Mulin Jun Li

23 papers Journal 23
YearRankTypeTitle / Venue / Authors
2025 J jnl
A Specialized Large Language Model for Clinical Reasoning and Diagnosis in Rare Diseases.
CoRR
Tao Yang, Dandan Huang, Yunting Lin, Pengfei Wu, Zhikun Wu, Gangyuan Ma, Yulan Lu, Xinran Dong, Dingpeng Li, Junshuang Ge, Zhiyan Zhang, Xuanzhao Huang, Wenyan Nong, Yao Zhou, Hui Tang, Hongxi Yang, Shijie Zhang, Juan Li, Xiaojun Cao, Lin Yang, Xia Gao, Kaishou Xu, Xiaoqiong Gu, Wen Zhang, Huimin Xia, Li Liu, Wenhao Zhou, Mulin Jun Li
2024 J jnl
SingleQ: a comprehensive database of single-cell expression quantitative trait loci (sc-eQTLs) cross human tissues.
Database J. Biol. Databases Curation
Zhiwei Zhou, Jingyi Du, Jianhua Wang, Liangyi Liu, M. Gracie Gordon, Chun Jimmie Ye, Joseph E. Powell, Mulin Jun Li, Shuquan Rao
2023 J jnl
Inferring CTCF-binding patterns and anchored loops across human tissues and cell types.
Patterns
Hang Xu, Xianfu Yi, Xutong Fan, Chengyue Wu, Wei Wang, Xinlei Chu, Shijie Zhang, Xiaobao Dong, Zhao Wang, Jianhua Wang, Yao Zhou, Ke Zhao, Hongcheng Yao, Nan Zheng, Junwen Wang, Yupeng Chen, Dariusz Plewczynski, Pak Chung Sham, Kexin Chen, Dandan Huang, Mulin Jun Li
2023 J jnl
QTLbase2: an enhanced catalog of human quantitative trait loci on extensive molecular phenotypes.
Nucleic Acids Res.
Dandan Huang, Xiangling Feng, Hongxi Yang, Jianhua Wang, Wenwen Zhang, Xutong Fan, Xiaobao Dong, Kexin Chen, Ying Yu, Xin Ma, Xianfu Yi, Mulin Jun Li
2022 J jnl
VannoPortal: multiscale functional annotation of human genetic variants for interrogating molecular mechanism of traits and diseases.
Nucleic Acids Res.
Dandan Huang, Yao Zhou, Xianfu Yi, Xutong Fan, Jianhua Wang, Hongcheng Yao, Pak Chung Sham, Jihui Hao, Kexin Chen, Mulin Jun Li
2022 J jnl
webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study.
Nucleic Acids Res.
Chen Cao, Jianhua Wang, Devin Kwok, Feifei Cui, Zilong Zhang, Da Zhao, Mulin Jun Li, Quan Zou
2021 J jnl
vSampler: fast and annotation-based matched variant sampling tool.
Bioinform.
Dandan Huang, Zhao Wang, Yao Zhou, Qian Liang, Pak Chung Sham, Hongcheng Yao, Mulin Jun Li
2020 J jnl
CAUSALdb: a database for disease/trait causal variants identified using summary statistics of genome-wide association studies.
Nucleic Acids Res.
Jianhua Wang, Dandan Huang, Yao Zhou, Hongcheng Yao, Huanhuan Liu, Sinan Zhai, Chengwei Wu, Zhanye Zheng, Ke Zhao, Zhao Wang, Xianfu Yi, Shijie Zhang, Xiaorong Liu, Zipeng Liu, Kexin Chen, Ying Yu, Pak Chung Sham, Mulin Jun Li
2020 J jnl
Methods and resources to access mutation-dependent effects on cancer drug treatment.
Briefings Bioinform.
Hongcheng Yao, Qian Liang, Xinyi Qian, Junwen Wang, Pak Chung Sham, Mulin Jun Li
2020 J jnl
QTLbase: an integrative resource for quantitative trait loci across multiple human molecular phenotypes.
Nucleic Acids Res.
