Muhammad Khalid Khan Niazi

24 papers Journal 19Unranked 5
YearRankTypeTitle / Venue / Authors
2026 J jnl
Inferring Clinically Relevant Molecular Subtypes of Pancreatic Cancer from Routine Histopathology Using Deep Learning.
CoRR
Abdul Rehman Akbar, Alejandro Levya, Ashwini Esnakula, Elshad Hasanov, Anne Noonan, Upender Manne, Vaibhav Sahai, Lingbin Meng, Susan Tsai, Anil Parwani, Wei Chen, Ashish Manne, Muhammad Khalid Khan Niazi
2026 J jnl
PathoScribe: Transforming Pathology Data into a Living Library with a Unified LLM-Driven Framework for Semantic Retrieval and Clinical Integration.
CoRR
Abdul Rehman Akbar, Samuel Wales-McGrath, Alejandro Levya, Lina Gokhale, Rajendra Singh, Wei Chen, Anil Parwani, Muhammad Khalid Khan Niazi
2026 J jnl
RANGER: Sparsely-Gated Mixture-of-Experts with Adaptive Retrieval Re-ranking for Pathology Report Generation.
CoRR
Yixin Chen, Ziyu Su, Hikmat Khan, Muhammad Khalid Khan Niazi
2026 J jnl
Weakly Supervised Teacher-Student Framework with Progressive Pseudo-mask Refinement for Gland Segmentation.
CoRR
Hikmat Khan, Wei Chen, Muhammad Khalid Khan Niazi
2025 J jnl
CellEcoNet: Decoding the Cellular Language of Pathology with Deep Learning for Invasive Lung Adenocarcinoma Recurrence Prediction.
CoRR
Abdul Rehman Akbar, Usama Sajjad, Ziyu Su, Wencheng Li, Fei Xing, Jimmy Ruiz, Wei Chen, Muhammad Khalid Khan Niazi
2025 J jnl
Classification-based pathway analysis using GPNet with novel
Briefings Bioinform.
Hao Lu, Mostafa Rezapour, Haseebullah Baha, Muhammad Khalid Khan Niazi, Aarthi Narayanan, Metin Nafi Gürcan
2025 J jnl
HistoChat: Instruction-tuning multimodal vision language assistant for colorectal histopathology on limited data.
Patterns
Usman Afzaal, Ziyu Su, Usama Sajjad, Thomas Stack, Hao Lu, Shuo Niu, Abdul Rehman Akbar, Metin Nafi Gürcan, Muhammad Khalid Khan Niazi
2025 J jnl
Hyperparameter Optimization and Reproducibility in Deep Learning Model Training.
CoRR
Usman Afzaal, Ziyu Su, Usama Sajjad, Hao Lu, Mostafa Rezapour, Metin Nafi Gürcan, Muhammad Khalid Khan Niazi
2025 J jnl
Morphology-Aware Prognostic model for Five-Year Survival Prediction in Colorectal Cancer from H&E Whole Slide Images.
CoRR
Usama Sajjad, Abdul Rehman Akbar, Ziyu Su, Deborah Knight, Wendy L. Frankel, Metin N. Gurcan, Wei Chen, Muhammad Khalid Khan Niazi
2025 J jnl
Predicting Neo-Adjuvant Chemotherapy Response in Triple-Negative Breast Cancer Using Pre-Treatment Histopathologic Images.
CoRR
Hikmat Khan, Ziyu Su, Huina Zhang, Yihong Wang, Bohan Ning, Shi Wei, Hua Guo, Zaibo Li, Muhammad Khalid Khan Niazi
2025 J jnl
Progressive Translation of H&E to IHC with Enhanced Structural Fidelity.
CoRR
Yuhang Kang, Ziyu Su, Tianyang Wang, Zaibo Li, Wei Chen, Muhammad Khalid Khan Niazi
2025 J jnl
Streamline pathology foundation model by cross-magnification distillation.
CoRR
Ziyu Su, Abdul Rehman Akbar, Usama Sajjad, Anil V. Parwani, Muhammad Khalid Khan Niazi
2024 J jnl
Cross-Attention-Based Saliency Inference for Predicting Cancer Metastasis on Whole Slide Images.
IEEE J. Biomed. Health Informatics
Ziyu Su, Mostafa Rezapour, Usama Sajjad, Shuo Niu, Metin Nafi Gürcan, Muhammad Khalid Khan Niazi
2024 J jnl
Gene pointNet for tumor classification.
Neural Comput. Appl.
Hao Lu, Mostafa Rezapour, Haseebullah Baha, Muhammad Khalid Khan Niazi, Aarthi Narayanan, Metin Nafi Gürcan
2024 J jnl
Machine Learning-Based Analysis of Ebola Virus' Impact on Gene Expression in Nonhuman Primates.
CoRR
Mostafa Rezapour, Muhammad Khalid Khan Niazi, Hao Lu, Aarthi Narayanan, Metin Nafi Gürcan
2024 J jnl
Machine learning-based analysis of Ebola virus' impact on gene expression in nonhuman primates.
Frontiers Artif. Intell.
Mostafa Rezapour, Muhammad Khalid Khan Niazi, Hao Lu, Aarthi Narayanan, Metin Nafi Gürcan
2023 J jnl
Attention2Minority: A salient instance inference-based multiple instance learning for classifying small lesions in whole slide images.
Comput. Biol. Medicine
Ziyu Su, Mostafa Rezapour, Usama Sajjad, Metin Nafi Gürcan, Muhammad Khalid Khan Niazi
2023 J jnl
Attention2Minority: A salient instance inference-based multiple instance learning for classifying small lesions in whole slide images.
CoRR
Ziyu Su, Mostafa Rezapour, Usama Sajjad, Metin Nafi Gürcan, Muhammad Khalid Khan Niazi
2023 J jnl
Cross-attention-based saliency inference for predicting cancer metastasis on whole slide images.
CoRR
Ziyu Su, Mostafa Rezapour, Usama Sajjad, Shuo Niu, Metin Nafi Gürcan, Muhammad Khalid Khan Niazi
2020 — conf
Hotspot detection in pancreatic neuroendocrine images using local depth.
Digital Pathology
Muhammad Khalid Khan Niazi, Katherine Moore, Kenneth S. Berenhaut, Douglas J. Hartman, Liron Pantanowitz, Metin N. Gurcan
2020 — conf
Identifying bladder layers from H and E images using U-Net image segmentation.
Digital Pathology
Muhammad Khalid Khan Niazi, Enes Yazgan, Cheryl Lee, Anil Parwani, Metin N. Gurcan
2020 — conf
Segmentation of mycobacterium tuberculosis bacilli clusters from acid-fast stained lung biopsies: a deep learning approach.
Digital Pathology
Thomas E. Tavolara, Muhammad Khalid Khan Niazi, Gillian Beamer, Metin N. Gurcan
2019 — conf
Colorectal tumor identification by transferring knowledge from pan-cytokeratin to H&E.
Digital Pathology
Thomas E. Tavolara, Muhammad Khalid Khan Niazi, Wei Chen, Wendy L. Frankel, Metin N. Gurcan
2019 — conf
Generalization of tumor identification algorithms.
Digital Pathology
Muhammad Khalid Khan Niazi, Thomas E. Tavolara, Çaglar Senaras, Gary Tozbikian, Douglas J. Hartman, Vidya Arole, Liron Pantanowitz, Metin N. Gurcan