Mohammad Lotfollahi

13 papers A* 1B 1Journal 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
A Standardized Framework For Evaluating Gene Expression Generative Models.
CoRR
Andrea Rubbi, Andrea Giuseppe Di Francesco, Mohammad Lotfollahi, Pietro Liò
2026 J jnl
DirMoE: Dirichlet-routed Mixture of Experts.
CoRR
Amirhossein Vahidi, Hesam Asadollahzadeh, Navid Akhavan Attar, Marie Moullet, Kevin Ly, Xingyi Yang, Mohammad Lotfollahi
2026 J jnl
MixFlow: Mixture-Conditioned Flow Matching for Out-of-Distribution Generalization.
CoRR
Andrea Rubbi, Amir Akbarnejad, Mohammad V. Sanian, Aryan Yazdan Parast, Hesam Asadollahzadeh, Arian Amani, Naveed Akhtar, Sarah Cooper, Andrew Bassett, Pietro Liò, Lassi Paavolainen, Sattar Vakili, Mohammad Lotfollahi
2025 J jnl
3D-Guided Scalable Flow Matching for Generating Volumetric Tissue Spatial Transcriptomics from Serial Histology.
CoRR
Mohammad V. Sanian, Arshia Hemmat, Amirhossein Vahidi, Jonas Maaskola, Jimmy Tsz Hang Lee, Stanislaw Makarchuk, Yeliz Demirci, Nana-Jane Chipampe, Muzlifah Haniffa, Ömer Bayraktar, Lassi Paavolainen, Mohammad Lotfollahi
2025 B conf
Integration and Querying of Multimodal Single-Cell Data with PoE-VAE.
RECOMB
Anastasia Litinetskaya, Maiia Schulman, Fabiola Curion, Artur Szalata, Alireza Omidi, Mohammad Lotfollahi, Fabian J. Theis
2025 J jnl
SIGMMA: Hierarchical Graph-Based Multi-Scale Multi-modal Contrastive Alignment of Histopathology Image and Spatial Transcriptome.
CoRR
Dabin Jeong, Amirhossein Vahidi, Ciro Ramírez-Suástegui, Marie Moullet, Kevin Ly, Mohammad V. Sanian, Sebastian Birk, Yinshui Chang, Adam Boxall, Daniyal Jafree, Lloyd Steele, Vijaya Baskar MS, Muzlifah Haniffa, Mohammad Lotfollahi
2024 J jnl
Deep learning in spatially resolved transcriptomics: a comprehensive technical view.
Briefings Bioinform.
Roxana Zahedi, Reza Ghamsari, Ahmadreza Argha, Callum Macphillamy, Amin Beheshti, Roohallah Alizadehsani, Nigel H. Lovell, Mohammad Lotfollahi, Hamid Alinejad-Rokny
2022 A* conf
Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution.
NeurIPS
Leon Hetzel, Simon Böhm, Niki Kilbertus, Stephan Günnemann, Mohammad Lotfollahi, Fabian J. Theis
2022 J jnl
Predicting single-cell perturbation responses for unseen drugs.
CoRR
Leon Hetzel, Simon Böhm, Niki Kilbertus, Stephan Günnemann, Mohammad Lotfollahi, Fabian J. Theis
2020 J jnl
Conditional out-of-distribution generation for unpaired data using transfer VAE.
Bioinform.
Mohammad Lotfollahi, Mohsen Naghipourfar, Fabian J. Theis, F. Alexander Wolf
2020 J jnl
Deep packet: a novel approach for encrypted traffic classification using deep learning.
Soft Comput.
Mohammad Lotfollahi, Mahdi Jafari Siavoshani, Ramin Shirali Hossein Zade, Mohammdsadegh Saberian
2019 J jnl
Conditional out-of-sample generation for unpaired data using trVAE.
CoRR
Mohammad Lotfollahi, Mohsen Naghipourfar, Fabian J. Theis, F. Alexander Wolf
2017 J jnl
Deep Packet: A Novel Approach For Encrypted Traffic Classification Using Deep Learning.
CoRR
Mohammad Lotfollahi, Ramin Shirali Hossein Zade, Mahdi Jafari Siavoshani, Mohammdsadegh Saberian