Murray Patterson

135 papers A* 2A 1B 7C 4Misc 1Journal 78Unranked 38
YearRankTypeTitle / Venue / Authors
2026 J jnl
CHIMERA-Bench: A Benchmark Dataset for Epitope-Specific Antibody Design.
CoRR
Mansoor Ahmed, Nadeem Taj, Imdad Ullah Khan, Hemanth Venkateswara, Murray Patterson
2026 — ed.
Computational Advances in Bio and Medical Sciences - 13th International Conference, ICCABS 2025, Atlanta, GA, USA, January 12-14, 2025, Revised Selected Papers
ICCABS
Mohammed Alser, Mukul S. Bansal, Yury Khudyakov, Serghei Mangul, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Shibu Yooseph, Alexander Zelikovsky
2026 J jnl
Nearest Neighbor CCP-Based Molecular Sequence Analysis.
IEEE Trans. Comput. Biol. Bioinform.
Sarwan Ali, Prakash Chourasia, Bipin Koirala, Murray Patterson
2025 A* conf
A Data-Free Analytical Quantization Scheme for Deep Learning Models.
ICDM
Ahmed Luqman, Khuzemah Qazi, Murray Patterson, Malik Jahan Khan, Imdadullah Khan
2025 J jnl
Boosting t-SNE Efficiency for Sequencing Data: Insights from Kernel Selection.
CoRR
Avais Jan, Prakash Chourasia, Sarwan Ali, Murray Patterson
2025 J jnl
Breaking the Euclidean Barrier: Hyperboloid-Based Biological Sequence Analysis.
CoRR
Sarwan Ali, Haris Mansoor, Murray Patterson
2025 J jnl
Cancer progression inference using a finite-state model to allow recurrences and losses of mutations.
Neural Comput. Appl.
Simone Ciccolella, Murray Patterson, Iman Hajirasouliha, Gianluca Della Vedova
2025 — ed.
Computational Advances in Bio and Medical Sciences - 12th International Conference, ICCABS 2023, Norman, OK, USA, December 11-13, 2023, Revised Selected Papers
ICCABS
Mukul S. Bansal, Wei Chen, Yury Khudyakov, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Sharma V. Thankachan, Alexander Zelikovsky
2025 — conf
Computing Gram Matrix for SMILES Strings Using RDKFingerprint and Sinkhorn-Knopp Algorithm.
ICCABS
Sarwan Ali, Haris Mansoor, Prakash Chourasia, Imdad Ullah Khan, Murray Patterson
2025 — conf
EfficientNet in Digital Twin-Based Cardiac Arrest Prediction and Analysis.
ICCABS
Qasim Zia, Avais Jan, Zafar Iqbal, Muhammad Mumtaz Ali, Mukarram Ali, Murray Patterson
2025 J jnl
EfficientNet in Digital Twin-based Cardiac Arrest Prediction and Analysis.
CoRR
Qasim Zia, Avais Jan, Zafar Iqbal, Muhammad Mumtaz Ali, Mukarram Ali, Murray Patterson
2025 — conf
Enhancing Privacy Preservation and Reducing Analysis Time with Federated Transfer Learning in Digital Twins-Based Computed Tomography Scan Analysis.
ICCABS
Avais Jan, Qasim Zia, Murray Patterson
2025 J jnl
Enhancing Privacy Preservation and Reducing Analysis Time with Federated Transfer Learning in Digital Twins-based Computed Tomography Scan Analysis.
CoRR
Avais Jan, Qasim Zia, Murray Patterson
2025 J jnl
Hash-binding: DNA-protein binding prediction using hashing-based embedding.
Neural Comput. Appl.
Sarwan Ali, Tamkanat E. Ali, Murray Patterson
2025 — conf
Hilbert Curve Based Molecular Sequence Analysis.
PAKDD (2)
Sarwan Ali, Tamkanat E. Ali, Imdad Ullah Khan, Murray Patterson
2025 J jnl
Hist2Vec: A histogram and kernel-based embedding method for molecular sequence analysis.
Expert Syst. Appl.
