Mohammad Arfan Ikram

58 papers B 4Journal 38Unranked 16

Year	Rank	Type	Title / Venue / Authors
2022	J	`jnl`	Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021. CoRR Carole H. Sudre, Kimberlin M. H. van Wijnen, Florian Dubost, Hieab Adams, David Atkinson, Frederik Barkhof, Mahlet A. Birhanu, Esther E. Bron, Robin Camarasa, Nish Chaturvedi, Yuan Chen, Zihao Chen, Shuai Chen, Qi Dou, Tavia E. Evans, Ivan Ezhov, Haojun Gao, Marta Gironés-Sangüesa, Juan Domingo Gispert, Beatriz Gomez Anson, Alun D. Hughes, Mohammad Arfan Ikram, Silvia Ingala, Hans Rolf Jäger, Florian Kofler, Hugo J. Kuijf, Denis Kutnar, Minho Lee, Bo Li, Luigi Lorenzini, Bjoern H. Menze, José Luis Molinuevo, Yiwei Pan, Élodie Puybareau, Rafael Rehwald, Ruisheng Su, Pengcheng Shi, Lorna Smith, Therese Tillin, Guillaume Tochon, Hélène Urien, Bas H. M. van der Velden, Isabelle F. van der Velpen, Benedikt Wiestler, Frank J. Wolters, Pinar Yilmaz, Marius de Groot, Meike W. Vernooij, Marleen de Bruijne
2021	J	`jnl`	Differences Between MR Brain Region Segmentation Methods: Impact on Single-Subject Analysis. Frontiers Big Data Wyke Huizinga, Dirk H. J. Poot, Elisabeth J. Vinke, F. Wenzel, Esther Bron, N. Toussaint, Christian Ledig, Henri A. Vrooman, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Stefan Klein
2021	B	`conf`	Learning unbiased group-wise registration (LUGR) and joint segmentation: evaluation on longitudinal diffusion MRI. Image Processing Bo Li, Wiro J. Niessen, Stefan Klein, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
2021	J	`jnl`	Longitudinal diffusion MRI analysis using Segis-Net: A single-step deep-learning framework for simultaneous segmentation and registration. NeuroImage Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
2021	J	`jnl`	Progression along data-driven disease timelines is predictive of Alzheimer's disease in a population-based cohort. NeuroImage Vikram Venkatraghavan, Elisabeth J. Vinke, Esther E. Bron, Wiro J. Niessen, Mohammad Arfan Ikram, Stefan Klein, Meike W. Vernooij
2020	J	`jnl`	Cortical gyrification in relation to age and cognition in older adults. NeuroImage Sander Lamballais, Elisabeth J. Vinke, Meike W. Vernooij, Mohammad Arfan Ikram, Ryan L. Muetzel
2020	J	`jnl`	Learning unbiased registration and joint segmentation: evaluation on longitudinal diffusion MRI. CoRR Bo Li, Wiro J. Niessen, Stefan Klein, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
2020	J	`jnl`	Longitudinal diffusion MRI analysis using Segis-Net: a single-step deep-learning framework for simultaneous segmentation and registration. CoRR Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
2020	J	`jnl`	Neuro4Neuro: A neural network approach for neural tract segmentation using large-scale population-based diffusion imaging. CoRR Bo Li, Marius de Groot, Rebecca M. E. Steketee, Rozanna Meijboom, Marion Smits, Meike W. Vernooij, Mohammad Arfan Ikram, Jiren Liu, Wiro J. Niessen, Esther E. Bron
2020	J	`jnl`	Neuro4Neuro: A neural network approach for neural tract segmentation using large-scale population-based diffusion imaging. NeuroImage Bo Li, Marius de Groot, Rebecca M. E. Steketee, Rozanna Meijboom, Marion Smits, Meike W. Vernooij, Mohammad Arfan Ikram, Jiren Liu, Wiro J. Niessen, Esther E. Bron
