Minoru Kanehisa

92 papers A* 1A 1B 3C 2Journal 74Unranked 10
YearRankTypeTitle / Venue / Authors
2023 J jnl
KEGG for taxonomy-based analysis of pathways and genomes.
Nucleic Acids Res.
Minoru Kanehisa, Miho Furumichi, Yoko Sato, Masayuki Kawashima, Mari Ishiguro-Watanabe
2021 J jnl
KEGG: integrating viruses and cellular organisms.
Nucleic Acids Res.
Minoru Kanehisa, Miho Furumichi, Yoko Sato, Mari Ishiguro-Watanabe, Mao Tanabe
2020 J jnl
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold.
Bioinform.
Takuya Aramaki, Romain Blanc-Mathieu, Hisashi Endo, Koichi Ohkubo, Minoru Kanehisa, Susumu Goto, Hiroyuki Ogata
2019 J jnl
New approach for understanding genome variations in KEGG.
Nucleic Acids Res.
Minoru Kanehisa, Yoko Sato, Miho Furumichi, Kanae Morishima, Mao Tanabe
2017 J jnl
KEGG: new perspectives on genomes, pathways, diseases and drugs.
Nucleic Acids Res.
Minoru Kanehisa, Miho Furumichi, Mao Tanabe, Yoko Sato, Kanae Morishima
2016 J jnl
Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs.
J. Chem. Inf. Model.
Yuki Moriya, Takuji Yamada, Shujiro Okuda, Zenichi Nakagawa, Masaaki Kotera, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
2016 J jnl
KEGG as a reference resource for gene and protein annotation.
Nucleic Acids Res.
Minoru Kanehisa, Yoko Sato, Masayuki Kawashima, Miho Furumichi, Mao Tanabe
2014 J jnl
DINIES: drug-target interaction network inference engine based on supervised analysis.
Nucleic Acids Res.
Yoshihiro Yamanishi, Masaaki Kotera, Yuki Moriya, Ryusuke Sawada, Minoru Kanehisa, Susumu Goto
2014 J jnl
Data, information, knowledge and principle: back to metabolism in KEGG.
Nucleic Acids Res.
Minoru Kanehisa, Susumu Goto, Yoko Sato, Masayuki Kawashima, Miho Furumichi, Mao Tanabe
2014 J jnl
PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list.
J. Bioinform. Comput. Biol.
Masaaki Kotera, Yosuke Nishimura, Zenichi Nakagawa, Ai Muto, Yuki Moriya, Shinobu Okamoto, Shuichi Kawashima, Toshiaki Katayama, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
2013 J jnl
Automated interpretation of metabolic capacity from genome and metagenome sequences.
Quant. Biol.
Minoru Kanehisa
2013 J jnl
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics.
BMC Syst. Biol.
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Yuki Moriya, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
2013 J jnl
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.
Nucleic Acids Res.
Akihiro Nakaya, Toshiaki Katayama, Masumi Itoh, Kazushi Hiranuka, Shuichi Kawashima, Yuki Moriya, Shujiro Okuda, Michihiro Tanaka, Toshiaki Tokimatsu, Yoshihiro Yamanishi, Akiyasu C. Yoshizawa, Minoru Kanehisa, Susumu Goto
2013 J jnl
Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions.
J. Chem. Inf. Model.
Ai Muto, Masaaki Kotera, Toshiaki Tokimatsu, Zenichi Nakagawa, Susumu Goto, Minoru Kanehisa
2012 J jnl
GENIES: gene network inference engine based on supervised analysis.
Nucleic Acids Res.
Masaaki Kotera, Yoshihiro Yamanishi, Yuki Moriya, Minoru Kanehisa, Susumu Goto
2012 J jnl
KEGG for integration and interpretation of large-scale molecular data sets.
Nucleic Acids Res.
Minoru Kanehisa, Susumu Goto, Yoko Sato, Miho Furumichi, Mao Tanabe
2012 J jnl
Population Model-Based Inter-Diplotype Similarity Measure for Accurate Diplotype Clustering.
J. Comput. Biol.
Ritsuko Onuki, Ryo Yamada, Rui Yamaguchi, Minoru Kanehisa, Tetsuo Shibuya
2011 J jnl
KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data.
Nucleic Acids Res.
Nozomu Sakurai, Takeshi Ara, Yoshiyuki Ogata, Ryosuke Sano, Takashi Ohno, Kenjiro Sugiyama, Atsushi Hiruta, Kiyoshi Yamazaki, Kentaro Yano, Koh Aoki, Asaph Aharoni, Kazuki Hamada, Koji Yokoyama, Shingo Kawamura, Hirofumi Otsuka, Toshiaki Tokimatsu, Minoru Kanehisa, Hideyuki Suzuki, Kazuki Saito, Daisuke Shibata
2011 J jnl
MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites.
