Ming Li - RankMe

290 papers A* 43A 7B 25C 4Misc 11Journal 153Unranked 30

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Proteoform search from protein database with top-down mass spectra. Nat. Comput. Sci. Kunyi Li, Baozhen Shan, Lei Xin, Ming Li, Lusheng Wang
2025	J	`jnl`	Towards highly sensitive deep learning-based end-to-end database search for tandem mass spectrometry. Nat. Mac. Intell. Yonghan Yu, Ming Li
2024	J	`jnl`	Disentangling the Complex Multiplexed DIA Spectra in De Novo Peptide Sequencing. CoRR Zheng Ma, Zeping Mao, Ruixue Zhang, Jiazhen Chen, Lei Xin, Paul Shan, Ali Ghodsi, Ming Li
2024	J	`jnl`	Understanding is Compression. CoRR Ziguang Li, Chao Huang, Xuliang Wang, Haibo Hu, Cole Wyeth, Dongbo Bu, Quan Yu, Wen Gao, Xingwu Liu, Ming Li
2023	J	`jnl`	Approximating Human-Like Few-shot Learning with GPT-based Compression. CoRR Cynthia Huang, Yuqing Xie, Zhiying Jiang, Jimmy Lin, Ming Li
2023	J	`jnl`	Mitigating the missing-fragmentation problem in de novo peptide sequencing with a two-stage graph-based deep learning model. Nat. Mac. Intell. Zeping Mao, Ruixue Zhang, Lei Xin, Ming Li
2022	J	`jnl`	A tale of solving two computational challenges in protein science: neoantigen prediction and protein structure prediction. Briefings Bioinform. Ngoc Hieu Tran, Jinbo Xu, Ming Li
2022	A*	`conf`	Few-Shot Non-Parametric Learning with Deep Latent Variable Model. NeurIPS Zhiying Jiang, Yiqin Dai, Ji Xin, Ming Li, Jimmy Lin
2022	J	`jnl`	Few-Shot Non-Parametric Learning with Deep Latent Variable Model. CoRR Zhiying Jiang, Yiqin Dai, Ji Xin, Ming Li, Jimmy Lin
2021	J	`jnl`	ChimST: An Efficient Spectral Library Search Tool for Peptide Identification from Chimeric Spectra in Data-Dependent Acquisition. IEEE ACM Trans. Comput. Biol. Bioinform. Wenju Zhang, Zhewei Liang, Xin Chen, Lei Xin, Baozhen Shan, Zhigang Luo, Ming Li
2021	J	`jnl`	Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices. Nat. Mach. Intell. Rui Qiao, Ngoc Hieu Tran, Lei Xin, Xin Chen, Ming Li, Baozhen Shan, Ali Ghodsi
2021	A	`conf`	Don't Change Me! User-Controllable Selective Paraphrase Generation. EACL Mohan Zhang, Luchen Tan, Zihang Fu, Kun Xiong, Jimmy Lin, Ming Li, Zhengkai Tu
2021	—	`conf`	Multi-Task Dense Retrieval via Model Uncertainty Fusion for Open-Domain Question Answering. EMNLP (Findings) Minghan Li, Ming Li, Kun Xiong, Jimmy Lin
2021	A*	`conf`	Segatron: Segment-Aware Transformer for Language Modeling and Understanding. AAAI He Bai, Peng Shi, Jimmy Lin, Yuqing Xie, Luchen Tan, Kun Xiong, Wen Gao, Ming Li
2021	—	`conf`	Semantics of the Unwritten: The Effect of End of Paragraph and Sequence Tokens on Text Generation with GPT2. ACL (student) He Bai, Peng Shi, Jimmy Lin, Luchen Tan, Kun Xiong, Wen Gao, Jie Liu, Ming Li
2021	—	`conf`	Unsupervised Chunking as Syntactic Structure Induction with a Knowledge-Transfer Approach. EMNLP (Findings) Anup Anand Deshmukh, Qianqiu Zhang, Ming Li, Jimmy Lin, Lili Mou
2020	Misc	`conf`	Approximate Nearest Neighbor Search and Lightweight Dense Vector Reranking in Multi-Stage Retrieval Architectures. ICTIR Zhengkai Tu, Wei Yang, Zihang Fu, Yuqing Xie, Luchen Tan, Kun Xiong, Ming Li, Jimmy Lin
2020	A*	`conf`	Distant Supervision for Multi-Stage Fine-Tuning in Retrieval-Based Question Answering. WWW Yuqing Xie, Wei Yang, Luchen Tan, Kun Xiong, Nicholas Jing Yuan, Baoxing Huai, Ming Li, Jimmy Lin
2020	J	`jnl`	Latte-Mix: Measuring Sentence Semantic Similarity with Latent Categorical Mixtures. CoRR Minghan Li, He Bai, Luchen Tan, Kun Xiong, Ming Li, Jimmy Lin
2020	J	`jnl`	Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines. Nat. Mach. Intell. Ngoc Hieu Tran, Rui Qiao, Lei Xin, Xin Chen, Baozhen Shan, Ming Li
2020	J	`jnl`	SegaBERT: Pre-training of Segment-aware BERT for Language Understanding. CoRR He Bai, Peng Shi, Jimmy Lin, Luchen Tan, Kun Xiong, Wen Gao, Ming Li
2020	J	`jnl`	Semantics of the Unwritten. CoRR He Bai, Peng Shi, Jimmy Lin, Luchen Tan, Kun Xiong, Wen Gao, Jie Liu, Ming Li
2020	J	`jnl`	To Paraphrase or Not To Paraphrase: User-Controllable Selective Paraphrase Generation. CoRR Mohan Zhang, Luchen Tan, Zhengkai Tu, Zihang Fu, Kun Xiong, Ming Li, Jimmy Lin
2020	A*	`conf`	Two Birds, One Stone: A Simple, Unified Model for Text Generation from Structured and Unstructured Data. ACL Hamidreza Shahidi, Ming Li, Jimmy Lin
2019	—	`book`	An Introduction to Kolmogorov Complexity and Its Applications, 4th Edition Ming Li, Paul M. B. Vitányi
2019	J	`jnl`	Data Augmentation for BERT Fine-Tuning in Open-Domain Question Answering. CoRR Wei Yang, Yuqing Xie, Luchen Tan, Kun Xiong, Ming Li, Jimmy Lin
2019	J	`jnl`	Deep Learning Deciphers Protein Genom. Proteom. Bioinform. Ming Li
