Mile Sikic - RankMe

41 papers C 4Misc 2Journal 27Unranked 8

Year	Rank	Type	Title / Venue / Authors
2024	—	`conf`	Comparative Analysis of Nanopore-based Unsupervised Learning Methods in Epitranscriptomics. MIPRO Ivan Vujaklija, Sinisa Bidin, Mile Sikic
2024	J	`jnl`	Comparative analysis of metagenomic classifiers for long-read sequencing datasets. BMC Bioinform. Josip Maric, Kresimir Krizanovic, Sylvain Riondet, Niranjan Nagarajan, Mile Sikic
2024	J	`jnl`	RiNALMo: General-Purpose RNA Language Models Can Generalize Well on Structure Prediction Tasks. CoRR Rafael Josip Penic, Tin Vlasic, Roland G. Huber, Yue Wan, Mile Sikic
2023	C	`conf`	Finding Hamiltonian Cycles with Graph Neural Networks. ISPA Filip Bosnic, Mile Sikic
2023	J	`jnl`	Finding Hamiltonian cycles with graph neural networks. CoRR Filip Bosnic, Mile Sikic
2023	C	`conf`	Graph Neural Network Meets de Bruijn Genome Assembly. ISPA Marijo Simunovic, Lovro Vrcek, Mile Sikic
2023	—	`conf`	Reconstruction of short genomic sequences with graph convolutional networks. MIPRO Lovro Vrcek, Xavier Bresson, Thomas Laurent, Martin Schmitz, Mile Sikic
2022	J	`jnl`	Learning to Untangle Genome Assembly with Graph Convolutional Networks. CoRR Lovro Vrcek, Xavier Bresson, Thomas Laurent, Martin Schmitz, Mile Sikic
2021	J	`jnl`	Time- and memory-efficient genome assembly with Raven. Nat. Comput. Sci. Robert Vaser, Mile Sikic
2020	J	`jnl`	A step towards neural genome assembly. CoRR Lovro Vrcek, Petar Velickovic, Mile Sikic
2019	—	`conf`	Approaches to metagenomic classification and assembly. MIPRO Josip Maric, Mile Sikic
2019	J	`jnl`	Disentangling Sources of Influence in Online Social Networks. IEEE Access Matija Piskorec, Tomislav Smuc, Mile Sikic
2019	J	`jnl`	MinCall - MinION end2end convolutional deep learning basecaller. CoRR Neven Miculinic, Marko Ratkovic, Mile Sikic
2019	J	`jnl`	Read classification using semi-supervised deep learning. CoRR Tomislav Sebrek, Jan Tomljanovic, Josip Krapac, Mile Sikic
2019	C	`conf`	Yet another de novo genome assembler. ISPA Robert Vaser, Mile Sikic
2018	J	`jnl`	Disentangling sources of influence in online social networks. CoRR Matija Piskorec, Tomislav Smuc, Mile Sikic
2018	J	`jnl`	Evaluation of tools for long read RNA-seq splice-aware alignment. Bioinform. Kresimir Krizanovic, Amina Echchiki, Julien Roux, Mile Sikic
2018	Misc	`conf`	Fast and Simple Algorithms for Computing both LCS PSC Filip Pavetic, Ivan Katanic, Gustav Matula, Goran Zuzic, Mile Sikic
2017	J	`jnl`	Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance. Bioinform. Martin Sosic, Mile Sikic
2017	J	`jnl`	Fast and simple algorithms for computing both $LCS_{k}$ and $LCS_{k+}$. CoRR Filip Pavetic, Ivan Katanic, Gustav Matula, Goran Zuzic, Mile Sikic
2017	—	`conf`	Modeling Peer and External Influence in Online Social Networks: Case of 2013 Referendum in Croatia. COMPLEX NETWORKS Matija Piskorec, Nino Antulov-Fantulin, Iva Miholic, Tomislav Smuc, Mile Sikic
