Mirza Faisal Beg

68 papers A 1B 4C 1Journal 45Unranked 17

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Automated Retinal Layer and Fluid Segmentation and Cross-sectional Analysis using Spectral Domain Optical Coherence Tomography Images for Diabetic Retinopathy. CoRR S. Chen, Da Ma, M. Raviselvan, S. Sundaramoorthy, Karteek Popuri, Myeong Jin Ju, Marinko Sarunic, D. Ratra, Mirza Faisal Beg
2024	J	`jnl`	Automated Body Composition Analysis Using DAFS Express on 2D MRI Slices at L3 Vertebral Level. CoRR Varun Akella, Razeyeh Bagherinasab, Jia Ming Li, Long Nguyen, Vincent Tze Yang Chow, Hyunwoo Lee, Karteek Popuri, Mirza Faisal Beg
2024	J	`jnl`	Dynamic Survival Prediction Using Sparse Longitudinal Images via Multi-Dimensional Functional Principal Component Analysis. J. Comput. Graph. Stat. Haolun Shi, Shu Jiang, Da Ma, Mirza Faisal Beg, Jiguo Cao
2023	J	`jnl`	Neuroimaging feature extraction using a neural network classifier for imaging genetics. BMC Bioinform. Cédric Beaulac, Sidi Wu, Erin Gibson, Michelle F. Miranda, Jiguo Cao, Leno Rocha, Mirza Faisal Beg, Farouk S. Nathoo
2023	J	`jnl`	Segmentation-guided domain adaptation and data harmonization of multi-device retinal optical coherence tomography using cycle-consistent generative adversarial networks. Comput. Biol. Medicine Shuo Chen, Da Ma, Sieun Lee, Timothy T. L. Yu, Gavin Xu, Donghuan Lu, Karteek Popuri, Myeong Jin Ju, Marinko V. Sarunic, Mirza Faisal Beg
2023	J	`jnl`	Spectral Bandwidth Recovery of Optical Coherence Tomography Images using Deep Learning. CoRR Timothy T. L. Yu, Da Ma, Jayden Cole, Myeong Jin Ju, Mirza Faisal Beg, Marinko V. Sarunic
2022	J	`jnl`	3D hemisphere-based convolutional neural network for whole-brain MRI segmentation. Comput. Medical Imaging Graph. Evangeline Yee, Da Ma, Karteek Popuri, Shuo Chen, Hyunwoo Lee, Vincent Chow, Cydney Ma, Lei Wang, Mirza Faisal Beg
2022	J	`jnl`	Clinical explainable differential diagnosis of polypoidal choroidal vasculopathy and age-related macular degeneration using deep learning. Comput. Biol. Medicine Da Ma, Meenakshi Kumar, Vikas Khetan, Parveen Sen, Muna Bhende, Shuo Chen, Timothy T. L. Yu, Sieun Lee, Eduardo V. Navajas, Joanne A. Matsubara, Myeong Jin Ju, Marinko V. Sarunic, Rajiv Raman, Mirza Faisal Beg
2022	J	`jnl`	Investigating the temporal pattern of neuroimaging-based brain age estimation as a biomarker for Alzheimer's Disease related neurodegeneration. NeuroImage Alexei Taylor, Fengqing (Zoe) Zhang, Xin Niu, Ashley Heywood, Jane Stocks, Gangyi Feng, Karteek Popuri, Mirza Faisal Beg, Lei Wang
2022	J	`jnl`	Machine Learning Based Multimodal Neuroimaging Genomics Dementia Score for Predicting Future Conversion to Alzheimer's Disease. CoRR Ghazal Mirabnahrazam, Da Ma, Sieun Lee, Karteek Popuri, Hyunwoo Lee, Jiguo Cao, Lei Wang, James E. Galvin, Mirza Faisal Beg, Alzheimer's Disease Neuroimaging Initiative
2022	J	`jnl`	Neuroimaging Feature Extraction using a Neural Network Classifier for Imaging Genetics. CoRR Cédric Beaulac, Sidi Wu, Erin Gibson, Michelle F. Miranda, Jiguo Cao, Leno Rocha, Mirza Faisal Beg, Farouk S. Nathoo
2022	J	`jnl`	Predicting Time-to-conversion for Dementia of Alzheimer's Type using Multi-modal Deep Survival Analysis. CoRR Ghazal Mirabnahrazam, Da Ma, Cédric Beaulac, Sieun Lee, Karteek Popuri, Hyunwoo Lee, Jiguo Cao, James E. Galvin, Lei Wang, Mirza Faisal Beg, Alzheimer's Disease Neuroimaging Initiative
