Mikhail P. Ponomarenko

25 papers A 1C 1Journal 20Unranked 3
YearRankTypeTitle / Venue / Authors
2015 J jnl
Sequence-based prediction of transcription upregulation by auxin in plants.
J. Bioinform. Comput. Biol.
Petr M. Ponomarenko, Mikhail P. Ponomarenko
2013 J jnl
How Multiple Auxin Responsive Elements May Interact in plant promoters: a Reverse Problem solution.
J. Bioinform. Comput. Biol.
Victoria V. Mironova, Nadezda A. Omelyanchuk, Maria S. Savina, Petr M. Ponomarenko, Mikhail P. Ponomarenko, Vitali A. Likhoshvai, Nikolay A. Kolchanov
2010 J jnl
Snps in the HIV-1 TATA Box and the Aids pandemic.
J. Bioinform. Comput. Biol.
Valentin V. Suslov, Petr M. Ponomarenko, Vadim M. Efimov, Ludmila K. Savinkova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov
2005 J jnl
Mining Genome Variation to Associate Genetic Disease with Mutation Alterations and Ortho/Paralogous Polimorphysms in Transcription Factor Binding Site.
Int. J. Artif. Intell. Tools
Julia V. Ponomarenko, Galina Orlova, Tatyana I. Merkulova, Gennady V. Vasiliev, Mikhail P. Ponomarenko
2003 J jnl
rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation.
Nucleic Acids Res.
Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Anatoly S. Frolov, Vadim P. Valuev, Mikhail P. Ponomarenko
2002 J jnl
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro.
Nucleic Acids Res.
Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov
2002 J jnl
Mining DNA sequences to predict sites which mutations cause genetic diseases.
Knowl. Based Syst.
Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Mikhail P. Ponomarenko
2002 J jnl
SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data.
Nucleic Acids Res.
Julia V. Ponomarenko, Galina Orlova, Anatoly S. Frolov, Mikhail S. Gelfand, Mikhail P. Ponomarenko
2001 J jnl
ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another.
Nucleic Acids Res.
Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, Akinori Sarai
2001 C conf
Mining Genome Variation to Associate Disease with Transcription Factor Binding Site Alteration.
BIBE
Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Elena Gorshkova, Oleg N. Fokin, Mikhail P. Ponomarenko
2001 — conf
Mining SNPs for Associating Disease Penetration with Transcription Factor Binding Site Alterations.
German Conference on Bioinformatics
Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Mikhail P. Ponomarenko
2001 J jnl
rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations.
Nucleic Acids Res.
Julia V. Ponomarenko, Tatyana I. Merkulova, Gennady V. Vasiliev, Zoya B. Levashova, Galina Orlova, Sergey V. Lavryushev, Oleg N. Fokin, Mikhail P. Ponomarenko, Anatoly S. Frolov, Akinori Sarai
2000 J jnl
Methods for integration of heterogeneous information resources in molecular biology in the digital library GeneExpress.
Program. Comput. Softw.
Fedor A. Kolpakov, N. L. Podkolodnyi, Sergey V. Lavryushev, Dmitry A. Grigorovich, Mikhail P. Ponomarenko, Nikolay A. Kolchanov
2000 J jnl
SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation.
Nucleic Acids Res.
Julia V. Ponomarenko, Galina Orlova, Mikhail P. Ponomarenko, Sergey V. Lavryushev, Anatoly S. Frolov, Svetlana V. Zybova, Nikolay A. Kolchanov
1999 J jnl
Conformational and physicochemical DNA features specific for transcription factor binding sites.
Bioinform.
Julia V. Ponomarenko, Mikhail P. Ponomarenko, Anatoly S. Frolov, Denis G. Vorobiev, G. Christian Overton, Nikolay A. Kolchanov
1999 J jnl
Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.
Bioinform.
Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay L. Podkolodny, Ludmila K. Savinkova, Nikolay A. Kolchanov, G. Christian Overton
1999 J jnl
Integrated databases and computer systems for studying eukaryotic gene expression.
Bioinform.
Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, Fedor A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Yury V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton
1999 J jnl
Nucleosomal DNA property database.
Bioinform.
Victor G. Levitsky, Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay A. Kolchanov
1999 J jnl
Oligonucleotide frequency matrices addressed to recognizing functional DNA sites.
Bioinform.
Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Olga A. Podkolodnaya, Denis G. Vorobiev, Nikolay A. Kolchanov, G. Christian Overton
1999 J jnl
Prediction of eukaryotic mRNA translational properties.
Bioinform.
Alexey V. Kochetov, Mikhail P. Ponomarenko, Anatoly S. Frolov, L. L. Kisselev, Nikolay A. Kolchanov
1998 A conf
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
ISMB
Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Yury V. Kondrakhin, Anatoly S. Frolov, Fedor A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer
1997 J jnl
Generating Programs for Predicting the Activity of Functional Sites.
J. Comput. Biol.
Mikhail P. Ponomarenko, A. N. Kolchanova, Nikolay A. Kolchanov
1997 — conf
Identification of the significant conformational features of functional sites in B-DNA.
German Conference on Bioinformatics
Mikhail P. Ponomarenko, Julia V. Ponomarenko, Alexander E. Kel, Nikolay A. Kolchanov, N. Karas, Edgar Wingender, Heinz Sklenar
1996 — conf
TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences.
German Conference on Bioinformatics - Selected Papers
Alexander E. Kel, O. V. Kel, Oleg V. Vishnevsky, Mikhail P. Ponomarenko, I. V. Ischenko, Holger Karas, Edgar Wingender, Nikolay A. Kolchanov, Heinz Sklenar
1993 J jnl
SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites.
Comput. Appl. Biosci.
Alexander E. Kel, Mikhail P. Ponomarenko, E. A. Likhachev, Yuri L. Orlov, I. V. Ischenko, Luciano Milanesi, Nikolay A. Kolchanov