Mikhail Karasikov

13 papers A 1B 2Journal 8Unranked 1
YearRankTypeTitle / Venue / Authors
2025 — conf
Training State-of-the-Art Pathology Foundation Models with Orders of Magnitude Less Data.
MICCAI (8)
Mikhail Karasikov, Joost van Doorn, Nicolas Känzig, Melis Erdal Cesur, Hugo Mark Horlings, Robert Berke, Fei Tang, Sebastian Otálora
2025 J jnl
Training state-of-the-art pathology foundation models with orders of magnitude less data.
CoRR
Mikhail Karasikov, Joost van Doorn, Nicolas Känzig, Melis Erdal Cesur, Hugo Mark Horlings, Robert B. West, Fei Tang, Sebastian Otálora
2024 J jnl
Label-guided seed-chain-extend alignment on annotated De Bruijn graphs.
Bioinform.
Harun Mustafa, Mikhail Karasikov, Nika Mansouri-Ghiasi, Gunnar Rätsch, André Kahles
2024 J jnl
Towards Large-Scale Training of Pathology Foundation Models.
CoRR
kaiko ai, Nanne Aben, Edwin D. de Jong, Ioannis Gatopoulos, Nicolas Känzig, Mikhail Karasikov, Axel Lagré, Roman Moser, Joost van Doorn, Fei Tang
2023 — —
Scalable Annotated Genome Graphs for Representing Sequence Data.
Mikhail Karasikov
2022 B conf
Lossless Indexing with Counting de Bruijn Graphs.
RECOMB
Mikhail Karasikov, Harun Mustafa, Gunnar Rätsch, André Kahles
2021 J jnl
Topology-based sparsification of graph annotations.
Bioinform.
Daniel Danciu, Mikhail Karasikov, Harun Mustafa, André Kahles, Gunnar Rätsch
2020 A conf
Communication-Efficient Jaccard similarity for High-Performance Distributed Genome Comparisons.
IPDPS
Maciej Besta, Raghavendra Kanakagiri, Harun Mustafa, Mikhail Karasikov, Gunnar Rätsch, Torsten Hoefler, Edgar Solomonik
2020 J jnl
Sparse Binary Relation Representations for Genome Graph Annotation.
J. Comput. Biol.
Mikhail Karasikov, Harun Mustafa, Amir Joudaki, Sara Javadzadeh-No, Gunnar Rätsch, André Kahles
2019 J jnl
Communication-Efficient Jaccard Similarity for High-Performance Distributed Genome Comparisons.
CoRR
Maciej Besta, Raghavendra Kanakagiri, Harun Mustafa, Mikhail Karasikov, Gunnar Rätsch, Torsten Hoefler, Edgar Solomonik
2019 J jnl
Dynamic compression schemes for graph coloring.
Bioinform.
Harun Mustafa, Ingo Schilken, Mikhail Karasikov, Carsten Eickhoff, Gunnar Rätsch, André Kahles
2019 J jnl
Smooth orientation-dependent scoring function for coarse-grained protein quality assessment.
Bioinform.
Mikhail Karasikov, Guillaume Pagès, Sergei Grudinin
2019 B conf
Sparse Binary Relation Representations for Genome Graph Annotation.
RECOMB
Mikhail Karasikov, Harun Mustafa, Amir Joudaki, Sara Javadzadeh-No, Gunnar Rätsch, André Kahles