2017	Misc	`conf`	Trade-offs in Query and Target Indexing for the Selection of Candidates in Protein Homology Searches. PSC Strahil Ristov, Robert Vaser, Mile Sikic
2017	—	`conf`	Unsupervised Learning of Sequencing Read Types. ICCBB Jan Tomljanovic, Tomislav Sebrek, Mile Sikic
2016	J	`jnl`	Evaluation of hybrid and non-hybrid methods for Bioinform. Ivan Sovic, Kresimir Krizanovic, Karolj Skala, Mile Sikic
2016	J	`jnl`	Modeling peer and external influence in online social networks. CoRR Matija Piskorec, Nino Antulov-Fantulin, Iva Miholic, Tomislav Smuc, Mile Sikic
2016	J	`jnl`	SWORD - a highly efficient protein database search. Bioinform. Robert Vaser, Dario Pavlovic, Mile Sikic
2015	C	`conf`	Some new results on assessment of Q-gram filter efficiency. ISPA Andrej Novák, Kresimir Krizanovic, Alen Lancic, Mile Sikic
2014	J	`jnl`	$LCSk$++: Practical similarity metric for long strings. CoRR Filip Pavetic, Goran Zuzic, Mile Sikic
2014	J	`jnl`	Detectability limits of epidemic sources in networks. CoRR Nino Antulov-Fantulin, Alen Lancic, Tomislav Smuc, Hrvoje Stefancic, Mile Sikic
2014	J	`jnl`	ExoLocator - an online view into genetic makeup of vertebrate proteins. Nucleic Acids Res. Aik Aun Khoo, Mario Ogrizek-Tomas, Ana Bulovic, Matija Korpar, Ece Gürler, Ivan Slijepcevic, Mile Sikic, Ivana Mihalek
2014	—	`conf`	Statistical Inference Framework for Source Detection of Contagion Processes on Arbitrary Network Structures. SASO Workshops Nino Antulov-Fantulin, Alen Lancic, Hrvoje Stefancic, Mile Sikic, Tomislav Smuc
2013	J	`jnl`	FastSIR algorithm: A fast algorithm for the simulation of the epidemic spread in large networks by using the susceptible-infected-recovered compartment model. Inf. Sci. Nino Antulov-Fantulin, Alen Lancic, Hrvoje Stefancic, Mile Sikic
2013	J	`jnl`	SW# - GPU enabled exact alignments on genome scale CoRR Matija Korpar, Mile Sikic
2013	J	`jnl`	SW#-GPU-enabled exact alignments on genome scale. Bioinform. Matija Korpar, Mile Sikic
2013	J	`jnl`	Statistical inference framework for source detection of contagion processes on arbitrary network structures CoRR Nino Antulov-Fantulin, Alen Lancic, Hrvoje Stefancic, Mile Sikic, Tomislav Smuc
2012	J	`jnl`	BioMe: biologically relevant metals. Nucleic Acids Res. Alan Tus, Alen Rakipovic, Goran Peretin, Sanja Tomic, Mile Sikic
2012	—	`conf`	CUDA implementation of the algorithm for simulating the epidemic spreading over large networks. MIPRO Matija Sosic, Mile Sikic
2012	J	`jnl`	FastSIR Algorithm: A Fast Algorithm for simulation of epidemic spread in large networks by using SIR compartment model CoRR Nino Antulov-Fantulin, Alen Lancic, Hrvoje Stefancic, Mile Sikic
2011	J	`jnl`	Epidemic centrality and the underestimated epidemic impact on network peripheral nodes CoRR Mile Sikic, Alen Lancic, Nino Antulov-Fantulin, Hrvoje Stefancic
2009	J	`jnl`	Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests. PLoS Comput. Biol. Mile Sikic, Sanja Tomic, Kristian Vlahovicek
2008	—	`conf`	Comparison of the RADIUS and Diameter protocols. ITI Mladen Stanke, Mile Sikic