BMC Bioinform.
Masaaki Kotera, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
2011 J jnl
Network-Based Analysis and Characterization of Adverse Drug-Drug Interactions.
J. Chem. Inf. Model.
Masataka Takarabe, Daichi Shigemizu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa
2011 J jnl
iPath2.0: interactive pathway explorer.
Nucleic Acids Res.
Takuji Yamada, Ivica Letunic, Shujiro Okuda, Minoru Kanehisa, Peer Bork
2010 J jnl
Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework.
Bioinform.
Yoshihiro Yamanishi, Masaaki Kotera, Minoru Kanehisa, Susumu Goto
2010 J jnl
KEGG for representation and analysis of molecular networks involving diseases and drugs.
Nucleic Acids Res.
Minoru Kanehisa, Susumu Goto, Miho Furumichi, Mao Tanabe, Mika Hirakawa
2010 J jnl
PathPred: an enzyme-catalyzed metabolic pathway prediction server.
Nucleic Acids Res.
Yuki Moriya, Daichi Shigemizu, Masahiro Hattori, Toshiaki Tokimatsu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa
2010 J jnl
SIMCOMP/SUBCOMP: chemical structure search servers for network analyses.
Nucleic Acids Res.
Masahiro Hattori, Nobuya Tanaka, Minoru Kanehisa, Susumu Goto
2009 J jnl
E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.
Bioinform.
Yoshihiro Yamanishi, Masahiro Hattori, Masaaki Kotera, Susumu Goto, Minoru Kanehisa
2009 J jnl
Extraction and Analysis of Chemical Modification Patterns in Drug Development.
J. Chem. Inf. Model.
Daichi Shigemizu, Michihiro Araki, Shujiro Okuda, Susumu Goto, Minoru Kanehisa
2008 J jnl
A new efficient probabilistic model for mining labeled ordered trees applied to glycobiology.
ACM Trans. Knowl. Discov. Data
Kosuke Hashimoto, Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Minoru Kanehisa, Hiroshi Mamitsuka
2008 J jnl
AAindex: amino acid index database, progress report 2008.
Nucleic Acids Res.
Shuichi Kawashima, Piotr Pokarowski, Maria Pokarowska, Andrzej Kolinski, Toshiaki Katayama, Minoru Kanehisa
2008 J jnl
KEGG Atlas mapping for global analysis of metabolic pathways.
Nucleic Acids Res.
Shujiro Okuda, Takuji Yamada, Masami Hamajima, Masumi Itoh, Toshiaki Katayama, Peer Bork, Susumu Goto, Minoru Kanehisa
2008 B conf
KEGG for Medical and Pharmaceutical Applications.
APBC
Minoru Kanehisa
2008 J jnl
KEGG for linking genomes to life and the environment.
Nucleic Acids Res.
Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi
2008 C conf
Mining significant tree patterns in carbohydrate sugar chains.
ECCB
Kosuke Hashimoto, Ichigaku Takigawa, Motoki Shiga, Minoru Kanehisa, Hiroshi Mamitsuka
2008 A conf
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.
ISMB
Yoshihiro Yamanishi, Michihiro Araki, Alex Gutteridge, Wataru Honda, Minoru Kanehisa
2008 J jnl
varDB: a pathogen-specific sequence database of protein families involved in antigenic variation.
Bioinform.
C. Nelson Hayes, Diego Diez, Nicolas Joannin, Wataru Honda, Minoru Kanehisa, Mats Wahlgren, Craig E. Wheelock, Susumu Goto
2007 — conf
Inference of Protein-Protein Interactions by Using Co-evolutionary Information.
AB
Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
2007 J jnl
KAAS: an automatic genome annotation and pathway reconstruction server.
Nucleic Acids Res.
Yuki Moriya, Masumi Itoh, Shujiro Okuda, Akiyasu C. Yoshizawa, Minoru Kanehisa
2007 J jnl
Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach.
BMC Bioinform.
Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuyoshi Esaki, Minoru Kanehisa
2007 J jnl
Regulation of metabolic networks by small molecule metabolites.
BMC Bioinform.
Alex Gutteridge, Minoru Kanehisa, Susumu Goto
2007 J jnl
Systematic Analysis of Enzyme-Catalyzed Reaction Patterns and Prediction of Microbial Biodegradation Pathways.