Sarwan Ali, Tamkanat E. Ali, Haris Mansoor, Prakash Chourasia, Murray Patterson
2025 — conf
Improved Graph-Based Antibody-Aware Epitope Prediction with Protein Language Model-Based Embeddings.
ICCABS
Mansoor Ahmed, Sarwan Ali, Avais Jan, Imdad Ullah Khan, Murray Patterson
2025 — conf
Neuromorphic Spiking Neural Network Based Classification of COVID-19 Spike Sequences.
ICCABS
Taslim Murad, Prakash Chourasia, Sarwan Ali, Avais Jan, Murray Patterson
2025 J jnl
Neuromorphic Spiking Neural Network Based Classification of COVID-19 Spike Sequences.
CoRR
Taslim Murad, Prakash Chourasia, Sarwan Ali, Imdad Ullah Khan, Murray Patterson
2025 — conf
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification Tasks.
RECOMB-CG
Sarwan Ali, Taslim Murad, Prakash Chourasia, Haris Mansoor, Imdad Ullah Khan, Pin-Yu Chen, Murray Patterson
2025 J jnl
Sequence Analysis Using the Bezier Curve.
CoRR
Taslim Murad, Sarwan Ali, Murray Patterson
2025 J jnl
Uncovering Hierarchical Structure in LLM Embeddings with δ-Hyperbolicity, Ultrametricity, and Neighbor Joining.
CoRR
Prakash Chourasia, Sarwan Ali, Murray Patterson
2024 J jnl
A Universal Non-Parametric Approach For Improved Molecular Sequence Analysis.
CoRR
Sarwan Ali, Tamkanat E. Ali, Prakash Chourasia, Murray Patterson
2024 — conf
A Universal Non-parametric Approach for Improved Molecular Sequence Analysis.
PKDD (4)
Sarwan Ali, Tamkanat E. Ali, Prakash Chourasia, Murray Patterson
2024 — conf
An Interactive Lambda Calculus Interpreter and Visualization Tool.
COMPUTE
Bhashithe Abeysinghe, Murray Patterson, Rajshekhar Sunderraman
2024 J jnl
An alignment problem.
CoRR
Emma Louise McDaniel, Armin R. Mikler, Chetan Tiwari, Murray Patterson
2024 J jnl
Computing Gram Matrix for SMILES Strings using RDKFingerprint and Sinkhorn-Knopp Algorithm.
CoRR
Sarwan Ali, Haris Mansoor, Prakash Chourasia, Imdad Ullah Khan, Murray Patterson
2024 J jnl
Converting Time Series Data to Numeric Representations Using Alphabetic Mapping and k-mer strategy.
CoRR
Sarwan Ali, Tamkanat E. Ali, Imdad Ullah Khan, Murray Patterson
2024 J jnl
DANCE: Deep Learning-Assisted Analysis of Protein Sequences Using Chaos Enhanced Kaleidoscopic Images.
CoRR
Taslim Murad, Prakash Chourasia, Sarwan Ali, Murray Patterson
2024 J jnl
DWFL: Enhancing Federated Learning through Dynamic Weighted Averaging.
CoRR
Prakash Chourasia, Tamkanat E. Ali, Sarwan Ali, Murray Patterson
2024 J jnl
EPIC: Enhancing Privacy through Iterative Collaboration.
CoRR
Prakash Chourasia, Heramb Lonkar, Sarwan Ali, Murray Patterson
2024 J jnl
Elliptic geometry-based kernel matrix for improved biological sequence classification.
Knowl. Based Syst.
Sarwan Ali, Madiha Shabbir, Haris Mansoor, Prakash Chourasia, Murray Patterson
2024 J jnl
Expanding Chemical Representation with k-mers and Fragment-based Fingerprints for Molecular Fingerprinting.
CoRR
Sarwan Ali, Prakash Chourasia, Murray Patterson
2024 J jnl
From PDB files to protein features: a comparative analysis of PDB bind and STCRDAB datasets.
Medical Biol. Eng. Comput.
Sarwan Ali, Prakash Chourasia, Murray Patterson
2024 — conf
Gaussian Beltrami-Klein Model for Protein Sequence Classification: A Hyperbolic Approach.
