Ming Hu

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2026 J jnl
AdaptOVCD: Training-Free Open-Vocabulary Remote Sensing Change Detection via Adaptive Information Fusion.
CoRR
Mingyu Dou, Shi Qiu, Ming Hu, Yifan Chen, Huping Ye, Xiaohan Liao, Zhe Sun
2025 J jnl
MCAMamba: Multilevel Cross-Modal Attention-Guided State-Space Model for Multisource Remote Sensing Image Classification.
IEEE Trans. Geosci. Remote. Sens.
Mingyu Dou, Shi Qiu, Ming Hu, Xiaozhen Qiao, Huping Ye, Xiaohan Liao, Zhe Sun
2024 J jnl
SnapHiC-G: identifying long-range enhancer-promoter interactions from single-cell Hi-C data via a global background model.
Briefings Bioinform.
Weifang Liu, Wujuan Zhong, Paola Giusti-Rodríguez, Zhiyun Jiang, Geoffery W. Wang, Huaigu Sun, Ming Hu, Yun Li
2023 J jnl
SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data.
Briefings Bioinform.
Lindsay Lee, Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu, Ziyin Chen, Shreya Mishra, Bing Ren, Yun Li, Ming Hu
2022 J jnl
A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data.
Briefings Bioinform.
Le Huang, Yuchen Yang, Gang Li, Minzhi Jiang, Jia Wen, Armen Abnousi, Jonathan D. Rosen, Ming Hu, Yun Li
2020 J jnl
Inferring Spatial Organization of Individual Topologically Associated Domains via Piecewise Helical Model.
IEEE ACM Trans. Comput. Biol. Bioinform.
Rongrong Zhang, Ming Hu, Yu Zhu, Zhaohui S. Qin, Ke Deng, Jun S. Liu
2019 J jnl
MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.
PLoS Comput. Biol.
Ivan Juric, Miao Yu, Armen Abnousi, Ramya Raviram, Rongxin Fang, Yuan Zhao, Yan-Xiao Zhang, Yunjiang Qiu, Yuchen Yang, Yun Li, Bing Ren, Ming Hu
2018 J jnl
DIMM-SC: a Dirichlet mixture model for clustering droplet-based single cell transcriptomic data.
Bioinform.
Zhe Sun, Ting Wang, Ke Deng, Xiao-Feng Wang, Robert Lafyatis, Ying Ding, Ming Hu, Wei Chen
2017 J jnl
HUGIn: Hi-C Unifying Genomic Interrogator.
Bioinform.
Joshua S. Martin, Zheng Xu, Alex P. Reiner, Karen L. Mohlke, Patrick F. Sullivan, Bing Ren, Ming Hu, Yun Li
2016 J jnl
A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data.
Bioinform.
Zheng Xu, Guosheng Zhang, Fulai Jin, Mengjie Chen, Terrence S. Furey, Patrick F. Sullivan, Zhaohui S. Qin, Ming Hu, Yun Li
2016 J jnl
FastHiC: a fast and accurate algorithm to detect long-range chromosomal interactions from Hi-C data.
Bioinform.
Zheng Xu, Guosheng Zhang, Cong Wu, Yun Li, Ming Hu
2013 J jnl
Bayesian Inference of Spatial Organizations of Chromosomes.
PLoS Comput. Biol.
Ming Hu, Ke Deng, Zhaohui S. Qin, Jesse R. Dixon, Siddarth Selvaraj, Jennifer Fang, Bing Ren, Jun S. Liu
2013 J jnl
Understanding spatial organizations of chromosomes via statistical analysis of Hi-C data.
Quant. Biol.
Ming Hu, Ke Deng, Zhaohui S. Qin, Jun S. Liu
2012 J jnl
HiCNorm: removing biases in Hi-C data via Poisson regression.
Bioinform.
Ming Hu, Ke Deng, Siddarth Selvaraj, Zhaohui S. Qin, Bing Ren, Jun S. Liu
2012 J jnl
Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq.
Bioinform.
Ming Hu, Yu Zhu, Jeremy M. G. Taylor, Jun S. Liu, Zhaohui S. Qin
2010 J jnl
HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data.
BMC Bioinform.
Zhaohui S. Qin, Jianjun Yu, Jincheng Shen, Christopher A. Maher, Ming Hu, Shanker Kalyana-Sundaram, Jindan Yu, Arul M. Chinnaiyan