Monica Chagoyen

27 papers Journal 24Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
Cell atlases and the developmental foundations of the phenotype.
PLoS Comput. Biol.
Alicia Lou, Monica Chagoyen, Juan F. Poyatos
2025 J jnl
A review on Gene Ontology evaluations.
Database J. Biol. Databases Curation
Borja Pitarch, Monica Chagoyen, Juan A. G. Ranea, Florencio Pazos
2024 J jnl
CoMentG: comprehensive retrieval of generic relationships between biomedical concepts from the scientific literature.
Database J. Biol. Databases Curation
Jorge Novoa, Javier López-Ibáñez, Monica Chagoyen, Juan Antonio Garcia-Ranea, Florencio Pazos
2024 J jnl
Differential expression and co-expression reveal cell types relevant to genetic disorder phenotypes.
Bioinform.
Sergio Alías-Segura, Florencio Pazos, Monica Chagoyen
2023 J jnl
MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis.
Nucleic Acids Res.
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
2021 J jnl
Predicting biological pathways of chemical compounds with a profile-inspired approach.
BMC Bioinform.
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
2019 J jnl
Bacterial Feature Finder (BaFF) - a system for extracting features overrepresented in sets of prokaryotic organisms.
Bioinform.
Javier López-Ibáñez, Laura T. Martín, Monica Chagoyen, Florencio Pazos
2019 J jnl
Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology.
Briefings Bioinform.
Florencio Pazos, Monica Chagoyen
2019 J jnl
Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program.
PLoS Comput. Biol.
Monica Chagoyen, Juan F. Poyatos
2017 J jnl
Factors affecting interactome-based prediction of human genes associated with clinical signs.
BMC Bioinform.
Sara González-Pérez, Florencio Pazos, Monica Chagoyen
2016 J jnl
Characterization of clinical signs in the human interactome.
Bioinform.
Monica Chagoyen, Florencio Pazos
2016 J jnl
MBROLE 2.0 - functional enrichment of chemical compounds.
Nucleic Acids Res.
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
2016 J jnl
Practical analysis of specificity-determining residues in protein families.
Briefings Bioinform.
Monica Chagoyen, Juan A. García-Martín, Florencio Pazos
2013 J jnl
Tools for the functional interpretation of metabolomic experiments.
Briefings Bioinform.
Monica Chagoyen, Florencio Pazos
2011 J jnl
MBRole: enrichment analysis of metabolomic data.
Bioinform.
Monica Chagoyen, Florencio Pazos
2010 J jnl
Quantifying the biological significance of gene ontology biological processes - implications for the analysis of systems-wide data.
Bioinform.
Monica Chagoyen, Florencio Pazos
2009 J jnl
SENT: semantic features in text.
Nucleic Acids Res.
Miguel Vázquez, Pedro Carmona-Saez, Rubén Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
2008 J jnl
Assessment of protein set coherence using functional annotations.
BMC Bioinform.
Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano
2008 — conf
CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem.
BioNLP
Mariana L. Neves, Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano
2008 — conf
Named Entity Recognition and Normalization: A Domain-Specific Language Approach.
IWPACBB
Miguel Vázquez, Monica Chagoyen, Alberto D. Pascual-Montano
2006 J jnl
A literature-based similarity metric for biological processes.
BMC Bioinform.
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, José María Carazo, Alberto D. Pascual-Montano
2006 J jnl
Discovering semantic features in the literature: a foundation for building functional associations.
BMC Bioinform.
Monica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano
2006 J jnl
Integrated analysis of gene expression by association rules discovery.
BMC Bioinform.
Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano
2006 J jnl
bioNMF: a versatile tool for non-negative matrix factorization in biology.
BMC Bioinform.
Alberto D. Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, José María Carazo, Roberto D. Pascual-Marqui
2004 J jnl
Designing and executing scientific workflows with a programmable integrator.
Bioinform.
Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, José María Carazo, Amarnath Gupta
2003 — conf
A Semantic Mediation Approach for Problems in Computational Molecular Biology.
CSB
Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, Simone Santini, Bertram Ludäscher, José María Carazo, Amarnath Gupta
1999 J jnl
Organising multi-dimensional biological image information: the BioImage Database.
Nucleic Acids Res.
José María Carazo, Ernst H. K. Stelzer, A. Engel, I. Fita, C. Henn, J. Machtynger, P. McNeil, David M. Shotton, Monica Chagoyen, Pedro A. de Alarcón, R. Fritsch, J. B. Heymann, Susana G. Kalko, J. J. Pittet, Patricia Rodriguez-Tomé, Thomas Boudier