ISBRA (1)
Sarwan Ali, Haris Mansoor, Prakash Chourasia, Yasir Ali, Murray Patterson
2024 J jnl
Hilbert Curve Based Molecular Sequence Analysis.
CoRR
Sarwan Ali, Tamkanat E. Ali, Imdad Ullah Khan, Murray Patterson
2024 — conf
MIK: Modified Isolation Kernel for Biological Sequence Visualization, Classification, and Clustering.
ML4H@NeurIPS
Sarwan Ali, Prakash Chourasia, Haris Mansoor, Bipin Koirala, Murray Patterson
2024 J jnl
MIK: Modified Isolation Kernel for Biological Sequence Visualization, Classification, and Clustering.
CoRR
Sarwan Ali, Prakash Chourasia, Haris Mansoor, Bipin Koirala, Murray Patterson
2024 J jnl
Molecular sequence classification using efficient kernel based embedding.
Inf. Sci.
Sarwan Ali, Tamkanat E. Ali, Taslim Murad, Haris Mansoor, Murray Patterson
2024 J jnl
Nearest Neighbor CCP-Based Molecular Sequence Analysis.
CoRR
Sarwan Ali, Prakash Chourasia, Bipin Koirala, Murray Patterson
2024 J jnl
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification Tasks.
CoRR
Sarwan Ali, Taslim Murad, Prakash Chourasia, Haris Mansoor, Imdad Ullah Khan, Pin-Yu Chen, Murray Patterson
2024 J jnl
PseAAC2Vec protein encoding for TCR protein sequence classification.
Comput. Biol. Medicine
Zahra Tayebi, Sarwan Ali, Taslim Murad, Imdadullah Khan, Murray Patterson
2024 J jnl
TCellR2Vec: efficient feature selection for TCR sequences for cancer classification.
PeerJ Comput. Sci.
Zahra Tayebi, Sarwan Ali, Murray Patterson
2024 — conf
Weighted Chaos Game Representation for Molecular Sequence Classification.
PKDD (4)
Taslim Murad, Sarwan Ali, Murray Patterson
2023 — conf
A New Direction in Membranolytic Anticancer Peptides classification: Combining Spaced k-mers with Chaos Game Representation.
INNS DLIA@IJCNN
Taslim Murad, Sarwan Ali, Murray Patterson
2023 J jnl
Anderson Acceleration For Bioinformatics-Based Machine Learning.
CoRR
Sarwan Ali, Prakash Chourasia, Murray Patterson
2023 — conf
Anderson Acceleration for Bioinformatics-Based Machine Learning.
KDH@IJCAI
Sarwan Ali, Prakash Chourasia, Murray Patterson
2023 J jnl
BioSequence2Vec: Efficient Embedding Generation For Biological Sequences.
CoRR
Sarwan Ali, Usama Sardar, Murray Patterson, Imdad Ullah Khan
2023 — conf
BioSequence2Vec: Efficient Embedding Generation for Biological Sequences.
PAKDD (2)
Sarwan Ali, Usama Sardar, Murray Patterson, Imdad Ullah Khan
2023 — ed.
Bioinformatics Research and Applications - 19th International Symposium, ISBRA 2023, Wrocław, Poland, October 9-12, 2023, Proceedings
ISBRA
Xuan Guo, Serghei Mangul, Murray Patterson, Alexander Zelikovsky
2023 J jnl
Characterizing SARS-CoV-2 Spike Sequences Based on Geographical Location.
J. Comput. Biol.
Sarwan Ali, Babatunde Bello, Zahra Tayebi, Murray Patterson
2023 B conf
Circular Arc Length-Based Kernel Matrix For Protein Sequence Classification.
IEEE Big Data
Taslim Murad, Sarwan Ali, Prakash Chourasia, Haris Mansoor, Murray Patterson
2023 — conf
Counterfactually Guided Policy Transfer in Clinical Settings.
CHIL
Sarwan Ali, Babatunde Bello, Prakash Chourasia, Ria Thazhe Punathil, Pin-Yu Chen, Imdadullah Khan, Murray Patterson
2023 J jnl
Efficient Approximate Kernel Based Spike Sequence Classification.