2019	J	`jnl`	DeepNovoV2: Better de novo peptide sequencing with deep learning. CoRR Rui Qiao, Ngoc Hieu Tran, Ming Li, Lei Xin, Baozhen Shan, Ali Ghodsi
2019	—	`conf`	Detecting Customer Complaint Escalation with Recurrent Neural Networks and Manually-Engineered Features. NAACL-HLT (2) Wei Yang, Luchen Tan, Chunwei Lu, Anqi Cui, Han Li, Xi Chen, Kun Xiong, Muzi Wang, Ming Li, Jian Pei, Jimmy Lin
2019	—	`conf`	End-to-End Open-Domain Question Answering with BERTserini. NAACL-HLT (Demonstrations) Wei Yang, Yuqing Xie, Aileen Lin, Xingyu Li, Luchen Tan, Kun Xiong, Ming Li, Jimmy Lin
2019	J	`jnl`	End-to-End Open-Domain Question Answering with BERTserini. CoRR Wei Yang, Yuqing Xie, Aileen Lin, Xingyu Li, Luchen Tan, Kun Xiong, Ming Li, Jimmy Lin
2019	J	`jnl`	Two Birds, One Stone: A Simple, Unified Model for Text Generation from Structured and Unstructured Data. CoRR Hamidreza Shahidi, Ming Li, Jimmy Lin
2018	Misc	`conf`	Challenges from Cancer Immunotherapy. COCOON Ming Li
2018	J	`jnl`	DeepIso: A Deep Learning Model for Peptide Feature Detection. CoRR Fatema Tuz Zohora, Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li
2017	J	`jnl`	De novo peptide sequencing by deep learning. Proc. Natl. Acad. Sci. USA Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li
2017	J	`jnl`	Enhanced question understanding with dynamic memory networks for textual question answering. Expert Syst. Appl. Chunyi Yue, Hanqiang Cao, Kun Xiong, Anqi Cui, Haocheng Qin, Ming Li
2016	—	`ch.`	Closest String and Substring Problems. Encyclopedia of Algorithms Lusheng Wang, Ming Li, Bin Ma
2016	—	`ch.`	Nearest Neighbor Interchange and Related Distances. Encyclopedia of Algorithms Bhaskar DasGupta, Xin He, Ming Li, John Tromp, Louxin Zhang
2016	J	`jnl`	Neural Contextual Conversation Learning with Labeled Question-Answering Pairs. CoRR Kun Xiong, Anqi Cui, Zefeng Zhang, Ming Li
2016	—	`conf`	UWNLP at the NTCIR-12 Short Text Conversation Task. NTCIR Anqi Cui, Guangyu Feng, Borui Ye, Kun Xiong, Xing Yi Liu, Ming Li
2015	J	`jnl`	John Wooley and JBCB. J. Bioinform. Comput. Biol. Ming Li, Limsoon Wong
2015	—	`conf`	Question Classification by Approximating Semantics. WWW (Companion Volume) Guangyu Feng, Kun Xiong, Yang Tang, Anqi Cui, Jing Bai, Hang Li, Qiang Yang, Ming Li
2014	J	`jnl`	Estimating feature ratings through an effective review selection approach. Knowl. Inf. Syst. Chong Long, Jie Zhang, Minlie Huang, Xiaoyan Zhu, Ming Li, Bin Ma
2014	J	`jnl`	Fingerprinting protein structures effectively and efficiently. Bioinform. Xuefeng Cui, Shuai Cheng Li, Lin He, Ming Li
2014	—	`ch.`	Formal Models and Computability. Computing Handbook, 3rd ed. (1) Tao Jiang, Ming Li, Bala Ravikumar
2014	J	`jnl`	JBCB, the first decade. J. Bioinform. Comput. Biol. John C. Wooley, Ming Li, Limsoon Wong
2014	J	`jnl`	Merge-Weighted Dynamic Time Warping for Speech Recognition. J. Comput. Sci. Technol. Xianglilan Zhang, Zhigang Luo, Ming Li
2013	Misc	`conf`	Confidence index dynamic time warping for language-independent embedded speech recognition. ICASSP Xianglilan Zhang, Jiping Sun, Zhigang Luo, Ming Li
2013	J	`jnl`	Determining Protein Structures from NOESY Distance Constraints by Semidefinite Programming. J. Comput. Biol. Babak Alipanahi, Nathan Krislock, Ali Ghodsi, Henry Wolkowicz, Logan Donaldson, Ming Li
2013	J	`jnl`	Information distance between what I said and what it heard. Commun. ACM Yang Tang, Di Wang, Jing Bai, Xiaoyan Zhu, Ming Li
2013	J	`jnl`	LoopWeaver: Loop Modeling by the Weighted Scaling of Verified Proteins. J. Comput. Biol. Daniel Holtby, Shuai Cheng Li, Ming Li
2013	J	`jnl`	Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles? Algorithms Mol. Biol. Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi, Ming Li
2013	C	`conf`	Towards Reliable Automatic Protein Structure Alignment. WABI Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Ming Li
2012	—	`conf`	(2) Protein structure determination on demand. BIBM Ming Li
2012	—	`conf`	Classifying Stem Cell Differentiation Images by Information Distance. ECML/PKDD (1) Xianglilan Zhang, Hongnan Wang, Tony J. Collins, Zhigang Luo, Ming Li
2012	J	`jnl`	Clustering 100, 000 Protein Structure Decoys in Minutes. IEEE ACM Trans. Comput. Biol. Bioinform. Shuai Cheng Li, Dongbo Bu, Ming Li
2012	J	`jnl`	Combining automated peak tracking in SAR by NMR with structure-based backbone assignment from BMC Bioinform. Richard Jang, Xin Gao, Ming Li
2012	—	`conf`	Cytoplasm image classification based on Kolmogorov complexity. BMEI Xianglilan Zhang, Hongnan Wang, Tony J. Collins, Zhigang Luo, Ming Li
2012	C	`conf`	How Accurately Can We Model Protein Structures with Dihedral Angles? WABI Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi Ramandi, Ming Li