2020	J	`jnl`	Orientation Prior and Consistent Model Selection Increase Sensitivity of Tract-Based Spatial Statistics in Crossing-Fiber Regions. IEEE Trans. Medical Imaging Georgius A. M. Arkesteijn, Dirk H. J. Poot, Mohammad Arfan Ikram, Wiro J. Niessen, Lucas J. van Vliet, Meike W. Vernooij, Frans M. Vos
2020	J	`jnl`	Spatially Regularized Shape Analysis of the Hippocampus Using P-Spline Based Shape Regression. IEEE J. Biomed. Health Informatics Hakim C. Achterberg, Johan J. de Rooi, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen, Paul H. C. Eilers, Marleen de Bruijne
2020	J	`jnl`	Weakly supervised object detection with 2D and 3D regression neural networks. Medical Image Anal. Florian Dubost, Hieab Adams, Pinar Yilmaz, Gerda Bortsova, Gijs van Tulder, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
2019	J	`jnl`	3D regression neural network for the quantification of enlarged perivascular spaces in brain MRI. Medical Image Anal. Florian Dubost, Hieab Adams, Gerda Bortsova, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
2019	—	`conf`	A Hybrid Deep Learning Framework for Integrated Segmentation and Registration: Evaluation on Longitudinal White Matter Tract Changes. MICCAI (3) Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther E. Bron
2019	J	`jnl`	A hybrid deep learning framework for integrated segmentation and registration: evaluation on longitudinal white matter tract changes. CoRR Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, Mohammad Arfan Ikram, Meike W. Vernooij, Esther Bron
2019	—	`conf`	Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network. MICCAI (4) Kimberlin M. H. van Wijnen, Florian Dubost, Pinar Yilmaz, Mohammad Arfan Ikram, Wiro J. Niessen, Hieab Adams, Meike W. Vernooij, Marleen de Bruijne
2019	J	`jnl`	Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network. CoRR Kimberlin M. H. van Wijnen, Florian Dubost, Pinar Yilmaz, Mohammad Arfan Ikram, Wiro J. Niessen, Hieab Adams, Meike W. Vernooij, Marleen de Bruijne
2019	J	`jnl`	Enlarged perivascular spaces in brain MRI: Automated quantification in four regions. NeuroImage Florian Dubost, Pinar Yilmaz, Hieab Adams, Gerda Bortsova, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
2019	—	`conf`	Hydranet: Data Augmentation for Regression Neural Networks. MICCAI (4) Florian Dubost, Gerda Bortsova, Hieab Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
2019	J	`jnl`	Independent Multiple Factor Association Analysis for Multiblock Data in Imaging Genetics. Neuroinformatics Natalia Vilor-Tejedor, Mohammad Arfan Ikram, Gennady V. Roshchupkin, Alejandro Cáceres, Silvia Alemany, Meike W. Vernooij, Wiro J. Niessen, Cornelia M. van Duijn, Jordi Sunyer, Hieab H. Adams, Juan R. González
2019	J	`jnl`	Multi-Site Meta-Analysis of Morphometry. IEEE ACM Trans. Comput. Biol. Bioinform. Neda Jahanshad, Joshua Faskowitz, Gennady V. Roshchupkin, Derrek P. Hibar, Boris A. Gutman, Nicholas J. Tustison, Hieab H. H. Adams, Wiro J. Niessen, Meike W. Vernooij, Mohammad Arfan Ikram, Marcel P. Zwiers, Alejandro Arias-Vasquez, Barbara Franke, Jennifer L. Kroll, Benson Mwangi, Jair C. Soares, Alex Ing, Sylvane Desrivières, Gunter Schumann, Narelle K. Hansell, Greig I. de Zubicaray, Katie L. McMahon, Nicholas G. Martin, Margaret J. Wright, Paul M. Thompson
2019	J	`jnl`	Patterns of functional connectivity in an aging population: The Rotterdam Study. NeuroImage Hazel I. Zonneveld, Raimon H. R. Pruim, Daniel Bos, Henri A. Vrooman, Ryan L. Muetzel, Albert Hofman, Serge A. R. B. Rombouts, Aad van der Lugt, Wiro J. Niessen, Mohammad Arfan Ikram, Meike W. Vernooij