IEEE ACM Trans. Comput. Biol. Bioinform.
Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdad Ullah Khan, Murray Patterson
2023 J jnl
Efficient Classification of SARS-CoV-2 Spike Sequences Using Federated Learning.
CoRR
Prakash Chourasia, Taslim Murad, Zahra Tayebi, Sarwan Ali, Imdad Ullah Khan, Murray Patterson
2023 — conf
Efficient Sequence Embedding for SARS-CoV-2 Variants Classification.
ISBRA
Sarwan Ali, Usama Sardar, Imdad Ullah Khan, Murray Patterson
2023 B conf
Empowering Pandemic Response with Federated Learning for Protein Sequence Data Analysis.
IJCNN
Prakash Chourasia, Zahra Tayebi, Sarwan Ali, Murray Patterson
2023 — conf
Enhancing t-SNE Performance for Biological Sequencing Data Through Kernel Selection.
ISBRA
Prakash Chourasia, Taslim Murad, Sarwan Ali, Murray Patterson
2023 J jnl
Exploring The Potential Of GANs In Biological Sequence Analysis.
CoRR
Taslim Murad, Sarwan Ali, Murray Patterson
2023 — conf
Hist2Vec: Kernel-Based Embeddings for Biological Sequence Classification.
ISBRA
Sarwan Ali, Haris Mansoor, Prakash Chourasia, Murray Patterson
2023 B conf
PCD2Vec: A Poisson Correction Distance Based Approach for Viral Host Classification.
IJCNN
Sarwan Ali, Taslim Murad, Murray Patterson
2023 J jnl
PCD2Vec: A Poisson Correction Distance-Based Approach for Viral Host Classification.
CoRR
Sarwan Ali, Taslim Murad, Murray Patterson
2023 — conf
PDB2Vec: Using 3D Structural Information for Improved Protein Analysis.
ISBRA
Sarwan Ali, Prakash Chourasia, Murray Patterson
2023 — conf
Plastic: An Easy to Use and Modular Tool for Benchmarking Tumor Phylogeny Reconstruction Pipelines.
ICCABS
Akshay Juyal, Zahra Tayebi, Alexander Zelikovsky, Mauricio Soto Gomez, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson
2023 J jnl
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data.
J. Comput. Biol.
Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson
2023 — conf
Robust Brain Age Estimation via Regression Models and MRI-Derived Features.
ICCCI (CCIS Volume)
Mansoor Ahmed, Usama Sardar, Sarwan Ali, Shafiq Alam, Murray Patterson, Imdad Ullah Khan
2023 J jnl
Robust Brain Age Estimation via Regression Models and MRI-derived Features.
CoRR
Mansoor Ahmed, Usama Sardar, Sarwan Ali, Shafiq Alam, Murray Patterson, Imdad Ullah Khan
2023 — conf
Sequence-Based Nanobody-Antigen Binding Prediction.
ISBRA
Usama Sardar, Sarwan Ali, Muhammad Sohaib Ayub, Muhammad Shoaib, Khurram Bashir, Imdad Ullah Khan, Murray Patterson
2023 J jnl
Sequence-Based Nanobody-Antigen Binding Prediction.
CoRR
Usama Sardar, Sarwan Ali, Muhammad Sohaib Ayub, Muhammad Shoaib, Khurram Bashir, Imdad Ullah Khan, Murray Patterson
2023 — conf
Simulating Tumor Evolution from scDNA-Seq as an Accumulation of both SNVs and CNAs.
ISBRA
Zahra Tayebi, Akshay Juyal, Alexander Zelikovsky, Murray Patterson
2023 J jnl
Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021).
J. Comput. Biol.
Mukul S. Bansal, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2023 J jnl
Spike2CGR: an efficient method for spike sequence classification using chaos game representation.
Mach. Learn.
Taslim Murad, Sarwan Ali, Imdadullah Khan, Murray Patterson
2023 — conf
T Cell Receptor Protein Sequences and Sparse Coding: A Novel Approach to Cancer Classification.
