Mikhail G. Dozmorov

29 papers Journal 29
YearRankTypeTitle / Venue / Authors
2026 J jnl
Beyond blacklists: a critical assessment of exclusion set generation strategies and alternative approaches.
Bioinform.
Brydon P. G. Wall, Jonathan D. Ogata, My Nguyen, Amy L. Olex, Konstantinos V. Floros, Anthony C. Faber, Joseph L. McClay, J. Chuck Harrell, Mikhail G. Dozmorov
2024 J jnl
Machine and deep learning methods for predicting 3D genome organization.
CoRR
Brydon P. G. Wall, My Nguyen, J. Chuck Harrell, Mikhail G. Dozmorov
2023 J jnl
bootRanges: flexible generation of null sets of genomic ranges for hypothesis testing.
Bioinform.
Wancen Mu, Eric S. Davis, Stuart Lee, Mikhail G. Dozmorov, Douglas H. Phanstiel, Michael I. Love
2023 J jnl
excluderanges: exclusion sets for T2T-CHM13, GRCm39, and other genome assemblies.
Bioinform.
Jonathan D. Ogata, Wancen Mu, Eric S. Davis, Bingjie Xue, J. Chuck Harrell, Nathan C. Sheffield, Douglas H. Phanstiel, Michael I. Love, Mikhail G. Dozmorov
2023 J jnl
matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling.
Bioinform.
Eric S. Davis, Wancen Mu, Stuart Lee, Mikhail G. Dozmorov, Michael I. Love, Douglas H. Phanstiel
2022 J jnl
preciseTAD: a transfer learning framework for 3D domain boundary prediction at base-pair resolution.
Bioinform.
Spiro C. Stilianoudakis, Maggie A. Marshall, Mikhail G. Dozmorov
2020 J jnl
A method for estimating coherence of molecular mechanisms in major human disease and traits.
BMC Bioinform.
Mikhail G. Dozmorov, Kellen Garrison Cresswell, Silviu-Alin Bacanu, Carl F. Craver, Mark Reimers, Kenneth S. Kendler
2020 J jnl
Correction to: SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering.
BMC Bioinform.
Kellen Garrison Cresswell, John C. Stansfield, Mikhail G. Dozmorov
2020 J jnl
SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering.
BMC Bioinform.
Kellen Garrison Cresswell, John C. Stansfield, Mikhail G. Dozmorov
2019 J jnl
Disease classification: from phenotypic similarity to integrative genomics and beyond.
Briefings Bioinform.
Mikhail G. Dozmorov
2019 J jnl
multiHiCcompare: joint normalization and comparative analysis of complex Hi-C experiments.
Bioinform.
John C. Stansfield, Kellen Garrison Cresswell, Mikhail G. Dozmorov
2018 J jnl
HiCcompare: an R-package for joint normalization and comparison of HI-C datasets.
BMC Bioinform.
John C. Stansfield, Kellen Garrison Cresswell, Vladimir I. Vladimirov, Mikhail G. Dozmorov
2017 J jnl
Epigenomic annotation-based interpretation of genomic data: from enrichment analysis to machine learning.
Bioinform.
Mikhail G. Dozmorov
2017 J jnl
Proceedings of the 2017 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinform.
Jonathan D. Wren, Mikhail G. Dozmorov, Inimary T. Toby, Bindu Nanduri, Ramin Homayouni, Prashanti Manda, Shraddha Thakkar
2016 J jnl
GenomeRunner web server: regulatory similarity and differences define the functional impact of SNP sets.
Bioinform.
Mikhail G. Dozmorov, Lukas R. Cara, Cory B. Giles, Jonathan D. Wren
2016 J jnl
Improving sensitivity of linear regression-based cell type-specific differential expression deconvolution with per-gene vs. global significance threshold.
BMC Bioinform.
Edmund R. Glass, Mikhail G. Dozmorov
2016 J jnl
Proceedings of the 2016 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinform.
Jonathan D. Wren, Inimary T. Toby, Huxiao Hong, Bindu Nanduri, Rakesh Kaundal, Mikhail G. Dozmorov, Shraddha Thakkar
2015 J jnl
Detrimental effects of duplicate reads and low complexity regions on RNA- and ChIP-seq data.
BMC Bioinform.
Mikhail G. Dozmorov, Indra Adrianto, Cory B. Giles, Edmund R. Glass, Stuart B. Glenn, Courtney Montgomery, Kathy L. Sivils, Lorin E. Olson, Tomoaki Iwayama, Willard M. Freeman, Christopher J. Lessard, Jonathan D. Wren
2014 J jnl
Proceedings of the 2014 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinform.
Jonathan D. Wren, Mikhail G. Dozmorov, Dennis Burian, Andy D. Perkins, Chaoyang Zhang, Peter Hoyt, Rakesh Kaundal
2013 J jnl
Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinform.
Jonathan D. Wren, Mikhail G. Dozmorov, Dennis Burian, Rakesh Kaundal, Andy D. Perkins, Edward J. Perkins, Doris M. Kupfer, Gordon K. Springer
2013 J jnl
Systematic classification of non-coding RNAs by epigenomic similarity.
BMC Bioinform.
Mikhail G. Dozmorov, Cory B. Giles, Kristi A. Koelsch, Jonathan D. Wren
2013 J jnl
mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis.
BMC Bioinform.
Cory B. Giles, Reshmi Girijadevi, Mikhail G. Dozmorov, Jonathan D. Wren
2012 J jnl
Genome
Bioinform.
Mikhail G. Dozmorov, Lukas R. Cara, Cory B. Giles, Jonathan D. Wren
2012 J jnl
Proceedings of the 2012 MidSouth computational biology and bioinformatics society (MCBIOS) conference.
BMC Bioinform.
Jonathan D. Wren, Mikhail G. Dozmorov, Dennis Burian, Rakesh Kaundal, Susan Bridges, Doris M. Kupfer
2011 J jnl
High-throughput processing and normalization of one-color microarrays for transcriptional meta-analyses.
BMC Bioinform.
Mikhail G. Dozmorov, Jonathan D. Wren
2011 J jnl
Predicting gene ontology from a global meta-analysis of 1-color microarray experiments.
BMC Bioinform.
Mikhail G. Dozmorov, Cory B. Giles, Jonathan D. Wren
2011 J jnl
Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinform.
Jonathan D. Wren, Doris M. Kupfer, Edward J. Perkins, Susan Bridges, Stephen Winters-Hilt, Mikhail G. Dozmorov, Ulisses M. Braga-Neto
2008 J jnl
From microarray to biology: an integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells.
BMC Bioinform.
Mikhail G. Dozmorov, Kimberly D. Kyker, Paul J. Hauser, Ricardo Saban, David D. Buethe, Igor Dozmorov, Michael Centola, Daniel J. Culkin, Robert E. Hurst
2007 J jnl
Systems biology approach for mapping the response of human urothelial cells to infection by
BMC Bioinform.
Mikhail G. Dozmorov, Kimberly D. Kyker, Ricardo Saban, Nathan Shankar, Arto S. Baghdayan, Michael Centola, Robert E. Hurst