J. Chem. Inf. Model.
Mina Oh, Takuji Yamada, Masahiro Hattori, Susumu Goto, Minoru Kanehisa
2007 J jnl
The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs).
Bioinform.
Vachiranee Limviphuvadh, Seigo Tanaka, Susumu Goto, Kunihiro Ueda, Minoru Kanehisa
2007 J jnl
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.
Nucleic Acids Res.
Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Joe Mellor, Bolan Linghu, Minoru Kanehisa, Joshua M. Stuart, Charles DeLisi
2006 B conf
A 6-Approximation Algorithm for Computing Smallest Common AoN-Supertree with Application to the Reconstruction of Glycan Trees.
ISAAC
Kiyoko F. Aoki-Kinoshita, Minoru Kanehisa, Ming-Yang Kao, Xiang-Yang Li, Weizhao Wang
2006 A* conf
A new efficient probabilistic model for mining labeled ordered trees.
KDD
Kosuke Hashimoto, Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Minoru Kanehisa, Hiroshi Mamitsuka
2006 J jnl
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.
Nucleic Acids Res.
Ali Masoudi-Nejad, Koichiro Tonomura, Shuichi Kawashima, Yuki Moriya, Masanori Suzuki, Masumi Itoh, Minoru Kanehisa, Takashi Endo, Susumu Goto
2006 J jnl
Extraction of phylogenetic network modules from the metabolic network.
BMC Bioinform.
Takuji Yamada, Minoru Kanehisa, Susumu Goto
2006 J jnl
From genomics to chemical genomics: new developments in KEGG.
Nucleic Acids Res.
Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, Mika Hirakawa
2006 — conf
Identification of metabolic units induced by environmental signals.
ISMB (Supplement of Bioinformatics)
Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu
2006 J jnl
MIMOX: a web tool for phage display based epitope mapping.
BMC Bioinform.
Jian Huang, Alex Gutteridge, Wataru Honda, Minoru Kanehisa
2006 J jnl
ODB: a database of operons accumulating known operons across multiple genomes.
Nucleic Acids Res.
Shujiro Okuda, Toshiaki Katayama, Shuichi Kawashima, Susumu Goto, Minoru Kanehisa
2006 J jnl
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.
Bioinform.
Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
2006 — conf
ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains.
ISMB (Supplement of Bioinformatics)
Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Hiroshi Mamitsuka, Minoru Kanehisa
2006 J jnl
Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis.
BMC Bioinform.
Jean-Marc Schwartz, Minoru Kanehisa
2005 — conf
A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes.
ECCB/JBI
Jean-Marc Schwartz, Minoru Kanehisa
2005 J jnl
A score matrix to reveal the hidden links in glycans.
Bioinform.
Kiyoko F. Aoki, Hiroshi Mamitsuka, Tatsuya Akutsu, Minoru Kanehisa
2005 J jnl
Fast and accurate database homology search using upper bounds of local alignment scores.
Bioinform.
Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa
2005 J jnl
Prediction of glycan structures from gene expression data based on glycosyltransferase reactions.
Bioinform.
Shin Kawano, Kosuke Hashimoto, Takashi Miyama, Susumu Goto, Minoru Kanehisa
2005 — conf
Supervised enzyme network inference from the integration of genomic data and chemical information.
ISMB (Supplement of Bioinformatics)
Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa
2005 J jnl
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.
Bioinform.
Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh
2005 J jnl
Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models.
J. Bioinform. Comput. Biol.
Yoshinori Tamada, Hideo Bannai, Seiya Imoto, Toshiaki Katayama, Minoru Kanehisa, Satoru Miyano
2004 — conf
Application of a new probabilistic model for recognizing complex patterns in glycans.
ISMB/ECCB (Supplement of Bioinformatics)
Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Minoru Kanehisa, Tatsuya Akutsu, Hiroshi Mamitsuka
2004 J jnl
Clustering under the line graph transformation: application to reaction network.
BMC Bioinform.
Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu
2004 J jnl
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains.
Nucleic Acids Res.
Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, Tatsuya Akutsu, Hiroshi Mamitsuka, Susumu Goto, Minoru Kanehisa
2004 J jnl
Managing and Analyzing Carbohydrate Data.
SIGMOD Rec.
Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka
2004 — conf
Protein network inference from multiple genomic data: a supervised approach.
ISMB/ECCB (Supplement of Bioinformatics)
Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa
2004 J jnl
The KEGG resource for deciphering the genome.
Nucleic Acids Res.
Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori
2003 C conf
Extracting active pathways from gene expression data.
ECCB
Jean-Philippe Vert, Minoru Kanehisa
2003 — conf
Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis.