ICONIP (10)
Zahra Tayebi, Sarwan Ali, Prakash Chourasia, Taslim Murad, Murray Patterson
2023 J jnl
T Cell Receptor Protein Sequences and Sparse Coding: A Novel Approach to Cancer Classification.
CoRR
Zahra Tayebi, Sarwan Ali, Prakash Chourasia, Taslim Murad, Murray Patterson
2023 — conf
Unveiling the Robustness of Machine Learning Models in Classifying COVID-19 Spike Sequences.
ISBRA
Sarwan Ali, Pin-Yu Chen, Murray Patterson
2023 J jnl
ViralVectors: Compact and Scalable Alignment-free Virome Feature Generation.
CoRR
Sarwan Ali, Prakash Chourasia, Zahra Tayebi, Babatunde Bello, Murray Patterson
2023 J jnl
ViralVectors: compact and scalable alignment-free virome feature generation.
Medical Biol. Eng. Comput.
Sarwan Ali, Prakash Chourasia, Zahra Tayebi, Babatunde Bello, Murray Patterson
2023 J jnl
Virus2Vec: Viral Sequence Classification Using Machine Learning.
CoRR
Sarwan Ali, Babatunde Bello, Prakash Chourasia, Ria Thazhe Punathil, Pin-Yu Chen, Imdad Ullah Khan, Murray Patterson
2023 — conf
When Biology has Chemistry: Solubility And Drug Subcategory Prediction using SMILES Strings.
Tiny Papers @ ICLR
Sarwan Ali, Prakash Chourasia, Murray Patterson
2022 J jnl
Benchmarking Machine Learning Robustness in Covid-19 Genome Sequence Classification.
CoRR
Sarwan Ali, Bikram Sahoo, Alexander Zelikovskiy, Pin-Yu Chen, Murray Patterson
2022 — ed.
Computational Advances in Bio and Medical Sciences: 11th International Conference, ICCABS 2021, Virtual Event, December 16-18, 2021, Revised Selected Papers
ICCABS
Mukul S. Bansal, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2022 J jnl
Determining Significant Correlation Between Pairs of Extant Characters in a Small Parsimony Framework.
J. Comput. Biol.
Kaustubh Khandai, Cristian Navarro-Martinez, Brendan Smith, Rebecca Buonopane, S. Ashley Byun, Murray Patterson
2022 J jnl
Efficient Approximate Kernel Based Spike Sequence Classification.
CoRR
Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdad Ullah Khan, Murray Patterson
2022 J jnl
Efficient analysis of COVID-19 clinical data using machine learning models.
Medical Biol. Eng. Comput.
Sarwan Ali, Yijing Zhou, Murray Patterson
2022 C conf
Hashing2Vec: Fast Embedding Generation for SARS-CoV-2 Spike Sequence Classification.
ACML
Taslim Murad, Prakash Chourasia, Sarwan Ali, Murray Patterson
2022 B conf
Informative Initialization and Kernel Selection Improves t-SNE for Biological Sequences.
IEEE Big Data
Prakash Chourasia, Sarwan Ali, Murray Patterson
2022 J jnl
Informative Initialization and Kernel Selection Improves t-SNE for Biological Sequences.
CoRR
Prakash Chourasia, Sarwan Ali, Murray Patterson
2022 — conf
PSSM2Vec: A Compact Alignment-Free Embedding Approach for Coronavirus Spike Sequence Classification.
ICONIP (7)
Sarwan Ali, Taslim Murad, Murray Patterson
2022 J jnl
PWM2Vec: An Efficient Embedding Approach for Viral Host Specification from Coronavirus Spike Sequences.
CoRR
Sarwan Ali, Babatunde Bello, Prakash Chourasia, Ria Thazhe Punathil, Yijing Zhou, Murray Patterson
2022 J jnl
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data.
CoRR
Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson
2022 — conf
Spike2Signal: Classifying Coronavirus Spike Sequences with Deep Learning.
BigDataService
Sarwan Ali, Taslim Murad, Prakash Chourasia, Murray Patterson
2021 — conf
A k-mer Based Approach for SARS-CoV-2 Variant Identification.
