Morihiro Hayashida

56 papers B 3C 5Journal 36Unranked 11

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	Volume formula and growth rates of the balls of strings under the edit distances. Appl. Math. Comput. Hitoshi Koyano, Morihiro Hayashida
2021	J	`jnl`	Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework. Briefings Bioinform. Fuyi Li, Jinxiang Chen, Zongyuan Ge, Ya Wen, Yanwei Yue, Morihiro Hayashida, Abdelkader Baggag, Halima Bensmail, Jiangning Song
2020	C	`conf`	Improving Accuracy and Speed of Network-based Intrusion Detection using Gradient Boosting Trees. ICISSP Ryosuke Terado, Morihiro Hayashida
2020	—	`conf`	Measuring the Similarity of Proteomes using Grammar-based Compression via Domain Combinations. BIOINFORMATICS Morihiro Hayashida, Hitoshi Koyano, Jose C. Nacher
2019	—	`conf`	Artificial Neural Network Approach to Prediction of Protein-RNA Residue-base Contacts. BIOINFORMATICS Morihiro Hayashida, Jose C. Nacher, Hitoshi Koyano
2019	J	`jnl`	Bastion3: a two-layer ensemble predictor of type III secreted effectors. Bioinform. Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow
2019	J	`jnl`	Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles. J. Bioinform. Comput. Biol. Teppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher
2019	J	`jnl`	Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings. J. Comput. Syst. Sci. Hitoshi Koyano, Morihiro Hayashida, Tatsuya Akutsu
2019	J	`jnl`	Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. Briefings Bioinform. Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow
2018	J	`jnl`	Analysis of Critical and Redundant Vertices in Controlling Directed Complex Networks Using Feedback Vertex Sets. J. Comput. Biol. Yu Bao, Morihiro Hayashida, Pengyu Liu, Masayuki Ishitsuka, Jose C. Nacher, Tatsuya Akutsu
2018	J	`jnl`	Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors. Bioinform. Jiawei Wang, Bingjiao Yang, André Leier, Tatiana T. Marquez-Lago, Morihiro Hayashida, Andrea Rocker, Yanju Zhang, Tatsuya Akutsu, Kuo-Chen Chou, Richard A. Strugnell, Jiangning Song, Trevor Lithgow
2018	C	`conf`	Convolutional Neural Network Approach to Lung Cancer Classification Integrating Protein Interaction Network and Gene Expression Profiles. BIBE Teppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher
2018	—	`conf`	Grammar-based Compression for Directed and Undirected Generalized Series-parallel Graphs using Integer Linear Programming. BIOINFORMATICS Morihiro Hayashida, Hitoshi Koyano, Tatsuya Akutsu
2018	J	`jnl`	Improving conditional random field model for prediction of protein-RNA residue-base contacts. Quant. Biol. Morihiro Hayashida, Noriyuki Okada, Mayumi Kamada, Hitoshi Koyano
2018	J	`jnl`	Improving prediction of heterodimeric protein complexes using combination with pairwise kernel. BMC Bioinform. Peiying Ruan, Morihiro Hayashida, Tatsuya Akutsu, Jean-Philippe Vert
2018	J	`jnl`	ncRNA-disease association prediction based on sequence information and tripartite network. BMC Syst. Biol. Takuya Mori, Hayliang Ngouv, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher
2016	J	`jnl`	Critical evaluation of Briefings Bioinform. Chen Li, Catherine Ching Han Chang, Jeremy Nagel, Benjamin T. Porebski, Morihiro Hayashida, Tatsuya Akutsu, Jiangning Song, Ashley M. Buckle
2016	J	`jnl`	Enumeration Method for Structural Isomers Containing User-Defined Structures Based on Breadth-First Search Approach. J. Comput. Biol. Jira Jindalertudomdee, Morihiro Hayashida, Tatsuya Akutsu
2016	J	`jnl`	Enumeration method for tree-like chemical compounds with benzene rings and naphthalene rings by breadth-first search order. BMC Bioinform. Jira Jindalertudomdee, Morihiro Hayashida, Yang Zhao, Tatsuya Akutsu
2016	—	`conf`	Finding Median and Center Strings for a Probability Distribution on a Set of Strings Under Levenshtein Distance Based on Integer Linear Programming. BIOSTEC (Selected Papers) Morihiro Hayashida, Hitoshi Koyano
2016	C	`conf`	Host-Pathogen Protein Interaction Prediction Based on Local Topology Structures of a Protein Interaction Network. BIBE Jira Jindalertudomdee, Morihiro Hayashida, Jiangning Song, Tatsuya Akutsu
2016	—	`conf`	Integer Linear Programming Approach to Median and Center Strings for a Probability Distribution on a Set of Strings. BIOINFORMATICS Morihiro Hayashida, Hitoshi Koyano
2016	J	`jnl`	LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length. BMC Bioinform. Yu Bao, Morihiro Hayashida, Tatsuya Akutsu
2015	J	`jnl`	Grammar-based compression approach to extraction of common rules among multiple trees of glycans and RNAs. BMC Bioinform. Yang Zhao, Morihiro Hayashida, Yue Cao, Jaewook Hwang, Tatsuya Akutsu
2014	J	`jnl`	Domain-Based Approaches to Prediction and Analysis of Protein-Protein Interactions. Int. J. Knowl. Discov. Bioinform. Morihiro Hayashida, Tatsuya Akutsu
2014	J	`jnl`	Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels. BMC Bioinform. Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu
2013	J	`jnl`	Breadth-First Search Approach to Enumeration of Tree-like Chemical Compounds. J. Bioinform. Comput. Biol. Yang Zhao, Morihiro Hayashida, Jira Jindalertudomdee, Hiroshi Nagamochi, Tatsuya Akutsu
2013	J	`jnl`	Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso. BMC Syst. Biol. Morihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu
2012	J	`jnl`	A quadsection algorithm for grammar-based image compression. Integr. Comput. Aided Eng. Morihiro Hayashida, Peiying Ruan, Tatsuya Akutsu
2012	—	`conf`	Finding Conserved Regions in Protein Structures Using Support Vector Machines and Structure Alignment. PRIB Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura
2012	J	`jnl`	Integer Programming-Based Approach to Attractor Detection and Control of Boolean Networks. IEICE Trans. Inf. Syst. Tatsuya Akutsu, Yang Zhao, Morihiro Hayashida, Takeyuki Tamura
2012	—	`conf`	Predicting protein-RNA residue-base contacts using two-dimensional conditional random field. ISB Morihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu
2012	J	`jnl`	Protein complex prediction via improved verification methods using constrained domain-domain matching. Int. J. Bioinform. Res. Appl. Yang Zhao, Morihiro Hayashida, Jose C. Nacher, Hiroshi Nagamochi, Tatsuya Akutsu
2011	J	`jnl`	Conditional random field approach to prediction of protein-protein interactions using domain information. BMC Syst. Biol. Morihiro Hayashida, Mayumi Kamada, Jiangning Song, Tatsuya Akutsu
2011	J	`jnl`	Measuring the Similarity of Protein Structures Using Image Compression Algorithms. IEICE Trans. Inf. Syst. Morihiro Hayashida, Tatsuya Akutsu
2010	—	`conf`	A Quadsection Algorithm for Grammar-Based Image Compression. FGIT Morihiro Hayashida, Peiying Ruan, Tatsuya Akutsu
2010	J	`jnl`	Comparing biological networks via graph compression. BMC Syst. Biol. Morihiro Hayashida, Tatsuya Akutsu
2010	J	`jnl`	Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures. BMC Bioinform. Yang Zhao, Morihiro Hayashida, Tatsuya Akutsu
2010	J	`jnl`	The role of internal duplication in the evolution of multi-domain proteins. Biosyst. Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu
2009	—	`conf`	A Bipartite Graph Based Model of Protein Domain Networks. Complex (1) Jose C. Nacher, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu
2009	J	`jnl`	Analyses and Algorithms for Predecessor and Control Problems for Boolean Networks of Bounded Indegree. Inf. Media Technol. Tatsuya Akutsu, Morihiro Hayashida, Shuqin Zhang, Wai-Ki Ching, Michael K. Ng
2009	J	`jnl`	Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs. Biosyst. Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu
2009	—	`conf`	Integer programming-based methods for attractor detection and control of boolean networks. CDC Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura
2008	J	`jnl`	A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs. Inf. Media Technol. Morihiro Hayashida, Tatsuya Akutsu, Hiroshi Nagamochi
2008	J	`jnl`	Algorithms and Complexity Analyses for Control of Singleton Attractors in Boolean Networks. EURASIP J. Bioinform. Syst. Biol. Morihiro Hayashida, Takeyuki Tamura, Tatsuya Akutsu, Shuqin Zhang, Wai-Ki Ching
2008	—	`conf`	Algorithms for Inference, Analysis and Control of Boolean Networks. AB Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura
2008	B	`conf`	Image Compression-based Approach to Measuring the Similarity of Protein Structures. APBC Morihiro Hayashida, Tatsuya Akutsu
2008	J	`jnl`	Integer programming-based approach to allocation of reporter genes for cell array analysis. Int. J. Bioinform. Res. Appl. Morihiro Hayashida, Fuyan Sun, Sachiyo Aburatani, Katsuhisa Horimoto, Tatsuya Akutsu
2007	B	`conf`	A Novel Clustering Method for Analysis of Biological Networks using Maximal Components of Graphs. APBC Morihiro Hayashida, Tatsuya Akutsu, Hiroshi Nagamochi
2007	J	`jnl`	Algorithms for Finding Small Attractors in Boolean Networks. EURASIP J. Bioinform. Syst. Biol. Shuqin Zhang, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching, Michael Kwok-Po Ng
2007	—	`ch.`	Topological aspects of protein networks. Emergent Intelligence of Networked Agents Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu
2006	J	`jnl`	Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. Tatsuya Akutsu, Morihiro Hayashida, Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto
2006	B	`conf`	On the Complexity of Finding Control Strategies for Boolean Networks. APBC Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael K. Ng
2005	J	`jnl`	Fast image synthesis of virtual objects in a real scene with natural shadings. Syst. Comput. Jpn. Imari Sato, Morihiro Hayashida, Fumiyo Kai, Yoichi Sato, Katsushi Ikeuchi
2004	C	`conf`	Protein Threading with Profiles and Constraints. BIBE Tatsuya Akutsu, Morihiro Hayashida, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto
2003	C	`conf`	Inferring strengths of protein-protein interactions from experimental data using linear programming. ECCB Morihiro Hayashida, Nobuhisa Ueda, Tatsuya Akutsu