ISMB (Supplement of Bioinformatics)
Yoshihiro Yamanishi, Jean-Philippe Vert, Akihiro Nakaya, Minoru Kanehisa
2003 J jnl
Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs.
Bioinform.
Keun-Joon Park, Minoru Kanehisa
2002 — conf
Graph-Driven Feature Extraction From Microarray Data Using Diffusion Kernels and Kernel CCA.
NIPS
Jean-Philippe Vert, Minoru Kanehisa
2002 J jnl
LIGAND: database of chemical compounds and reactions in biological pathways.
Nucleic Acids Res.
Susumu Goto, Yasushi Okuno, Masahiro Hattori, Takaaki Nishioka, Minoru Kanehisa
2002 J jnl
The KEGG databases at GenomeNet.
Nucleic Acids Res.
Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya
2002 J jnl
Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags.
Nucleic Acids Res.
Takeshi Kawashima, Shuichi Kawashima, Yuji Kohara, Minoru Kanehisa, Kazuhiro W. Makabe
2000 J jnl
AAindex: Amino Acid index database.
Nucleic Acids Res.
Shuichi Kawashima, Minoru Kanehisa
2000 J jnl
KEGG: Kyoto Encyclopedia of Genes and Genomes.
Nucleic Acids Res.
Minoru Kanehisa, Susumu Goto
2000 J jnl
LIGAND: chemical database of enzyme reactions.
Nucleic Acids Res.
Susumu Goto, Takaaki Nishioka, Minoru Kanehisa
2000 J jnl
MAGEST: MAboya Gene Expression patterns and Sequence Tags.
Nucleic Acids Res.
Takeshi Kawashima, Shuichi Kawashima, Minoru Kanehisa, Hiroki Nishida, Kazuhiro W. Makabe
2000 B conf
Sequence comparison to graph comparison--a new generation of algorithms for network analysis of interacting molecules (abstract only).
RECOMB
Minoru Kanehisa
1999 J jnl
AAindex: Amino Acid Index Database.
Nucleic Acids Res.
Shuichi Kawashima, Hiroyuki Ogata, Minoru Kanehisa
1999 J jnl
KEGG: Kyoto Encyclopedia of Genes and Genomes.
Nucleic Acids Res.
Hiroyuki Ogata, Susumu Goto, Kazushige Sato, Wataru Fujibuchi, Hidemasa Bono, Minoru Kanehisa
1999 J jnl
LIGAND database for enzymes, compounds and reactions.
Nucleic Acids Res.
Susumu Goto, Takaaki Nishioka, Minoru Kanehisa
1999 — ch.
Systematic Detection of Protein Structural Motifs.
Pattern Discovery in Biomolecular Data
Kentaro Tomii, Minoru Kanehisa
1998 J jnl
Grand challenges in bioinformatics.
Bioinform.
Minoru Kanehisa
1998 J jnl
LIGAND: chemical database for enzyme reactions.
Bioinform.
Susumu Goto, Takaaki Nishioka, Minoru Kanehisa
1994 — conf
Development of an integrated Database for Genome Mapping and Nucleotide Sequences.
HICSS (5)
Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa
1993 J jnl
An approach to systematic detection of protein structural motifs.
Comput. Appl. Biosci.
Yo Matsuo, Minoru Kanehisa
1993 J jnl
Multiple sequence alignment by parallel simulated annealing.
Comput. Appl. Biosci.
Masato Ishikawa, Tomoyuki Toya, Masaki Hoshida, Katsumi Nitta, A. Ogiwara, Minoru Kanehisa
1988 J jnl
Discriminant analysis of promoter regions in Escherichia coli sequences.
Comput. Appl. Biosci.
Kotoko Nakata, Minoru Kanehisa, Jacob V. Maizel
1985 J jnl
The GenBank nucleic acid sequence database.
Comput. Appl. Biosci.
Christian Burks, James W. Fickett, W. B. Goad, Minoru Kanehisa, F. I. Lewitter, W. P. Rindone, C. D. Swindell, C. S. Tung, H. S. Bilofsky
1984 J jnl
A relational database system for the maintenance and verification of the Los Alamos sequence library.
Nucleic Acids Res.
Minoru Kanehisa, James W. Fickett, W. B. Goad
1984 J jnl
Computer analysis and structure prediction of nucleic acids and proteins.
Nucleic Acids Res.
Minoru Kanehisa, P. Klein, P. Greif, Charles DeLisi
1984 J jnl
Use of statistical criteria for screening potential homologies in nucleic acid sequences.
Nucleic Acids Res.
Minoru Kanehisa