ISBRA
Sarwan Ali, Bikram Sahoo, Naimat Ullah, Alexander Zelikovskiy, Murray Patterson, Imdadullah Khan
2021 J jnl
A k-mer Based Approach for SARS-CoV-2 Variant Identification.
CoRR
Sarwan Ali, Bikram Sahoo, Naimat Ullah, Alexander Zelikovskiy, Murray Patterson, Imdadullah Khan
2021 J jnl
Classifying COVID-19 Spike Sequences from Geographic Location Using Deep Learning.
CoRR
Sarwan Ali, Babatunde Bello, Murray Patterson
2021 — conf
Clustering SARS-CoV-2 Variants from Raw High-Throughput Sequencing Reads Data.
ICCABS
Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson
2021 — conf
Correlated Evolution in the Small Parsimony Framework.
ISBRA
Brendan Smith, Cristian Navarro-Martinez, Rebecca Buonopane, S. Ashley Byun, Murray Patterson
2021 J jnl
Effective Clustering for Single Cell Sequencing Cancer Data.
IEEE J. Biomed. Health Informatics
Simone Ciccolella, Murray Patterson, Paola Bonizzoni, Gianluca Della Vedova
2021 J jnl
Effective and scalable clustering of SARS-CoV-2 sequences.
CoRR
Sarwan Ali, Tamkanat E. Ali, Muhammad Asad Khan, Imdadullah Khan, Murray Patterson
2021 J jnl
Efficient Analysis of COVID-19 Clinical Data using Machine Learning Models.
CoRR
Sarwan Ali, Yijing Zhou, Murray Patterson
2021 J jnl
From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering.
J. Comput. Biol.
Andrew Melnyk, Fatemeh Mohebbi, Sergey Knyazev, Bikram Sahoo, Roya Hosseini, Pavel Skums, Alex Zelikovsky, Murray Patterson
2021 J jnl
Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses.
Bioinform.
Simone Ciccolella, Camir Ricketts, Mauricio Soto Gomez, Murray Patterson, Dana Silverbush, Paola Bonizzoni, Iman Hajirasouliha, Gianluca Della Vedova
2021 J jnl
Robust Representation and Efficient Feature Selection Allows for Effective Clustering of SARS-CoV-2 Variants.
Algorithms
Zahra Tayebi, Sarwan Ali, Murray Patterson
2021 J jnl
Robust Representation and Efficient Feature Selection Allows for Effective Clustering of SARS-CoV-2 Variants.
CoRR
Zahra Tayebi, Sarwan Ali, Murray Patterson
2021 J jnl
Simpler and Faster Development of Tumor Phylogeny Pipelines.
J. Comput. Biol.
Sarwan Ali, Simone Ciccolella, Lorenzo Lucarella, Gianluca Della Vedova, Murray Patterson
2021 — conf
Spike2Vec: An Efficient and Scalable Embedding Approach for COVID-19 Spike Sequences.
IEEE BigData
Sarwan Ali, Murray Patterson
2021 J jnl
Spike2Vec: An Efficient and Scalable Embedding Approach for COVID-19 Spike Sequences.
CoRR
Sarwan Ali, Murray Patterson
2020 — conf
Clustering Based Identification of SARS-CoV-2 Subtypes.
ICCABS
Andrew Melnyk, Fatemeh Mohebbi, Sergey Knyazev, Bikram Sahoo, Roya Hosseini, Pavel Skums, Alex Zelikovsky, Murray Patterson
2019 B conf
A Rearrangement Distance for Fully-Labelled Trees.
CPM
Giulia Bernardini, Paola Bonizzoni, Gianluca Della Vedova, Murray Patterson
2019 J jnl
A rearrangement distance for fully-labelled trees.
CoRR
Giulia Bernardini, Paola Bonizzoni, Gianluca Della Vedova, Murray Patterson
2019 J jnl
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era.
Quant. Biol.
Raffaella Rizzi, Stefano Beretta, Murray Patterson, Yuri Pirola, Marco Previtali, Gianluca Della Vedova, Paola Bonizzoni
2018 J jnl
HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads.
BMC Bioinform.
Stefano Beretta, Murray Patterson, Simone Zaccaria, Gianluca Della Vedova, Paola Bonizzoni
2018 — conf
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data.