Zhanye Zheng, Dandan Huang, Jianhua Wang, Ke Zhao, Yao Zhou, Zhenyang Guo, Sinan Zhai, Hang Xu, Hui Cui, Hongcheng Yao, Zhao Wang, Xianfu Yi, Shijie Zhang, Pak Chung Sham, Mulin Jun Li
2018 J jnl
A powerful approach reveals numerous expression quantitative trait haplotypes in multiple tissues.
Bioinform.
Dingge Ying, Mulin Jun Li, Pak Chung Sham, Miao-Xin Li
2018 J jnl
GWAS4D: multidimensional analysis of context-specific regulatory variant for human complex diseases and traits.
Nucleic Acids Res.
Dandan Huang, Xianfu Yi, Shijie Zhang, Zhanye Zheng, Panwen Wang, Chenghao Xuan, Pak Chung Sham, Junwen Wang, Mulin Jun Li
2017 J jnl
mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers.
Nucleic Acids Res.
Mulin Jun Li, Hongcheng Yao, Dandan Huang, Huanhuan Liu, Zipeng Liu, Hang Xu, Yiming Qin, Jeanette Prinz, Weiyi Xia, Panwen Wang, Bin Yan, Nhan L. Tran, Jean-Pierre A. Kocher, Pak Chung Sham, Junwen Wang
2016 J jnl
GWASdb v2: an update database for human genetic variants identified by genome-wide association studies.
Nucleic Acids Res.
Mulin Jun Li, Zipeng Liu, Panwen Wang, Maria P. Wong, Matthew R. Nelson, Jean-Pierre A. Kocher, Meredith Yeager, Pak Chung Sham, Stephen J. Chanock, Zhengyuan Xia, Junwen Wang
2016 J jnl
Predicting regulatory variants with composite statistic.
Bioinform.
Mulin Jun Li, Zhicheng Pan, Zipeng Liu, Jiexing Wu, Panwen Wang, Yun Zhu, Feng Xu, Zhengyuan Xia, Pak Chung Sham, Jean-Pierre A. Kocher, Miao-Xin Li, Jun S. Liu, Junwen Wang
2015 J jnl
ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks.
Nucleic Acids Res.
Panwen Wang, Jing Qin, Yiming Qin, Yun Zhu, Lily Yan Wang, Mulin Jun Li, Michael Q. Zhang, Junwen Wang
2015 J jnl
Exploring the function of genetic variants in the non-coding genomic regions: approaches for identifying human regulatory variants affecting gene expression.
Briefings Bioinform.
Mulin Jun Li, Bin Yan, Pak Chung Sham, Junwen Wang
2014 J jnl
DDGni: Dynamic delay gene-network inference from high-temporal data using gapped local alignment.
Bioinform.
Hari Krishna Yalamanchili, Bin Yan, Mulin Jun Li, Jing Qin, Zhongying Zhao, Francis Y. L. Chin, Junwen Wang
2014 J jnl
dbPSHP: a database of recent positive selection across human populations.
Nucleic Acids Res.
Mulin Jun Li, Lily Yan Wang, Zhengyuan Xia, Maria P. Wong, Pak Chung Sham, Junwen Wang
2013 J jnl
GWAS3D: detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications.
Nucleic Acids Res.
Mulin Jun Li, Lily Yan Wang, Zhengyuan Xia, Pak Chung Sham, Junwen Wang
2012 J jnl
GWASdb: a database for human genetic variants identified by genome-wide association studies.
Nucleic Acids Res.
Mulin Jun Li, Panwen Wang, Xiaorong Liu, Ee Lyn Lim, Zhangyong Wang, Meredith Yeager, Maria P. Wong, Pak Chung Sham, Stephen J. Chanock, Junwen Wang
2011 J jnl
ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor.
Nucleic Acids Res.
Jing Qin, Mulin Jun Li, Panwen Wang, Michael Q. Zhang, Junwen Wang
2010 J jnl
FastPval: a fast and memory efficient program to calculate very low
Bioinform.
Mulin Jun Li, Pak Chung Sham, Junwen Wang