2012	B	`conf`	LoopWeaver - Loop Modeling by the Weighted Scaling of Verified Proteins. RECOMB Daniel Holtby, Shuai Cheng Li, Ming Li
2012	B	`conf`	Protein Structure by Semidefinite Facial Reduction. RECOMB Babak Alipanahi, Nathan Krislock, Ali Ghodsi, Henry Wolkowicz, Logan Donaldson, Ming Li
2012	J	`jnl`	Residues with Similar Hexagon Neighborhoods Share Similar Side-Chain Conformations. IEEE ACM Trans. Comput. Biol. Bioinform. Shuai Cheng Li, Dongbo Bu, Ming Li
2011	J	`jnl`	A New Multiword Expression Metric and Its Applications. J. Comput. Sci. Technol. Fan Bu, Xiaoyan Zhu, Ming Li
2011	—	`conf`	Combining ambiguous chemical shift mapping with structure-based backbone and NOE assignment from BCB Richard Jang, Xin Gao, Ming Li
2011	J	`jnl`	Error Tolerant NMR Backbone Resonance Assignment and Automated Structure Generation. J. Bioinform. Comput. Biol. Babak Alipanahi, Xin Gao, Emre Karakoç, Shuai Cheng Li, Frank J. Balbach, Guangyu Feng, Logan Donaldson, Ming Li
2011	J	`jnl`	Finding Nearly Optimal GDT Scores. J. Comput. Biol. Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li
2011	B	`conf`	Information Distance and Its Extensions. ALT Ming Li
2011	B	`conf`	Information Distance and Its Extensions. Discovery Science Ming Li
2011	—	`conf`	Partial Match Distance - In Memoriam Ray Solomonoff 1926-2009. Algorithmic Probability and Friends Ming Li
2011	J	`jnl`	Towards Fully Automated Structure-Based NMR Resonance Assignment of J. Comput. Biol. Richard Jang, Xin Gao, Ming Li
2010	J	`jnl`	A New Approach for Multi-Document Update Summarization. J. Comput. Sci. Technol. Chong Long, Minlie Huang, Xiaoyan Zhu, Ming Li
2010	J	`jnl`	Information Distance CoRR Charles H. Bennett, Péter Gács, Ming Li, Paul M. B. Vitányi, Wojciech H. Zurek
2010	B	`conf`	Measuring the Non-compositionality of Multiword Expressions. COLING Fan Bu, Xiaoyan Zhu, Ming Li
2010	J	`jnl`	Protein Secondary Structure Prediction Using NMR Chemical Shift Data. J. Bioinform. Comput. Biol. Yuzhong Zhao, Babak Alipanahi, Shuai Cheng Li, Ming Li
2010	B	`conf`	Towards Automated Structure-Based NMR Resonance Assignment. RECOMB Richard Jang, Xin Gao, Ming Li
2009	J	`jnl`	Can We Determine a Protein Structure Quickly? J. Comput. Sci. Technol. Ming Li
2009	J	`jnl`	Finding compact structural motifs. Theor. Comput. Sci. Dongbo Bu, Ming Li, Shuai Cheng Li, Jianbo Qian, Jinbo Xu
2009	A*	`conf`	Multi-document Summarization by Information Distance. ICDM Chong Long, Minlie Huang, Xiaoyan Zhu, Ming Li
2009	J	`jnl`	On two open problems of 2-interval patterns. Theor. Comput. Sci. Shuai Cheng Li, Ming Li
2009	J	`jnl`	PICKY: a novel SVD-based NMR spectra peak picking method. Bioinform. Babak Alipanahi, Xin Gao, Emre Karakoç, Logan Donaldson, Ming Li
2009	J	`jnl`	Predicting Local Quality of a Sequence-Structure Alignment. J. Bioinform. Comput. Biol. Xin Gao, Jinbo Xu, Shuai Cheng Li, Ming Li
2009	J	`jnl`	Preface. J. Comput. Sci. Technol. Ying Xu, Ming Li, Tao Jiang
2009	—	`conf`	Specialized Review Selection for Feature Rating Estimation. Web Intelligence Chong Long, Jie Zhang, Minlie Huang, Xiaoyan Zhu, Ming Li, Bin Ma
2008	—	`book`	An Introduction to Kolmogorov Complexity and Its Applications, Third Edition. Ming Li, Paul M. B. Vitányi
2008	A	`conf`	Designing succinct structural alphabets. ISMB Shuai Cheng Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li
2008	B	`conf`	Finding Largest Well-Predicted Subset of Protein Structure Models. CPM Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li
2008	A	`conf`	Information shared by many objects. CIKM Chong Long, Xiaoyan Zhu, Ming Li, Bin Ma
2008	J	`jnl`	Mango: Multiple Alignment with n Gapped Oligos. J. Bioinform. Comput. Biol. Zefeng Zhang, Hao Lin, Ming Li
2008	—	`ch.`	Nearest Neighbor Interchange and Related Distances. Encyclopedia of Algorithms Bhaskar DasGupta, Xin He, Tao Jiang, Ming Li, John Tromp, Louxin Zhang
2008	J	`jnl`	New Information Distance Measure and Its Application in Question Answering System. J. Comput. Sci. Technol. Xian Zhang, Yu Hao, Xiaoyan Zhu, Ming Li
2008	J	`jnl`	Normalized Information Distance CoRR Paul M. B. Vitányi, Frank J. Balbach, Rudi Cilibrasi, Ming Li
2008	B	`conf`	Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information. RECOMB Jing Zhang, Xin Gao, Jinbo Xu, Ming Li
2008	J	`jnl`	ZOOM! Zillions of oligos mapped. Bioinform. Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li
2007	J	`jnl`	Applications of algorithmic information theory. Scholarpedia Ming Li, Paul M. B. Vitányi
2007	J	`jnl`	Average-case analysis of QuickSort and Binary Insertion Tree height using incompressibility. Inf. Process. Lett. Brendan Lucier, Tao Jiang, Ming Li
