Mohammad-Hadi Foroughmand-Araabi

16 papers Journal 13Unranked 3
YearRankTypeTitle / Venue / Authors
2024 J jnl
Weighted centroid trees: a general approach to summarize phylogenies in single-labeled tumor mutation tree inference.
Bioinform.
Hamed Vasei, Mohammad-Hadi Foroughmand-Araabi, Amir Daneshgar
2023 J jnl
An Approximation Algorithm for Ancestral Maximum-Likelihood and Phylogeography Inference Problems under Time Reversible Markov Evolutionary Models.
CoRR
Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Kasra Alishahi
2022 J jnl
Mean isoperimetry with control on outliers: Exact and approximation algorithms.
Theor. Comput. Sci.
Morteza Alimi, Amir Daneshgar, Mohammad-Hadi Foroughmand-Araabi
2022 J jnl
Scelestial: Fast and accurate single-cell lineage tree inference based on a Steiner tree approximation algorithm.
PLoS Comput. Biol.
Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Alice C. McHardy
2021 J jnl
Abstract Geometrical Computation 10: An Intrinsically Universal Family of Signal Machines.
ACM Trans. Comput. Theory
Florent Becker, Tom Besson, Jérôme Durand-Lose, Aurélien Emmanuel, Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Shahrzad Heydarshahi
2021 J jnl
Conifer: clonal tree inference for tumor heterogeneity with single-cell and bulk sequencing data.
BMC Bioinform.
Leila Baghaarabani, Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi, Seyed Peyman Shariatpanahi, Bahram Goliaei
2020 J jnl
A novel pattern matching algorithm for genomic patterns related to protein motifs.
J. Bioinform. Comput. Biol.
Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Bahram Goliaei
2018 J jnl
An Intrinsically Universal Family of Signal Machines.
CoRR
Florent Becker, Jérôme Durand-Lose, Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei
2018 J jnl
An O(log
CoRR
Morteza Alimi, Amir Daneshgar, Mohammad-Hadi Foroughmand-Araabi
2018 J jnl
Modeling the probability distribution of the bacterial burst size via a game-theoretic approach.
J. Bioinform. Comput. Biol.
Seyed Amir Malekpour, Parsa Pakzad, Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Ruzbeh Tusserkani, Bahram Goliaei, Mehdi Sadeghi
2017 J jnl
Computational Complexity of Wavelength-Based Machine with Slightly Interacting Sets.
Int. J. Unconv. Comput.
Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi
2015 J jnl
Codon usage and protein sequence pattern dependency in different organisms: A Bioinformatics approach.
J. Bioinform. Comput. Biol.
Mohammad-Hadi Foroughmand-Araabi, Bahram Goliaei, Kasra Alishahi, Mehdi Sadeghi, Sama Goliaei
2014 — conf
Global Topology of Codon Usage Equality Networks of Escherichia Coli Essential Genes.
IWBBIO
Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Bahram Goliaei
2014 J jnl
On the complexity of nonuniform wavelength-based machine.
Nat. Comput.
Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi
2013 — conf
Light Ray Concentration Reduces the Complexity of the Wavelength-Based Machine on PSPACE Languages.
UCNC
Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi
2012 — conf
Lower Bounds on the Complexity of the Wavelength-Based Machine.
UCNC
Sama Goliaei, Mohammad-Hadi Foroughmand-Araabi