2019	J	`jnl`	Reproducible White Matter Tract Segmentation Using 3D U-Net on a Large-scale DTI Dataset. CoRR Bo Li, Marius de Groot, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen, Esther Bron
2019	J	`jnl`	Weakly Supervised Object Detection with 2D and 3D Regression Neural Networks. CoRR Florian Dubost, Hieab Adams, Pinar Yilmaz, Gerda Bortsova, Gijs van Tulder, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
2018	J	`jnl`	3D Regression Neural Network for the Quantification of Enlarged Perivascular Spaces in Brain MRI. CoRR Florian Dubost, Hieab Adams, Gerda Bortsova, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
2018	J	`jnl`	A spatio-temporal reference model of the aging brain. NeuroImage Wyke Huizinga, Dirk H. J. Poot, Meike W. Vernooij, Gennady Roshchupkin, Esther Bron, Mohammad Arfan Ikram, Daniel Rueckert, Wiro J. Niessen, Stefan Klein
2018	J	`jnl`	Disconnection due to white matter hyperintensities is associated with lower cognitive scores. NeuroImage Carolyn D. Langen, Lotte G. M. Cremers, Marius de Groot, Tonya White, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij
2018	J	`jnl`	Hydranet: Data Augmentation for Regression Neural Networks. CoRR Florian Dubost, Gerda Bortsova, Hieab Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
2018	—	`conf`	Reproducible White Matter Tract Segmentation Using 3D U-Net on a Large-scale DTI Dataset. MLMI@MICCAI Bo Li, Marius de Groot, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen, Esther E. Bron
2018	J	`jnl`	Subregional volumes of the hippocampus in relation to cognitive function and risk of dementia. NeuroImage Tavia E. Evans, Hieab H. H. Adams, Silvan Licher, Frank J. Wolters, Aad van der Lugt, M. Kamran Ikram, Michael J. O'Sullivan, Meike W. Vernooij, Mohammad Arfan Ikram
2017	J	`jnl`	Automatic identification of variables in epidemiological datasets using logic regression. BMC Medical Informatics Decis. Mak. Matthias W. Lorenz, Negin Ashtiani Abdi, Frank Scheckenbach, Anja Pflug, Alpaslan Bülbül, Alberico L. Catapano, Stefan Agewall, Marat Ezhov, Michiel L. Bots, Stefan Kiechl, Andreas Orth, Giuseppe D. Norata, Jean Philippe Empana, Hung-Ju Lin, Stela McLachlan, Lena Bokemark, Kimmo Ronkainen, Mauro Amato, Ulf Schminke, Sathanur R. Srinivasan, Lars Lind, Akihiko Kato, Chrystosomos Dimitriadis, Tadeusz Przewlocki, Shuhei Okazaki, Coen D. A. Stehouwer, Tatjana Lazarevic, Peter Willeit, David N. Yanez, Helmuth Steinmetz, Dirk Sander, Holger Poppert, Moise Desvarieux, Mohammad Arfan Ikram, Sebastjan Bevc, Daniel Staub, Cesare R. Sirtori, Bernhard Iglseder, Gunnar Engström, Giovanni Tripepi, Oscar Beloqui, Moo-Sik Lee, Alfonsa Friera, Wuxiang Xie, Liliana Grigore, Matthieu Plichart, Ta-Chen Su, Christine Robertson, Caroline Schmidt, Tomi-Pekka Tuomainen, Fabrizio Veglia, Henry Völzke, Giel Nijpels, Aleksandar Jovanovic, Johann Willeit, Ralph L. Sacco, Oscar H. Franco, Radovan Hojs, Heiko Uthoff, Bo Hedblad, Hyun Woong Park, Carmen Z. Suarez, Dong Zhao, Pierre Ducimetiere, Kuo-Liong Chien, Jackie F. Price, Göran Bergström, Jussi Kauhanen, Elena Tremoli, Marcus Dörr, Gerald Berenson, Aikaterini Papagianni, Anna Kablak-Ziembicka, Kazuo Kitagawa, Jaqueline M. Dekker, Radojica Stolic, Joseph F. Polak, Matthias Sitzer, Horst Bickel, Tatjana Rundek, Albert Hofman, Robert Ekart, Beat Frauchiger, Samuela Castelnuovo, Maria Rosvall, Carmine Zoccali, Manuel F. Landecho, Jang-Ho Bae, Rafael Gabriel, Jing Liu, Damiano Baldassarre, Maryam Kavousi