2022	J	`jnl`	Segmentation-guided Domain Adaptation and Data Harmonization of Multi-device Retinal Optical Coherence Tomography using Cycle-Consistent Generative Adversarial Networks. CoRR Shuo Chen, Da Ma, Sieun Lee, Timothy T. L. Yu, Gavin Xu, Donghuan Lu, Karteek Popuri, Myeong Jin Ju, Marinko V. Sarunic, Mirza Faisal Beg
2022	J	`jnl`	Two-Dimensional Functional Principal Component Analysis for Image Feature Extraction. J. Comput. Graph. Stat. Haolun Shi, Yuping Yang, Liangliang Wang, Da Ma, Mirza Faisal Beg, Jian Pei, Jiguo Cao
2021	J	`jnl`	Comprehensive Validation of Automated Whole Body Skeletal Muscle, Adipose Tissue, and Bone Segmentation from 3D CT images for Body Composition Analysis: Towards Extended Body Composition. CoRR Da Ma, Vincent Chow, Karteek Popuri, Mirza Faisal Beg
2021	J	`jnl`	Differential Diagnosis of Frontotemporal Dementia and Alzheimer's Disease using Generative Adversarial Network. CoRR Da Ma, Donghuan Lu, Karteek Popuri, Mirza Faisal Beg
2021	J	`jnl`	Domain Adaptation via CycleGAN for Retina Segmentation in Optical Coherence Tomography. CoRR Ricky Chen, Timothy T. L. Yu, Gavin Xu, Da Ma, Marinko V. Sarunic, Mirza Faisal Beg
2021	J	`jnl`	LF-UNet - A novel anatomical-aware dual-branch cascaded deep neural network for segmentation of retinal layers and fluid from optical coherence tomography images. Comput. Medical Imaging Graph. Da Ma, Donghuan Lu, Shuo Chen, Morgan Heisler, Setareh Dabiri, Sieun Lee, Hyunwoo Lee, Gavin Weiguang Ding, Marinko V. Sarunic, Mirza Faisal Beg
2021	C	`conf`	Spectral Bandwidth Recovery of Optical Coherence Tomography Images using Deep Learning. ISPA Timothy T. L. Yu, Da Ma, Jayden Cole, MyeongJin Ju, Mirza Faisal Beg, Marinko V. Sarunic
2020	—	`conf`	Cascade Dual-branch Deep Neural Networks for Retinal Layer and fluid Segmentation of Optical Coherence Tomography Incorporating Relative Positional Map. MIDL Da Ma, Donghuan Lu, Morgan Heisler, Setareh Dabiri, Sieun Lee, Gavin Weiguang Ding, Marinko V. Sarunic, Mirza Faisal Beg
2020	J	`jnl`	Deep learning method for localization and segmentation of abdominal CT. Comput. Medical Imaging Graph. Setareh Dabiri, Karteek Popuri, Cydney Ma, Vincent Chow, Elizabeth M. Cespedes Feliciano, Bette J. Caan, Vickie E. Baracos, Mirza Faisal Beg
2020	J	`jnl`	Microvasculature Segmentation and Inter-capillary Area Quantification of the Deep Vascular Complex using Transfer Learning. CoRR Julian Lo, Morgan Heisler, Vinicius Vanzan, Sonja Karst, Ivana Zadro Matovinovic, Sven Loncaric, Eduardo V. Navajas, Mirza Faisal Beg, Marinko V. Sarunic
2020	J	`jnl`	Substantially thinner internal granular layer and reduced molecular layer surface in the cerebellar cortex of the Tc1 mouse model of down syndrome - a comprehensive morphometric analysis with active staining contrast-enhanced MRI. NeuroImage Da Ma, Manuel Jorge Cardoso, Maria A. Zuluaga, Marc Modat, Nick M. Powell, Frances K. Wiseman, Jon O. Cleary, Benjamin Sinclair, Ian F. Harrison, Bernard Siow, Karteek Popuri, Sieun Lee, Joanne A. Matsubara, Marinko V. Sarunic, Mirza Faisal Beg, Victor L. J. Tybulewicz, Elizabeth M. C. Fisher, Mark F. Lythgoe, Sébastien Ourselin
2019	J	`jnl`	Cascaded Deep Neural Networks for Retinal Layer Segmentation of Optical Coherence Tomography with Fluid Presence. CoRR Donghuan Lu, Morgan Heisler, Da Ma, Setareh Dabiri, Sieun Lee, Gavin Weiguang Ding, Marinko V. Sarunic, Mirza Faisal Beg
