform for computational phylogenetics.
CoRR
Nyckollas Brandão, André Jesus, André Páscoa, Alexandre P. Francisco, Mário Ramirez, Cátia Vaz
2021 J jnl
Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas.
Nucleic Acids Res.
Rafael Mamede, Pedro Vila-Cerqueira, Mickael Silva, João A. Carriço, Mário Ramirez
2019 J jnl
Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data.
Nucleic Acids Res.
Tiago F. Jesus, Bruno Ribeiro-Gonçalves, Diogo N. Silva, Valeria Bortolaia, Mário Ramirez, João A. Carriço
2017 J jnl
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods.
Bioinform.
Marta Nascimento, Adriano Sousa, Mário Ramirez, Alexandre P. Francisco, João A. Carriço, Cátia Vaz
2016 J jnl
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees.
Nucleic Acids Res.
Bruno Ribeiro-Gonçalves, Alexandre P. Francisco, Cátia Vaz, Mário Ramirez, João André Carriço
2015 J jnl
Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images.
Bioinform.
Luís Pedro Coelho, Catarina Pato, Ana Friães, Ariane Neumann, Maren von Köckritz-Blickwede, Mário Ramirez, João André Carriço
2014 J jnl
TypOn: the microbial typing ontology.
J. Biomed. Semant.
Cátia Vaz, Alexandre P. Francisco, Mickael Silva, Keith A. Jolley, James E. Bray, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço
2012 J jnl
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.
BMC Bioinform.
Alexandre P. Francisco, Cátia Vaz, Pedro T. Monteiro, José Melo-Cristino, Mário Ramirez, João A. Carriço
2010 — conf
An Ontology and a REST API for Sequence Based Microbial Typing Data.
JBI
João Almeida, João Tiple, Mário Ramirez, José Melo-Cristino, Cátia Vaz, Alexandre P. Francisco, João A. Carriço
2009 J jnl
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach.
BMC Bioinform.
Alexandre P. Francisco, Miguel M. F. Bugalho, Mário Ramirez, João A. Carriço
2007 J jnl
Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement.
BMC Bioinform.
Francisco R. Pinto, João A. Carriço, Mário Ramirez, Jonas S. Almeida