2007	B	`conf`	Computing Exact p-Value for Structured Motif. CPM Jing Zhang, Xi Chen, Ming Li
2007	J	`jnl`	Computing exact Bioinform. Jing Zhang, Bo Jiang, Ming Li, John Tromp, Xuegong Zhang, Michael Q. Zhang
2007	B	`conf`	Finding Compact Structural Motifs. CPM Jianbo Qian, Shuai Cheng Li, Dongbo Bu, Ming Li, Jinbo Xu
2007	—	`conf`	Homology search for genes. ISMB/ECCB (Supplement of Bioinformatics) Xuefeng Cui, Tomás Vinar, Brona Brejová, Dennis E. Shasha, Ming Li
2007	J	`jnl`	Information Distance and its Applications. Int. J. Found. Comput. Sci. Ming Li
2007	Misc	`conf`	Information Distance from a Question to an Answer. COCOON Ming Li
2007	A*	`conf`	Information distance from a question to an answer. KDD Xian Zhang, Yu Hao, Xiaoyan Zhu, Ming Li, David R. Cheriton
2007	—	`conf`	Invited Talk: Modern Homology Search. ISBRA Ming Li
2007	J	`jnl`	Near optimal multiple alignment within a band in polynomial time. J. Comput. Syst. Sci. Bin Ma, Lusheng Wang, Ming Li
2007	J	`jnl`	On the complexity of the spaced seeds. J. Comput. Syst. Sci. Bin Ma, Ming Li
2006	J	`jnl`	A hybrid method for relation extraction from biomedical literature. Int. J. Medical Informatics Minlie Huang, Xiaoyan Zhu, Ming Li
2006	B	`conf`	From Three Ideas in TCS to Three Applications in Bioinformatics. MFCS Ming Li
2006	C	`conf`	Information Distance and Its Applications. CIAA Ming Li
2006	Misc	`conf`	Information distance. GrC Ming Li
2006	B	`conf`	ONBRIRES: Ontology-Based Biological Relation Extraction System. APBC Minlie Huang, Xiaoyan Zhu, Shilin Ding, Hao Yu, Ming Li
2006	C	`conf`	On the Complexity of the Crossing Contact Map Pattern Matching Problem. WABI Shuai Cheng Li, Ming Li
2006	J	`jnl`	Optimizing Multiple Spaced Seeds for Homology Search. J. Comput. Biol. Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma
2006	J	`jnl`	Prima: Peptide Robust Identification from Ms/ms Spectra. J. Bioinform. Comput. Biol. Jian Liu, Bin Ma, Ming Li
2006	A*	`conf`	Superiority and complexity of the spaced seeds. SODA Ming Li, Bin Ma, Louxin Zhang
2005	—	`conf`	A New Algorithm for Pattern Optimization in Protein-Protein Interaction Extraction System. IbPRIA (2) Yu Hao, Xiaoyan Zhu, Ming Li
2005	B	`conf`	Consensus fold recognition by predicted model quality. APBC Jinbo Xu, Libo Yu, Ming Li
2005	Misc	`conf`	Discovering Sequence-Structure Motifs from Protein Segments and Two Applications. Pacific Symposium on Biocomputing Thomas Tang, Jinbo Xu, Ming Li
2005	J	`jnl`	Discovering patterns to extract protein-protein interactions from the literature: Part II. Bioinform. Hao Yu, Xiaoyan Zhu, Minlie Huang, Ming Li
2005	—	`conf`	ExonHunter: a comprehensive approach to gene finding. ISMB (Supplement of Bioinformatics) Brona Brejová, Daniel G. Brown, Ming Li, Tomás Vinar
2005	J	`jnl`	Finding Cancer Biomarkers from Mass Spectrometry Data by Decision Lists. J. Comput. Biol. Jian Liu, Ming Li
2005	B	`conf`	PRIME: Peptide robust identification from MS/MS spectra. APBC Jian Liu, Bin Ma, Ming Li
2005	J	`jnl`	tPatternHunter: gapped, fast and sensitive translated homology search . Bioinform. Derek Kisman, Ming Li, Bin Ma, Li Wang
2004	J	`jnl`	A Note on the Single Genotype Resolution Problem. J. Comput. Sci. Technol. Hao Lin, Zefeng Zhang, Qiang-Feng Zhang, Dongbo Bu, Ming Li
2004	J	`jnl`	A Tutorial of Recent Developments in the Seeding of Local Alignment. J. Bioinform. Comput. Biol. Daniel G. Brown, Ming Li, Bin Ma
2004	—	`conf`	Discovering Patterns to Extract Protein-Protein Interactions from Full Biomedical Texts. NLPBA/BioNLP Minlie Huang, Xiaoyan Zhu, Donald G. Payan, Kunbin Qu, Ming Li
2004	J	`jnl`	Discovering patterns to extract protein-protein interactions from full texts. Bioinform. Minlie Huang, Xiaoyan Zhu, Hao Yu, Donald G. Payan, Kunbin Qu, Ming Li
2004	—	`conf`	Finding Cancer Biomarkers from Mass Spectrometry Data by Decision Lists. CSB Jian Liu, Ming Li
2004	J	`jnl`	On spaced seeds for similarity search. Discret. Appl. Math. Uri Keich, Ming Li, Bin Ma, John Tromp
2004	B	`conf`	Optimizing Multiple Spaced Seeds for Homology Search. CPM Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma
2004	B	`conf`	PathwayFinder: Paving the Way Towards Automatic Pathway Extraction. APBC Daming Yao, Jingbo Wang, Yanmei Lu, Nathan Noble, Huandong Sun, Xiaoyan Zhu, Nan Lin, Donald G. Payan, Ming Li, Kunbin Qu
2004	J	`jnl`	Patternhunter Ii: Highly Sensitive and Fast Homology Search. J. Bioinform. Comput. Biol. Ming Li, Bin Ma, Derek Kisman, John Tromp
2004	J	`jnl`	Protein Threading by Linear Programming: Theoretical Analysis and Computational Results. J. Comb. Optim. Jinbo Xu, Ming Li, Ying Xu
2004	J	`jnl`	Selecting the branches for an evolutionary tree.: A polynomial time approximation scheme. J. Algorithms Jonathan H. Badger, Paul E. Kearney, Ming Li, John Tsang, Tao Jiang
