Mingxiang Teng

20 papers Journal 15Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
qcCHIP: an R package to identify clonal hematopoiesis variants using cohort-specific data characteristics.
Bioinform.
Xiang Liu, Yi-Han Tang, James Blachly, Stephen Edge, Yasminka A. Jakubek, Martin McCarter, Abdul Rafeh Naqash, Kenneth G. Nepple, Afaf Osman, Matthew J. Reilley, Gregory Riedlinger, Bodour Salhia, Bryan P. Schneider, Craig Shriver, Michelle L. Churchman, Robert J. Rounbehler, Jamie K. Teer, Nancy Gillis, Mingxiang Teng
2024 J jnl
An Epigenomic fingerprint of human cancers by landscape interrogation of super enhancers at the constituent level.
PLoS Comput. Biol.
Xiang Liu, Nancy Gillis, Chang Jiang, Anthony McCofie, Timothy I. Shaw, Aik Choon Tan, Bo Zhao, Lixin Wan, Derek R. Duckett, Mingxiang Teng
2024 J jnl
BatchFLEX: feature-level equalization of X-batch.
Bioinform.
Joshua T. Davis, Alyssa N. Obermayer, Alex C. Soupir, Rebecca S. Hesterberg, Thac Duong, Ching-Yao Yang, Ken Phong Dao, Brandon J. Manley, G. Daniel Grass, Dorina Avram, Paulo C. Rodriguez, Brooke L. Fridley, Xiaoqing Yu, Mingxiang Teng, Xuefeng Wang, Timothy I. Shaw
2023 J jnl
PATH-SURVEYOR: pathway level survival enquiry for immuno-oncology and drug repurposing.
BMC Bioinform.
Alyssa N. Obermayer, Darwin Chang, Gabrielle Nobles, Mingxiang Teng, Aik Choon Tan, Xuefeng Wang, Y. Ann Chen, Steven Eschrich, Paulo C. Rodriguez, G. Daniel Grass, Soheil Meshinchi, Ahmad Tarhini, Dung-Tsa Chen, Timothy I. Shaw
2021 J jnl
TIMEx: tumor-immune microenvironment deconvolution web-portal for bulk transcriptomics using pan-cancer scRNA-seq signatures.
Bioinform.
Mengyu Xie, Kyubum Lee, John H. Lockhart, Scott D. Cukras, Rodrigo Carvajal, Amer A. Beg, Elsa R. Flores, Mingxiang Teng, Christine H. Chung, Aik Choon Tan
2019 J jnl
Simulating genetically heterozygous genomes in the tumour tissue according to its clonal evolution history.
Int. J. Comput. Biol. Drug Des.
Yan-Shuo Chu, Mingxiang Teng, Yadong Wang
2018 J jnl
Modeling and correct the GC bias of tumor and normal WGS data for SCNA based tumor subclonal population inferring.
BMC Bioinform.
Yan-Shuo Chu, Mingxiang Teng, Yadong Wang
2017 — conf
Pre-SCNAClonal: Efficient GC bias correction for SCNA based tumor subclonal populations inferring.
BIBM
Yan-Shuo Chu, Mingxiang Teng, Zhenxing Wang, Yongtian Wang, Yadong Wang
2017 — conf
Pysubsim-tree: A package for simulating tumor genomes according to tumor evolution history.
BIBM
Yan-Shuo Chu, Ling Wang, Rongjie Wang, Mingxiang Teng, Yadong Wang
2017 J jnl
WDNfinder: A method for minimum driver node set detection and analysis in directed and weighted biological network.
J. Bioinform. Comput. Biol.
Yan-Shuo Chu, Zhenxing Wang, Rongjie Wang, Ningyi Zhang, Jie Li, Yang Hu, Mingxiang Teng, Yadong Wang
2016 — conf
DMcompress: Dynamic Markov models for bacterial genome compression.
BIBM
Rongjie Wang, Mingxiang Teng, Yang Bai, Tianyi Zang, Yadong Wang
2016 J jnl
rHAT: fast alignment of noisy long reads with regional hashing.
Bioinform.
Bo Liu, Dengfeng Guan, Mingxiang Teng, Yadong Wang
2015 J jnl
Family genome browser: visualizing genomes with pedigree information.
Bioinform.
Liran Juan, Yongzhuang Liu, Yongtian Wang, Mingxiang Teng, Tianyi Zang, Yadong Wang
2014 J jnl
The personal genome browser: visualizing functions of genetic variants.
Nucleic Acids Res.
Liran Juan, Mingxiang Teng, Tianyi Zang, Yafeng Hao, Zhenxing Wang, Chengwu Yan, Yongzhuang Liu, Jie Li, Tianjiao Zhang, Yadong Wang
2012 J jnl
regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions.
Bioinform.
Mingxiang Teng, Shoji Ichikawa, Leah R. Padgett, Yadong Wang, Matthew E. Mort, David N. Cooper, Daniel L. Koller, Tatiana Foroud, Howard J. Edenberg, Michael J. Econs, Yunlong Liu
2011 J jnl
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer.
BMC Syst. Biol.
Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li
2011 — conf
Empirical bayes model comparisons for differential methylation analysis.
GENSiPS
Mingxiang Teng, Yadong Wang, Yunlong Liu, Seongho Kim, Curtis Balch, Kenneth P. Nephew, Lang Li
2010 J jnl
Prioritization of disease microRNAs through a human phenome-microRNAome network.
BMC Syst. Biol.
Qinghua Jiang, Yangyang Hao, Guohua Wang, Liran Juan, Tianjiao Zhang, Mingxiang Teng, Yunlong Liu, Yadong Wang
2009 — conf
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research.
BIBM
Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç
2009 J jnl
miR2Disease: a manually curated database for microRNA deregulation in human disease.
Nucleic Acids Res.
Qinghua Jiang, Yadong Wang, Yangyang Hao, Liran Juan, Mingxiang Teng, Xinjun Zhang, Meimei Li, Guohua Wang, Yunlong Liu