2019	J	`jnl`	Deep learning vessel segmentation and quantification of the foveal avascular zone using commercial and prototype OCT-A platforms. CoRR Morgan Heisler, Forson Chan, Zaid Mammo, Chandrakumar Balaratnasingam, Pavle Prentasic, Gavin Docherty, MyeongJin Ju, Sanjeeva Rajapakse, Sieun Lee, Andrew B. Merkur, Andrew W. Kirker, David A. Albiani, David Maberley, K. Bailey Freund, Mirza Faisal Beg, Sven Loncaric, Marinko V. Sarunic, Eduardo V. Navajas
2019	J	`jnl`	Deep-learning based multiclass retinal fluid segmentation and detection in optical coherence tomography images using a fully convolutional neural network. Medical Image Anal. Donghuan Lu, Morgan Heisler, Sieun Lee, Gavin Weiguang Ding, Eduardo Navajas, Marinko V. Sarunic, Mirza Faisal Beg
2019	J	`jnl`	Muscle segmentation in axial computed tomography (CT) images at the lumbar (L3) and thoracic (T4) levels for body composition analysis. Comput. Medical Imaging Graph. Setareh Dabiri, Karteek Popuri, Elizabeth M. Cespedes Feliciano, Bette J. Caan, Vickie E. Baracos, Mirza Faisal Beg
2019	J	`jnl`	RETOUCH: The Retinal OCT Fluid Detection and Segmentation Benchmark and Challenge. IEEE Trans. Medical Imaging Hrvoje Bogunovic, Freerk G. Venhuizen, Sophie Klimscha, Stefanos Apostolopoulos, Alireza Bab-Hadiashar, Ulas Bagci, Mirza Faisal Beg, Loza Bekalo, Qiang Chen, Carlos Ciller, Karthik Gopinath, Amirali K. Gostar, Kiwan Jeon, Zexuan Ji, Sung Ho Kang, Dara D. Koozekanani, Donghuan Lu, Dustin Morley, Keshab K. Parhi, Hyoung Suk Park, Abdolreza Rashno, Marinko Sarunic, Saad Shaikh, Jayanthi Sivaswamy, Ruwan B. Tennakoon, Shivin Yadav, Sandro De Zanet, Sebastian M. Waldstein, Bianca S. Gerendas, Caroline Klaver, Clara I. Sánchez, Ursula Schmidt-Erfurth
2018	J	`jnl`	Multiscale deep neural network based analysis of FDG-PET images for the early diagnosis of Alzheimer's disease. Medical Image Anal. Donghuan Lu, Karteek Popuri, Gavin Weiguang Ding, Rakesh Balachandar, Mirza Faisal Beg
2017	J	`jnl`	Atlas-based shape analysis and classification of retinal optical coherence tomography images using the functional shape (fshape) framework. Medical Image Anal. Sieun Lee, Nicolas Charon, Benjamin Charlier, Karteek Popuri, Evgeniy Lebed, Marinko V. Sarunic, Alain Trouvé, Mirza Faisal Beg
2017	—	`conf`	Brain geometry persistent homology marker for Parkinson's disease. ISBI Amanmeet Garg, Donghuan Lu, Karteek Popuri, Mirza Faisal Beg
2017	J	`jnl`	Development and validation of a novel dementia of Alzheimer's type (DAT) score based on metabolism FDG-PET imaging. CoRR Karteek Popuri, Rakesh Balachandar, Kathryn I. Alpert, Donghuan Lu, Mahadev Bhalla, Ian Mackenzie, Robin Ging-Yuek Hsiung, Lei Wang, Mirza Faisal Beg
2017	J	`jnl`	Multimodal and Multiscale Deep Neural Networks for the Early Diagnosis of Alzheimer's Disease using structural MR and FDG-PET images. CoRR Donghuan Lu, Karteek Popuri, Gavin Weiguang Ding, Rakesh Balachandar, Mirza Faisal Beg
2017	—	`conf`	Multiple instance learning for age-related macular degeneration diagnosis in optical coherence tomography images. ISBI Donghuan Lu, Gavin Weiguang Ding, Andrew B. Merkur, Marinko V. Sarunic, Mirza Faisal Beg
2017	J	`jnl`	Retinal Fluid Segmentation and Detection in Optical Coherence Tomography Images using Fully Convolutional Neural Network. CoRR Donghuan Lu, Morgan Heisler, Sieun Lee, Gavin Weiguang Ding, Marinko V. Sarunic, Mirza Faisal Beg