2004	J	`jnl`	Shared information and program plagiarism detection. IEEE Trans. Inf. Theory Xin Chen, Brent Francia, Ming Li, Brian McKinnon, Amit Seker
2004	J	`jnl`	The similarity metric. IEEE Trans. Inf. Theory Ming Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vitányi
2003	J	`jnl`	Distinguishing string selection problems. Inf. Comput. J. Kevin Lanctôt, Ming Li, Bin Ma, Shaojiu Wang, Louxin Zhang
2003	J	`jnl`	MOLVIE: an interactive visualization environment for molecular structures. Comput. Methods Programs Biomed. Huandong Sun, Ming Li, Ying Xu
2003	Misc	`conf`	Protein Threading by Linear Programming. Pacific Symposium on Biocomputing Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu
2003	J	`jnl`	Raptor: Optimal Protein Threading by Linear Programming. J. Bioinform. Comput. Biol. Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu
2003	J	`jnl`	Sharpening Occam's razor. Inf. Process. Lett. Ming Li, John Tromp, Paul M. B. Vitányi
2003	A*	`conf`	The similarity metric. SODA Ming Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vitányi
2002	J	`jnl`	DNACompress: fast and effective DNA sequence compression. Bioinform. Xin Chen, Ming Li, Bin Ma, John Tromp
2002	J	`jnl`	Finding Similar Regions in Many Sequences. J. Comput. Syst. Sci. Ming Li, Bin Ma, Lusheng Wang
2002	J	`jnl`	On the closest string and substring problems. J. ACM Ming Li, Bin Ma, Lusheng Wang
2002	J	`jnl`	PatternHunter: faster and more sensitive homology search. Bioinform. Bin Ma, John Tromp, Ming Li
2002	J	`jnl`	Sharpening Occam's Razor CoRR Ming Li, John Tromp, Paul M. B. Vitányi
2002	Misc	`conf`	Sharpening Occam's Razor. COCOON Ming Li, John Tromp, Paul M. B. Vitányi
2002	J	`jnl`	The average-case area of Heilbronn-type triangles. Random Struct. Algorithms Tao Jiang, Ming Li, Paul M. B. Vitányi
2001	J	`jnl`	A New Approach to Formal Language Theory by Kolmogorov Complexity CoRR Ming Li, Paul M. B. Vitányi
2001	J	`jnl`	An information-based sequence distance and its application to whole mitochondrial genome phylogeny. Bioinform. Ming Li, Jonathan H. Badger, Xin Chen, Sam Kwong, Paul E. Kearney, Haoyong Zhang
2001	J	`jnl`	Selected papers from ALT 1997 - Foreword. Theor. Comput. Sci. Ming Li
2001	J	`jnl`	The similarity metric CoRR Ming Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vitányi
2000	J	`jnl`	A Polynomial Time Approximation Scheme for Inferring Evolutionary Trees from Quartet Topologies and Its Application. SIAM J. Comput. Tao Jiang, Paul E. Kearney, Ming Li
2000	B	`conf`	A compression algorithm for DNA sequences and its applications in genome comparison. RECOMB Xin Chen, Sam Kwong, Ming Li
2000	J	`jnl`	A lower bound on the average-case complexity of shellsort. J. ACM Tao Jiang, Ming Li, Paul M. B. Vitányi
2000	A*	`conf`	A practical algorithm for recovering the best supported edges of an evolutionary tree (extended abstract). SODA Vincent Berry, David Bryant, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham, Haoyong Zhang
2000	J	`jnl`	Applying MDL to Learning Best Model Granularity CoRR Qiong Gao, Ming Li, Paul M. B. Vitányi
2000	J	`jnl`	Applying MDL to learn best model granularity. Artif. Intell. Qiong Gao, Ming Li, Paul M. B. Vitányi
2000	J	`jnl`	Average-Case Analysis of Algorithms Using Kolmogorov Complexity. J. Comput. Sci. Technol. Tao Jiang, Ming Li, Paul M. B. Vitányi
2000	A*	`conf`	Computing the quartet distance between evolutionary trees. SODA David Bryant, John Tsang, Paul E. Kearney, Ming Li
2000	A*	`conf`	Estimating DNA sequence entropy. SODA J. Kevin Lanctôt, Ming Li, En-Hui Yang
2000	J	`jnl`	Fixed topology alignment with recombination. Discret. Appl. Math. Lusheng Wang, Bin Ma, Ming Li
2000	J	`jnl`	From Gene Trees to Species Trees. SIAM J. Comput. Bin Ma, Ming Li, Louxin Zhang
2000	J	`jnl`	Minimum description length induction, Bayesianism, and Kolmogorov complexity. IEEE Trans. Inf. Theory Paul M. B. Vitányi, Ming Li
2000	A*	`conf`	Near optimal multiple alignment within a band in polynomial time. STOC Ming Li, Bin Ma, Lusheng Wang
2000	J	`jnl`	New applications of the incompressibility method: Part II. Theor. Comput. Sci. Harry Buhrman, Tao Jiang, Ming Li, Paul M. B. Vitányi
2000	J	`jnl`	On The Closest String and Substring Problems CoRR Ming Li, Bin Ma, Lusheng Wang
2000	J	`jnl`	Some Open Problems in Computational Molecular Biology. J. Algorithms Tao Jiang, Paul E. Kearney, Ming Li
2000	B	`conf`	The Incompressibility Method. SOFSEM Tao Jiang, Ming Li, Paul M. B. Vitányi
1999	J	`jnl`	Approximation Algorithms for Directed Steiner Problems. J. Algorithms Moses Charikar, Chandra Chekuri, To-Yat Cheung, Zuo Dai, Ashish Goel, Sudipto Guha, Ming Li