2017	—	`conf`	GP-Unet: Lesion Detection from Weak Labels with a 3D Regression Network. MICCAI (3) Florian Dubost, Gerda Bortsova, Hieab Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
2017	J	`jnl`	GP-Unet: Lesion Detection from Weak Labels with a 3D Regression Network. CoRR Florian Dubost, Gerda Bortsova, Hieab Adams, Mohammad Arfan Ikram, Wiro J. Niessen, Meike W. Vernooij, Marleen de Bruijne
2017	—	`conf`	Heritability of connectivity and disconnectivity of the brain in a population-based study. ISBI Carolyn D. Langen, Gennady V. Roshchupkin, Hieab H. Adams, Marius de Groot, Frans Vos, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen
2017	—	`conf`	The structural disconnectome: A pathology-sensitive extension of the structural connectome. ISBI Carolyn D. Langen, Meike W. Vernooij, Lotte G. M. Cremers, Wyke Huizinga, Marius de Groot, Mohammad Arfan Ikram, Tonya White, Wiro J. Niessen
2017	J	`jnl`	Transfer Learning by Asymmetric Image Weighting for Segmentation across Scanners. CoRR Veronika Cheplygina, Annegreet van Opbroek, Mohammad Arfan Ikram, Meike W. Vernooij, Marleen de Bruijne
2016	—	`conf`	Asymmetric similarity-weighted ensembles for image segmentation. ISBI Veronika Cheplygina, Annegreet van Opbroek, Mohammad Arfan Ikram, Meike W. Vernooij, Marleen de Bruijne
2016	—	`conf`	Modeling the brain morphology distribution in the general aging population. Biomedical Applications in Molecular, Structural, and Functional Imaging Wyke Huizinga, Dirk H. J. Poot, Gennady V. Roshchupkin, Esther E. Bron, Mohammad Arfan Ikram, Meike W. Vernooij, Daniel Rueckert, Wiro J. Niessen, Stefan Klein
2015	J	`jnl`	Transfer Learning Improves Supervised Image Segmentation Across Imaging Protocols. IEEE Trans. Medical Imaging Annegreet van Opbroek, Mohammad Arfan Ikram, Meike W. Vernooij, Marleen de Bruijne
2015	J	`jnl`	Weighting training images by maximizing distribution similarity for supervised segmentation across scanners. Medical Image Anal. Annegreet van Opbroek, Meike W. Vernooij, Mohammad Arfan Ikram, Marleen de Bruijne
2013	—	`conf`	A Transfer-Learning Approach to Image Segmentation Across Scanners by Maximizing Distribution Similarity. MLMI Annegreet van Opbroek, Mohammad Arfan Ikram, Meike W. Vernooij, Marleen de Bruijne
2013	J	`jnl`	Improving alignment in Tract-based spatial statistics: Evaluation and optimization of image registration. NeuroImage Marius de Groot, Meike W. Vernooij, Stefan Klein, Mohammad Arfan Ikram, Frans M. Vos, Stephen M. Smith, Wiro J. Niessen, Jesper L. R. Andersson
2013	B	`conf`	Local appearance features for robust MRI brain structure segmentation across scanning protocols. Image Processing Hakim C. Achterberg, Dirk H. J. Poot, Fedde van der Lijn, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen, Marleen de Bruijne
2012	—	`conf`	A computer aided detection system for cerebral microbleeds in brain MRI. ISBI Babak Ghafaryasl, Fedde van der Lijn, Marielle Poels, Henri A. Vrooman, Mohammad Arfan Ikram, Wiro J. Niessen, Aad van der Lugt, Meike W. Vernooij, Marleen de Bruijne