2017	—	`conf`	Topology of Surface Displacement Shape Feature in Subcortical Structures. GRAIL/MFCA/MICGen@MICCAI Amanmeet Garg, Donghuan Lu, Karteek Popuri, Mirza Faisal Beg
2016	—	`conf`	Surface displacement based shape analysis of central brain structures in preterm-born children. Biomedical Applications in Molecular, Structural, and Functional Imaging Amanmeet Garg, Ruth E. Grunau, Karteek Popuri, Steven P. Miller, Bruce Bjornson, Kenneth J. Poskitt, Mirza Faisal Beg
2015	J	`jnl`	Exact Surface Registration of Retinal Surfaces From 3-D Optical Coherence Tomography Images. IEEE Trans. Biomed. Eng. Sieun Lee, Evgeniy Lebed, Marinko V. Sarunic, Mirza Faisal Beg
2014	J	`jnl`	Automatic Cycle Averaging for Denoising Approximately Periodic Spatiotemporal Signals. IEEE Trans. Medical Imaging Gavin Weiguang Ding, Eric Lin, Amanda Ribeiro, Marinko V. Sarunic, Glen F. Tibbits, Mirza Faisal Beg
2013	—	`conf`	Automatic detection of subretinal fluid and sub-retinal pigment epithelium fluid in optical coherence tomography images. EMBC Gavin Weiguang Ding, Mei Young, Serge Bourgault, Sieun Lee, David A. Albiani, Andrew W. Kirker, Farzin Forooghian, Marinko V. Sarunic, Andrew B. Merkur, Mirza Faisal Beg
2013	J	`jnl`	Multistructure Large Deformation Diffeomorphic Brain Registration. IEEE Trans. Biomed. Eng. Ali R. Khan, Lei Wang, Mirza Faisal Beg
2013	J	`jnl`	Novel Surface-Smoothing Based Local Gyrification Index. IEEE Trans. Medical Imaging Evgeniy Lebed, Claudia Jacova, Lei Wang, Mirza Faisal Beg
2013	—	`conf`	On identification of sinoatrial node in zebrafish heart based on functional time series from optical mapping. EMBC Gavin Weiguang Ding, Eric Lin, Amanda Ribeiro, Marinko V. Sarunic, Glen F. Tibbits, Mirza Faisal Beg
2013	J	`jnl`	Quantitative Evaluation of Transform Domains for Compressive Sampling-Based Recovery of Sparsely Sampled Volumetric OCT Images. IEEE Trans. Biomed. Eng. Andy Bo Wu, Evgeniy Lebed, Marinko Sarunic, Mirza Faisal Beg
2013	—	`conf`	Thickness NETwork (ThickNet) Features for the Detection of Prodromal AD. MLMI Pradeep Reddy Raamana, Lei Wang, Mirza Faisal Beg
2012	J	`jnl`	Automated detection of amnestic mild cognitive impairment in community-dwelling elderly adults: A combined spatial atrophy and white matter alteration approach. NeuroImage Yue Cui, Wei Wen, Darren M. Lipnicki, Mirza Faisal Beg, Jesse S. Jin, Suhuai Luo, Wanlin Zhu, Nicole A. Kochan, Simone Reppermund, Lin Zhuang, Pradeep Reddy Raamana, Tao Liu, Julian N. Trollor, Lei Wang, Henry Brodaty, Perminder S. Sachdev
2011	—	`conf`	Hippocampal Surface Mapping of Genetic Risk Factors in AD via Sparse Learning Models. MICCAI (2) Jing Wan, Sungeun Kim, Mark Inlow, Kwangsik Nho, Shanker Swaminathan, Shannon L. Risacher, Shiaofen Fang, Michael W. Weiner, Mirza Faisal Beg, Lei Wang, Andrew J. Saykin, Li Shen
2011	—	`conf`	Momentum-based morphometric analysis with application to Parkinson's disease. Image-Guided Procedures Jingyun Chen, Ali R. Khan, Martin J. McKeown, Mirza Faisal Beg
2011	J	`jnl`	Optimal weights for local multi-atlas fusion using supervised learning and dynamic information (SuperDyn): Validation on hippocampus segmentation. NeuroImage Ali R. Khan, Nicolas Cherbuin, Wei Wen, Kaarin Anstey, Perminder S. Sachdev, Mirza Faisal Beg
2011	J	`jnl`	Quantization and analysis of hippocampal morphometric changes due to dementia of Alzheimer type using metric distances based on large deformation diffeomorphic metric mapping. Comput. Medical Imaging Graph. Elvan Ceyhan, Mirza Faisal Beg, Can Ceritoglu, Lei Wang, John C. Morris, John G. Csernansky, Michael I. Miller, J. Tilak Ratnanather
