Mingfu Shao

37 papers B 7C 4Journal 23Unranked 2
YearRankTypeTitle / Venue / Authors
2025 B conf
Accurate Detection of Tandem Repeats from Error-Prone Sequences with EquiRep.
RECOMB
Zhezheng Song, Tasfia Zahin, Xiang Li, Mingfu Shao
2025 B conf
An Exact and Fast SAT Formulation for the DCJ Distance.
RECOMB
Aaryan M. Sarnaik, Ke Chen, Austin Diaz, Mingfu Shao
2025 J jnl
Anchorage accurately assembles anchor-flanked synthetic long reads.
Algorithms Mol. Biol.
Xiaofei Carl Zang, Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, Mingfu Shao
2025 J jnl
Efficient seeding for error-prone sequences with SubseqHash2.
Bioinform.
Xiang Li, Ke Chen, Mingfu Shao
2025 C conf
Sequence Similarity Estimation by Random Subsequence Sketching.
WABI
Ke Chen, Vinamratha Pattar, Mingfu Shao
2025 J jnl
Transcriptome assembly at single-cell resolution with Beaver.
Bioinform.
Qian Shi, Qimin Zhang, Mingfu Shao
2024 B conf
Accurate Assembly of Circular RNAs with TERRACE.
RECOMB
Tasfia Zahin, Qian Shi, Xiaofei Carl Zang, Mingfu Shao
2024 J jnl
Accurate assembly of multiple RNA-seq samples with Aletsch.
Bioinform.
Qian Shi, Qimin Zhang, Mingfu Shao
2024 C conf
Anchorage Accurately Assembles Anchor-Flanked Synthetic Long Reads.
WABI
Xiaofei Carl Zang, Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, Mingfu Shao
2024 J jnl
Learning locality-sensitive bucketing functions.
Bioinform.
Xin Yuan, Ke Chen, Xiang Li, Qian Shi, Mingfu Shao
2023 J jnl
Locality-sensitive bucketing functions for the edit distance.
Algorithms Mol. Biol.
Ke Chen, Mingfu Shao
2023 — conf
On de novo Bridging Paired-end RNA-seq Data.
BCB
Xiang Li, Mingfu Shao
2023 J jnl
On de novo Bridging Paired-end RNA-seq Data.
CoRR
Xiang Li, Mingfu Shao
2023 — conf
On the Maximal Independent Sets of
BCB
Leran Ma, Ke Chen, Mingfu Shao
2023 J jnl
On the Maximal Independent Sets of k-mers with the Edit Distance.
CoRR
Leran Ma, Ke Chen, Mingfu Shao
2023 J jnl
Seeding with minimized subsequence.
Bioinform.
Xiang Li, Qian Shi, Ke Chen, Mingfu Shao
2023 J jnl
Transcript assembly and annotations: Bias and adjustment.
PLoS Comput. Biol.
Qimin Zhang, Mingfu Shao
2022 J jnl
Accurate assembly of multi-end RNA-seq data with Scallop2.
Nat. Comput. Sci.
Qimin Zhang, Qian Shi, Mingfu Shao
2022 C conf
Locality-Sensitive Bucketing Functions for the Edit Distance.
WABI
Ke Chen, Mingfu Shao
2022 J jnl
Locality-sensitive bucketing functions for the edit distance.
CoRR
Ke Chen, Mingfu Shao
2020 J jnl
Context-aware seeds for read mapping.
Algorithms Mol. Biol.
Hongyi Xin, Mingfu Shao, Carl Kingsford
2019 C conf
Context-Aware Seeds for Read Mapping.
WABI
Hongyi Xin, Mingfu Shao, Carl Kingsford
2019 J jnl
Theory and A Heuristic for the Minimum Path Flow Decomposition Problem.
IEEE ACM Trans. Comput. Biol. Bioinform.
Mingfu Shao, Carl Kingsford
2017 J jnl
DeepBound: accurate identification of transcript boundaries via deep convolutional neural fields.
Bioinform.
Mingfu Shao, Jianzhu Ma, Sheng Wang
2017 J jnl
On Computing Breakpoint Distances for Genomes with Duplicate Genes.
J. Comput. Biol.
Mingfu Shao, Bernard M. E. Moret
2016 J jnl
A Fast and Exact Algorithm for the Exemplar Breakpoint Distance.
J. Comput. Biol.
Mingfu Shao, Bernard M. E. Moret
2016 J jnl
A maximum-likelihood approach for building cell-type trees by lifting.
BMC Genom.
Nishanth Ulhas Nair, Laura Hunter, Mingfu Shao, Paulina Grnarova, Yu Lin, Philipp Bucher, Bernard M. E. Moret
2016 B conf
On Computing Breakpoint Distances for Genomes with Duplicate Genes.
RECOMB
Mingfu Shao, Bernard M. E. Moret
2015 B conf
A Fast and Exact Algorithm for the Exemplar Breakpoint Distance.
RECOMB
Mingfu Shao, Bernard M. E. Moret
2015 J jnl
An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes.
J. Comput. Biol.
Mingfu Shao, Yu Lin, Bernard M. E. Moret
2015 J jnl
Comparing genomes with rearrangements and segmental duplications.
Bioinform.
Mingfu Shao, Bernard M. E. Moret
2015 — —
Models and Algorithms for Comparative Genomics.
Mingfu Shao
2014 B conf
An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate Genes.
RECOMB
Mingfu Shao, Yu Lin, Bernard M. E. Moret
2014 B conf
On the DCJ Median Problem.
CPM
Mingfu Shao, Bernard M. E. Moret
2013 J jnl
Sorting genomes with rearrangements and segmental duplications through trajectory graphs.
BMC Bioinform.
Mingfu Shao, Yu Lin, Bernard M. E. Moret
2012 J jnl
Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion.
BMC Bioinform.
Mingfu Shao, Yu Lin
2011 J jnl
Incorporating Ab Initio energy into threading approaches for protein structure prediction.
BMC Bioinform.
Mingfu Shao, Sheng Wang, Chao Wang, Xiongying Yuan, Shuai Li, Wei-Mou Zheng, Dongbo Bu