1999	J	`jnl`	Average-Case Complexity of Shellsort CoRR Tao Jiang, Ming Li, Paul M. B. Vitányi
1999	J	`jnl`	Average-Case Complexity of Shellsort (Preliminary version) CoRR Tao Jiang, Ming Li, Paul M. B. Vitányi
1999	A*	`conf`	Average-Case Complexity of Shellsort. ICALP Tao Jiang, Ming Li, Paul M. B. Vitányi
1999	—	`ch.`	Basic Notions in Computational Complexity. Algorithms and Theory of Computation Handbook Tao Jiang, Ming Li, Bala Ravikumar
1999	—	`ch.`	Computability. Algorithms and Theory of Computation Handbook Tao Jiang, Ming Li, Bala Ravikumar, Kenneth W. Regan
1999	A*	`conf`	Distinguishing String Selection Problems. SODA J. Kevin Lanctôt, Ming Li, Bin Ma, Shaojiu Wang, Louxin Zhang
1999	A*	`conf`	Finding Similar Regions in Many Strings. STOC Ming Li, Bin Ma, Lusheng Wang
1999	—	`ch.`	Formal Grammars and Languages. Algorithms and Theory of Computation Handbook Tao Jiang, Ming Li, Bala Ravikumar, Kenneth W. Regan
1999	J	`jnl`	Kolmogorov Random Graphs and the Incompressibility Method. SIAM J. Comput. Harry Buhrman, Ming Li, John Tromp, Paul M. B. Vitányi
1999	J	`jnl`	Minimum Description Length Induction, Bayesianism, and Kolmogorov Complexity CoRR Paul M. B. Vitányi, Ming Li
1999	A*	`conf`	New Applications of the Incompressibility Method. ICALP Harry Buhrman, Tao Jiang, Ming Li, Paul M. B. Vitányi
1999	J	`jnl`	New Applications of the Incompressibility Method. Comput. J. Tao Jiang, Ming Li, Paul M. B. Vitányi
1999	—	`conf`	On computing the nearest neighbor interchange distance. Discrete Mathematical Problems with Medical Applications Bhaskar DasGupta, Xin He, Tao Jiang, Ming Li, John Tromp, Louxin Zhang
1999	J	`jnl`	On the Linear-Cost Subtree-Transfer Distance between Phylogenetic Trees. Algorithmica Bhaskar DasGupta, Xin He, Tao Jiang, Ming Li, John Tromp
1999	A	`conf`	Quartet Cleaning: Improved Algorithms and Simulations. ESA Vincent Berry, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham
1999	A*	`conf`	Recovering Branches on the Tree of Life: An Approximation Algorithm. SODA Paul E. Kearney, Ming Li, John Tsang, Tao Jiang
1999	—	`conf`	Some Examples of Average-case Analysis by the Imcompressibility Method. Jewels are Forever Tao Jiang, Ming Li, Paul M. B. Vitányi
1999	J	`jnl`	Some open problems in computational molecular biology. SIGACT News Tao Jiang, Paul E. Kearney, Ming Li
1999	J	`jnl`	The Average-Case Area of Heilbronn-Type Triangles CoRR Tao Jiang, Ming Li, Paul M. B. Vitányi
1999	A	`conf`	The Expected Size of Heilbronn's Triangles. CCC Tao Jiang, Ming Li, Paul M. B. Vitányi
1999	J	`jnl`	Twist-Rotation Transformations of Binary Trees and Arithmetic Expressions. J. Algorithms Ming Li, Louxin Zhang
1998	J	`jnl`	Addition in log Theor. Comput. Sci. Richard Beigel, William I. Gasarch, Ming Li, Louxin Zhang
1998	A*	`conf`	Approximation Algorithms for Directed Steiner Problems. SODA Moses Charikar, Chandra Chekuri, To-Yat Cheung, Zuo Dai, Ashish Goel, Sudipto Guha, Ming Li
1998	—	`conf`	Average-Case Analysis Using Kolgomorov Complexity (Abstract). CATS Ming Li, Paul M. B. Vitányi
1998	Misc	`conf`	Better Approximation of Diagonal-Flip Transformation and Rotation Transformation. COCOON Ming Li, Louxin Zhang
1998	B	`conf`	Fixed Topology Alignment with Recombination. CPM Bin Ma, Lusheng Wang, Ming Li
1998	J	`jnl`	Information Distance. IEEE Trans. Inf. Theory Charles H. Bennett, Péter Gács, Ming Li, Paul M. B. Vitányi, Wojciech H. Zurek
1998	J	`jnl`	New Applications of the Incompressibility Method: Part I CoRR Tao Jiang, Ming Li, Paul M. B. Vitányi
1998	J	`jnl`	New Applications of the Incompressibility Method: Part II CoRR Harry Buhrman, Tao Jiang, Ming Li, Paul M. B. Vitányi
1998	B	`conf`	On reconstructing species trees from gene trees in term of duplications and losses. RECOMB Bin Ma, Ming Li, Louxin Zhang
1998	J	`jnl`	On the Complexity and Approximation of Syntenic Distance. Discret. Appl. Math. Bhaskar DasGupta, Tao Jiang, Sampath Kannan, Ming Li, Elizabeth Sweedyk
1998	A*	`conf`	Orchestrating Quartets: Approximation and Data Correction. FOCS Tao Jiang, Paul E. Kearney, Ming Li
1997	—	`book`	An introduction to Kolmogorov complexity and its applications, Second Edition. Ming Li, Paul M. B. Vitányi
1997	—	`conf`	Average-Case Analysis Using Kolmogorov Complexity. Advances in Algorithms, Languages, and Complexity Ming Li, Paul M. B. Vitányi
1997	B	`conf`	Average-Case Analysis via Incompressibility. FCT Ming Li, Paul M. B. Vitányi
1997	J	`jnl`	Foreword (COCOON'95). Theor. Comput. Sci. Ding-Zhu Du, Ming Li
1997	—	`ch.`	Formal Models and Computability. The Computer Science and Engineering Handbook Tao Jiang, Ming Li, Bala Ravikumar