2010	J	`jnl`	Optic Nerve Head Registration Via Hemispherical Surface and Volume Registration. IEEE Trans. Biomed. Eng. Eli Gibson, Mei Young, Marinko Sarunic, Mirza Faisal Beg
2009	—	`conf`	A Combined Surface And VOlumetric Registration (SAVOR) Framework to Study Cortical Biomarkers and Volumetric Imaging Data. MICCAI (1) Eli Gibson, Ali R. Khan, Mirza Faisal Beg
2009	J	`jnl`	External landmark and head-shape-based functional data normalization. Comput. Medical Imaging Graph. Mirza Faisal Beg, Stephen Wong, Ali R. Khan, Teresa Cheung, Naznin Virji-Babul, Anthony T. Herdman
2009	B	`conf`	Freesurfer-initialized large deformation diffeomorphic metric mapping with application to Parkinson's disease. Image Processing Jingyun Chen, Samantha J. Palmer, Ali R. Khan, Martin J. McKeown, Mirza Faisal Beg
2009	—	`conf`	Robust Atlas-Based Brain Segmentation Using Multi-structure Confidence-Weighted Registration. MICCAI (1) Ali R. Khan, Moo K. Chung, Mirza Faisal Beg
2008	J	`jnl`	FreeSurfer-initiated fully-automated subcortical brain segmentation in MRI using Large Deformation Diffeomorphic Metric Mapping. NeuroImage Ali R. Khan, Lei Wang, Mirza Faisal Beg
2008	—	`conf`	Representation of time-varying shapes in the large deformation diffeomorphic framework. ISBI Ali R. Khan, Mirza Faisal Beg
2008	—	`conf`	Two novel methods for computing the 3D cardiac midwall. ISBI Ryan Dickie, Mirza Faisal Beg
2007	B	`conf`	Consistent realignment of 3D diffusion tensor MRI eigenvectors. Image Processing Mirza Faisal Beg, Ryan Dickie, Gregory Golds, Laurent Younes
2007	J	`jnl`	Large Deformation Diffeomorphism and Momentum Based Hippocampal Shape Discrimination in Dementia of the Alzheimer type. IEEE Trans. Medical Imaging Lei Wang, Mirza Faisal Beg, J. Tilak Ratnanather, Can Ceritoglu, Laurent Younes, John C. Morris, John G. Csernansky, Michael I. Miller
2007	J	`jnl`	Symmetric Data Attachment Terms for Large Deformation Image Registration. IEEE Trans. Medical Imaging Mirza Faisal Beg, Ali R. Khan
2006	—	`conf`	Computing an average anatomical atlas using LDDMM and geodesic shooting. ISBI Mirza Faisal Beg, Ali R. Khan
2005	B	`conf`	Biomedical Informatics Research Network: Integrating Multi-Site Neuroimaging Data Acquisition, Data Sharing and Brain Morphometric Processing. CBMS Jorge Jovicich, Mirza Faisal Beg, Steve Pieper, Carey E. Priebe, Michael I. Miller, Randy L. Buckner, Bruce R. Rosen
2005	J	`jnl`	Computing Large Deformation Metric Mappings via Geodesic Flows of Diffeomorphisms. Int. J. Comput. Vis. Mirza Faisal Beg, Michael I. Miller, Alain Trouvé, Laurent Younes
2005	B	`conf`	Computing the thickness of the ventricular heart wall from 3D MRI images. Image Processing Gregory Golds, Mirza Faisal Beg
2005	A	`conf`	Semi-automated Basal Ganglia Segmentation Using Large Deformation Diffeomorphic Metric Mapping. MICCAI Ali R. Khan, Elizabeth H. Aylward, Patrick Barta, Michael I. Miller, Mirza Faisal Beg
2003	—	`conf`	The Euler-Lagrange Equation for Interpolating Sequence of Landmark Datasets. MICCAI (2) Mirza Faisal Beg, Michael I. Miller, Alain Trouvé, Laurent Younes
2002	—	`conf`	Computational anatomy: computing metrics on anatomical shapes. ISBI Mirza Faisal Beg, Michael I. Miller, Alain Trouvé, Laurent Younes