2012	J	`jnl`	Automated measurement of local white matter lesion volume. NeuroImage Fedde van der Lijn, Benjamin F. J. Verhaaren, Mohammad Arfan Ikram, Stefan Klein, Marleen de Bruijne, Henri A. Vrooman, Meike W. Vernooij, Alexander Hammers, Daniel Rueckert, Aad van der Lugt, Monique M. B. Breteler, Wiro J. Niessen
2012	—	`conf`	Quantitative imaging biomarkers in neurologic disease: Population study perspective. ISBI Wiro J. Niessen, Henri A. Vrooman, Renske de Boer, Fedde van der Lijn, Hakim C. Achterberg, Marcel Koek, Stefan Klein, Aad van der Lugt, Marleen de Bruijne, Mohammad Arfan Ikram, Meike W. Vernooij
2012	—	`conf`	Supervised Image Segmentation across Scanner Protocols: A Transfer Learning Approach. MLMI Annegreet van Opbroek, Mohammad Arfan Ikram, Meike W. Vernooij, Marleen de Bruijne
2011	—	`conf`	Improved Tissue Segmentation by Including an MR Acquisition Model. MBIA Dirk H. J. Poot, Marleen de Bruijne, Meike W. Vernooij, Mohammad Arfan Ikram, Wiro J. Niessen
2011	J	`jnl`	Statistical analysis of minimum cost path based structural brain connectivity. NeuroImage Renske de Boer, Michiel Schaap, Fedde van der Lijn, Henri A. Vrooman, Marius de Groot, Aad van der Lugt, Mohammad Arfan Ikram, Meike W. Vernooij, Monique M. B. Breteler, Wiro J. Niessen
2010	J	`jnl`	Accuracy and reproducibility study of automatic MRI brain tissue segmentation methods. NeuroImage Renske de Boer, Henri A. Vrooman, Mohammad Arfan Ikram, Meike W. Vernooij, Monique M. B. Breteler, Aad van der Lugt, Wiro J. Niessen
2010	—	`conf`	Statistical Analysis of Structural Brain Connectivity. MICCAI (2) Renske de Boer, Michiel Schaap, Fedde van der Lijn, Henri A. Vrooman, Marius de Groot, Meike W. Vernooij, Mohammad Arfan Ikram, Evert F. S. van Velsen, Aad van der Lugt, Monique M. B. Breteler
2009	J	`jnl`	White matter lesion extension to automatic brain tissue segmentation on MRI. NeuroImage Renske de Boer, Henri A. Vrooman, Fedde van der Lijn, Meike W. Vernooij, Mohammad Arfan Ikram, Aad van der Lugt, Monique M. B. Breteler, Wiro J. Niessen
2008	J	`jnl`	White matter atrophy and lesion formation explain the loss of structural integrity of white matter in aging. NeuroImage Meike W. Vernooij, Marius de Groot, Aad van der Lugt, Mohammad Arfan Ikram, Gabriel P. Krestin, Albert Hofman, Wiro J. Niessen, Monique M. B. Breteler
2007	B	`conf`	Automated localization of periventricular and subcortical white matter lesions. Image Processing Fedde van der Lijn, Meike W. Vernooij, Mohammad Arfan Ikram, Henri A. Vrooman, Daniel Rueckert, Alexander Hammers, Monique M. B. Breteler, Wiro J. Niessen
2007	—	`conf`	Automatic Segmentation of Brain Tissue Andwhitematter Lesions in MRI. ISBI Renske de Boer, Fedde van der Lijn, Henri A. Vrooman, Meike W. Vernooij, Mohammad Arfan Ikram, Monique M. B. Breteler, Wiro J. Niessen
2007	J	`jnl`	Multi-spectral brain tissue segmentation using automatically trained k-Nearest-Neighbor classification. NeuroImage Henri A. Vrooman, Chris A. Cocosco, Fedde van der Lijn, Rik Stokking, Mohammad Arfan Ikram, Meike W. Vernooij, Monique M. B. Breteler, Wiro J. Niessen
2006	B	`conf`	kNN-based multi-spectral MRI brain tissue classification: manual training versus automated atlas-based training. Image Processing Henri A. Vrooman, Chris A. Cocosco, Rik Stokking, Mohammad Arfan Ikram, Meike W. Vernooij, Monique M. B. Breteler, Wiro J. Niessen