1997	J	`jnl`	Inferring a DNA Sequence from Erroneous Copies. Theor. Comput. Sci. John D. Kececioglu, Ming Li, John Tromp
1997	—	`conf`	Kolmogorov random graphs. SEQUENCES Harry Buhrman, Ming Li, Paul M. B. Vitányi
1997	A*	`conf`	On Distances between Phylogenetic Trees (Extended Abstract). SODA Bhaskar DasGupta, Xin He, Tao Jiang, Ming Li, John Tromp, Louxin Zhang
1997	—	`conf`	On Prediction by Data Compression. ECML Paul M. B. Vitányi, Ming Li
1997	B	`conf`	On the complexity and approximation of syntenic distance. RECOMB Bhaskar DasGupta, Tao Jiang, Sampath Kannan, Ming Li, Z. Sweedyk
1997	J	`jnl`	Reversibility and Adiabatic Computation: Trading Time and Space for Energy CoRR Ming Li, Paul M. B. Vitányi
1997	J	`jnl`	Reversible Simulation of Irreversible Computation by Pebble Games CoRR Ming Li, John Tromp, Paul M. B. Vitányi
1997	—	`ch.`	Shortest common superstrings. Pattern Matching Algorithms Ming Li, Tao Jiang
1996	J	`jnl`	Addition in log Electron. Colloquium Comput. Complex. Richard Beigel, William I. Gasarch, Ming Li, Louxin Zhang
1996	J	`jnl`	DNA Sequencing and String Learning. Math. Syst. Theory Tao Jiang, Ming Li
1996	J	`jnl`	How to Share Concurrent Wait-Free Variables. J. ACM Ming Li, John Tromp, Paul M. B. Vitányi
1996	J	`jnl`	Iterative Belief Revision in Extended Logic Programming. Theor. Comput. Sci. Jia-Huai You, Robert Cartwright, Ming Li
1996	J	`jnl`	K One-Way Heads Cannot Do String-Matching. J. Comput. Syst. Sci. Tao Jiang, Ming Li
1996	J	`jnl`	Lower Bounds on Learning Decision Lists and Trees. Inf. Comput. Thomas R. Hancock, Tao Jiang, Ming Li, John Tromp
1996	A	`conf`	Reversible Simulation of Irreversible Computation. CCC Ming Li, Paul M. B. Vitányi
1996	Misc	`conf`	Some Notes on the Nearest Neighbour Interchange Distance. COCOON Ming Li, John Tromp, Louxin Zhang
1995	J	`jnl`	A New Approach to Formal Language Theory by Kolmogorov Complexity. SIAM J. Comput. Ming Li, Paul M. B. Vitányi
1995	B	`conf`	Algorithmic Arguments in Physics of Computation. WADS Paul M. B. Vitányi, Ming Li
1995	—	`ch.`	Computational Machine Learning in Theory and Praxis. Computer Science Today Ming Li, Paul M. B. Vitányi
1995	Misc	`ed.`	Computing and Combinatorics, First Annual International Conference, COCOON '95, Xi'an, China, August 24-26, 1995, Proceedings COCOON Ding-Zhu Du, Ming Li
1995	B	`conf`	Inferring a DNA Sequence from Erroneous Copies (Abstract). ALT John D. Kececioglu, Ming Li, John Tromp
1995	A	`conf`	Lower Bounds on Learning Decision Lists and Trees (Extended Abstract). STACS Thomas R. Hancock, Tao Jiang, Ming Li, John Tromp
1995	J	`jnl`	On the Approximation of Shortest Common Supersequences and Longest Common Subsequences. SIAM J. Comput. Tao Jiang, Ming Li
1994	J	`jnl`	Approximating Shortest Superstrings with Constraints. Theor. Comput. Sci. Tao Jiang, Ming Li
1994	J	`jnl`	Kolmogorov Complexity Arguments in Combinatorics. J. Comb. Theory A Ming Li, Paul M. B. Vitányi
1994	J	`jnl`	Learning Boolean Formulas. J. ACM Michael J. Kearns, Ming Li, Leslie G. Valiant
1994	J	`jnl`	Linear Approximation of Shortest Superstrings. J. ACM Avrim Blum, Tao Jiang, Ming Li, John Tromp, Mihalis Yannakakis
1994	A*	`conf`	On the Approximation of Shortest Common Supersequences and Longest Common Subsequences. ICALP Tao Jiang, Ming Li
1994	J	`jnl`	Statistical Properties of Finite Sequences with High Kolmogorov Complexity. Math. Syst. Theory Ming Li, Paul M. B. Vitányi
1994	J	`jnl`	Three One-Way Heads Cannot Do String Matching. J. Comput. Syst. Sci. Mihály Geréb-Graus, Ming Li
1994	J	`jnl`	Wait-Free Consensus Using Asynchronous Hardware. SIAM J. Comput. Benny Chor, Amos Israeli, Ming Li
1993	—	`book`	An introduction to Kolmogorov complexity and its applications. Ming Li, Paul M. B. Vitányi
1993	B	`conf`	Approximating Shortest Superstrings with Constraints (Extended Abstract). WADS Tao Jiang, Ming Li
1993	J	`jnl`	Bonded Time-Stamps. Distributed Comput. Amos Israeli, Ming Li
1993	J	`jnl`	Learning in the Presence of Malicious Errors. SIAM J. Comput. Michael J. Kearns, Ming Li
1993	J	`jnl`	On the Complexity of Learning Strings and Sequences. Theor. Comput. Sci. Tao Jiang, Ming Li
1993	A*	`conf`	Thermodynamics of computation and information distance. STOC Charles H. Bennett, Péter Gács, Ming Li, Paul M. B. Vitányi, Wojciech H. Zurek
1993	A*	`conf`	k one-way heads cannot do string-matching. STOC Tao Jiang, Ming Li
1992	J	`jnl`	A Note on Shortest Superstrings with Flipping. Inf. Process. Lett. Tao Jiang, Ming Li, Ding-Zhu Du
1992	J	`jnl`	Average Case Complexity Under the Universal Distribution Equals Worst-Case Complexity. Inf. Process. Lett. Ming Li, Paul M. B. Vitányi
1992	J	`jnl`	Inductive Reasoning and Kolmogorov Complexity. J. Comput. Syst. Sci. Ming Li, Paul M. B. Vitányi