ICCABS
Simone Ciccolella, Mauricio Soto Gomez, Murray Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni
2017 C conf
Character-Based Phylogeny Construction and Its Application to Tumor Evolution.
CiE
Gianluca Della Vedova, Murray Patterson, Raffaella Rizzi, Mauricio Soto Gomez
2016 J jnl
PWHATSHAP: efficient haplotyping for future generation sequencing.
BMC Bioinform.
Andrea Bracciali, Marco Aldinucci, Murray Patterson, Tobias Marschall, Nadia Pisanti, Ivan Merelli, Massimo Torquati
2015 J jnl
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.
J. Comput. Biol.
Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth
2014 — conf
High-Performance Haplotype Assembly.
CIBB
Marco Aldinucci, Andrea Bracciali, Tobias Marschall, Murray Patterson, Nadia Pisanti, Massimo Torquati
2014 B conf
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads.
RECOMB
Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth
2013 C conf
Hypergraph Covering Problems Motivated by Genome Assembly Questions.
IWOCA
Cédric Chauve, Murray Patterson, Ashok Rajaraman
2013 J jnl
Hypergraph covering problems motivated by genome assembly questions.
CoRR
Cédric Chauve, Murray Patterson, Ashok Rajaraman
2013 J jnl
Lateral gene transfer, rearrangement, reconciliation.
BMC Bioinform.
Murray Patterson, Gergely J. Szöllosi, Vincent Daubin, Eric Tannier
2013 C conf
Linearization of ancestral multichromosomal genomes.
CTW
Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
2013 J jnl
Mapping proteins in the presence of paralogs using units of coevolution.
BMC Bioinform.
Mohammed El-Kebir, Tobias Marschall, Inken Wohlers, Murray Patterson, Jaap Heringa, Alexander Schönhuth, Gunnar W. Klau
2012 J jnl
Hardness results on the gapped consecutive-ones property problem.
Discret. Appl. Math.
Ján Manuch, Murray Patterson, Cédric Chauve
2012 J jnl
Linearization of ancestral multichromosomal genomes.
BMC Bioinform.
Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
2011 J jnl
Consistency of Sequence-Based Gene Clusters.
J. Comput. Biol.
Roland Wittler, Ján Manuch, Murray Patterson, Jens Stoye
2011 J jnl
The Complexity of the Gapped Consecutive-Ones Property Problem for Matrices of Bounded Maximum Degree.
J. Comput. Biol.
Ján Manuch, Murray Patterson
2011 — conf
Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character Trees.
ISBRA
Ján Manuch, Murray Patterson, Arvind Gupta
2011 B conf
Tractability Results for the Consecutive-Ones Property with Multiplicity.
CPM
Cédric Chauve, Ján Manuch, Murray Patterson, Roland Wittler
2010 A conf
Complexity of Finding Non-Planar Rectilinear Drawings of Graphs.
GD
Ján Manuch, Murray Patterson, Sheung-Hung Poon, Chris Thachuk
2010 — conf
The Complexity of the Gapped Consecutive-Ones Property Problem for Matrices of Bounded Maximum Degree.
RECOMB-CG
Ján Manuch, Murray Patterson
2009 J jnl
Hardness Results for the Gapped Consecutive-Ones Property
CoRR
Cédric Chauve, Ján Manuch, Murray Patterson
2009 J jnl
On the Gapped Consecutive-Ones Property.
Electron. Notes Discret. Math.
Cédric Chauve, Ján Manuch, Murray Patterson
2009 Misc conf
On the Generalised Character Compatibility Problem for Non-branching Character Trees.
COCOON
Ján Manuch, Murray Patterson, Arvind Gupta
2007 A* conf
Grounding for Model Expansion in k-Guarded Formulas with Inductive Definitions.
IJCAI
Murray Patterson, Yongmei Liu, Eugenia Ternovska, Arvind Gupta
2003 J jnl
High-Resolution Modeling of Energy-Services Supply Systems Using
Ann. Oper. Res.
Thomas Bruckner, Robbie Morrison, Chris Handley, Murray Patterson