1992	—	`conf`	Inductive reasoning. Language Computations Ming Li, Paul M. B. Vitányi
1992	J	`jnl`	Optimality of Wait-Free Atomic Multiwriter Variables. Inf. Process. Lett. Ming Li, Paul M. B. Vitányi
1992	A*	`conf`	Philosophical Issues in Kolmogorov Complexity. ICALP Ming Li, Paul M. B. Vitányi
1992	J	`jnl`	The Power of the Queue. SIAM J. Comput. Ming Li, Luc Longpré, Paul M. B. Vitányi
1992	J	`jnl`	Theory and Algorithms for Plan Merging. Artif. Intell. David E. Foulser, Ming Li, Qiang Yang
1991	A*	`conf`	A Quantitative Theory for Plan Merging. AAAI David E. Foulser, Ming Li, Qiang Yang
1991	—	`book`	An introduction to Kolmogorov - complexity and its applications ; part 1: theory. Ming Li, Paul M. B. Vitányi
1991	—	`conf`	Combinatorics and Kolmogorov Complexity. SCT Ming Li, Paul M. B. Vitányi
1991	J	`jnl`	Learning Simple Concept Under Simple Distributions. SIAM J. Comput. Ming Li, Paul M. B. Vitányi
1991	A*	`conf`	Linear Approximation of Shortest Superstrings STOC Avrim Blum, Tao Jiang, Ming Li, John Tromp, Mihalis Yannakakis
1991	A*	`conf`	On the Complexity of Learning Strings and Sequences. COLT Tao Jiang, Ming Li
1991	J	`jnl`	Resource Bounds for Parallel Computation of Threshold and Symmetric Functions. J. Comput. Syst. Sci. Ming Li, Yaacov Yesha
1990	—	`ch.`	Kolmogorov Complexity and its Applications. Handbook of Theoretical Computer Science, Volume A: Algorithms and Complexity (A) Ming Li, Paul M. B. Vitányi
1990	A*	`conf`	Towards a DNA Sequencing Theory (Learning a String) (Preliminary Version) FOCS Ming Li
1989	A*	`conf`	A New Approach to Formal Language Theory by Kolmogorov Complexity (Preliminary Version). ICALP Ming Li, Paul M. B. Vitányi
1989	A*	`conf`	A Theory of Learning Simple Concepts Under Simple Distributions and Average Case Complexity for the Universal Distribution (Extended Abstract) FOCS Ming Li, Paul M. B. Vitányi
1989	J	`jnl`	Geometric Optimization and D Discret. Comput. Geom. Chandrajit L. Bajaj, Ming Li
1989	A*	`conf`	How to Share Concurrent Asynchronous Wait-Free Varaibles (Preliminary Version). ICALP Ming Li, Paul M. B. Vitányi
1989	—	`conf`	Inductive Reasoning and Komogorov Complexity. SCT Ming Li, Paul M. B. Vitányi
1989	J	`jnl`	New lower bounds for parallel computation. J. ACM Ming Li, Yaacov Yesha
1989	J	`jnl`	On the Power of Concurrent-Write PRAMs With Read-Only Memory Inf. Comput. Faith E. Fich, Ming Li, Prabhakar Ragde, Yaacov Yesha
1989	A*	`conf`	The Minimum Description Length Principle and Its Application to Online Learning of Handprinted Characters. IJCAI Qiong Gao, Ming Li
1988	J	`jnl`	A Separator Theorem for One-Dimensional Graphs Under Linear Mapping. Inf. Process. Lett. Ming Li
1988	A*	`conf`	Learning in the Presence of Malicious Errors (Extended Abstract) STOC Michael J. Kearns, Ming Li
1988	A*	`conf`	On the Learnability of Finite Automata. COLT Ming Li, Umesh V. Vazirani
1988	J	`jnl`	Simulating Two Pushdown Stores by One Tape in O(n^1.5 sqrt(log n)) Time. J. Comput. Syst. Sci. Ming Li
1988	J	`jnl`	Tape versus Queue and Stacks: The Lower Bounds Inf. Comput. Ming Li, Paul M. B. Vitányi
1988	—	`conf`	Two decades of applied Kolmogorov complexity: in memoriam Andrei Nikolaevich Kolmogorov 1903-87. SCT Ming Li, Paul M. B. Vitányi
1988	J	`jnl`	k+1 Heads Are Better than k for PDAs. J. Comput. Syst. Sci. Marek Chrobak, Ming Li
1987	A*	`conf`	Bounded Time-Stamps (Extended Abstract) FOCS Amos Israeli, Ming Li
1987	A*	`conf`	On Processor Coordination Using Asynchronous Hardware. PODC Benny Chor, Amos Israeli, Ming Li
1987	A*	`conf`	On the Learnability of Boolean Formulae STOC Michael J. Kearns, Ming Li, Leonard Pitt, Leslie G. Valiant
1987	J	`jnl`	Separation and Lower Bounds for ROM and Nondeterministic Models of Parallel Computation Inf. Comput. Ming Li, Yaacov Yesha
1987	A*	`conf`	The Probabilistic and Deterministic Parallel Complexity of Symmetric Functions. ICALP Ming Li, Yaacov Yesha
1986	A*	`conf`	Containment, Separation, Complete Sets, and Immunity of Complexity Classes. ICALP Juris Hartmanis, Ming Li, Yaacov Yesha
1986	A*	`conf`	New Lower Bounds for Parallel Computation STOC Ming Li, Yaacov Yesha
1986	J	`jnl`	String-Matching Cannot be Done by a Two-Head One-Way Deterministic Finite Automation. Inf. Process. Lett. Ming Li, Yaacov Yesha
1986	—	`conf`	The Power of the Queue. SCT Ming Li, Luc Longpré, Paul M. B. Vitányi
1986	A*	`conf`	k+1 Heads Are Better than k for PDA's FOCS Marek Chrobak, Ming Li
1985	A*	`conf`	Lower Bounds by Kolmogorov-Complexity (Extended Abstract). ICALP Ming Li
1985	—	`—`	Lower Bounds in Computational Complexity. Ming Li
1985	A*	`conf`	Simulating Two Pushdown Stores by One Tape in O(n^1.5 sqrt(log n)) Time FOCS Ming Li