Mikel Hernaez

44 papers A* 1B 6C 1Journal 30Unranked 6
YearRankTypeTitle / Venue / Authors
2025 A* conf
Interpretable Causal Representation Learning for Biological Data in the Pathway Space.
ICLR
Jesus de la Fuente Cedeño, Robert Lehmann, Carlos Ruiz-Arenas, Jan Voges, Irene Marín-Goñi, Xabier Martinez de Morentin, David Gomez-Cabrero, Idoia Ochoa, Jesper Tegnér, Vincenzo Lagani, Mikel Hernaez
2025 J jnl
Interpretable Causal Representation Learning for Biological Data in the Pathway Space.
CoRR
Jesus de la Fuente, Robert Lehmann, Carlos Ruiz-Arenas, Jan Voges, Irene Marín-Goñi, Xabier Martinez de Morentin, David Gomez-Cabrero, Idoia Ochoa, Jesper Tegnér, Vincenzo Lagani, Mikel Hernaez
2025 J jnl
Towards a more inductive world for drug repurposing approaches.
Nat. Mac. Intell.
Jesus de la Fuente Cedeño, Guillermo Serrano, Uxía Veleiro, Mikel Casals, Laura Vera, Marija Pizurica, Nuria Gómez-Cebrián, Leonor Puchades-Carrasco, Antonio Pineda-Lucena, Idoia Ochoa, Silve Vicent, Olivier Gevaert, Mikel Hernaez
2024 J jnl
Ge N Nius : an ultrafast drug-target interaction inference method based on graph neural networks.
Bioinform.
Uxía Veleiro, Jesus de la Fuente, Guillermo Serrano, Marija Pizurica, Mikel Casals, Antonio Pineda-Lucena, Silve Vicent, Idoia Ochoa, Olivier Gevaert, Mikel Hernaez
2024 — conf
Use of Beacon v2 for Improving Genomics Based Research in a Clinical Setting.
MIE
Daniel Naro, Jaime Delgado, Silvia Llorente, Mikel Hernaez
2023 J jnl
Towards a more inductive world for drug repurposing approaches.
CoRR
Jesus de la Fuente Cedeño, Guillermo Serrano, Uxía Veleiro, Mikel Casals, Laura Vera, Marija Pizurica, Antonio Pineda-Lucena, Idoia Ochoa, Silve Vicent, Olivier Gevaert, Mikel Hernaez
2022 J jnl
JIND: joint integration and discrimination for automated single-cell annotation.
Bioinform.
Mohit Goyal, Guillermo Serrano, Josepmaria Argemi, Ilan Shomorony, Mikel Hernaez, Idoia Ochoa
2021 J jnl
An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data.
Proc. IEEE
Jan Voges, Mikel Hernaez, Marco Mattavelli, Jörn Ostermann
2021 J jnl
Towards scalable genomic data access.
Nat. Comput. Sci.
Mikel Hernaez
2020 J jnl
CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores.
J. Bioinform. Comput. Biol.
Albert No, Mikel Hernaez, Idoia Ochoa
2020 J jnl
Comparison of single and module-based methods for modeling gene regulatory networks.
Bioinform.
Mikel Hernaez, Charles Blatti, Olivier Gevaert
2020 J jnl
GABAC: an arithmetic coding solution for genomic data.
Bioinform.
Jan Voges, Tom Paridaens, Fabian Müntefering, Liudmila S. Mainzer, Brian Bliss, Mingyu Yang, Idoia Ochoa, Jan Fostier, Jörn Ostermann, Mikel Hernaez
2020 J jnl
GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form.
Bioinform.
Qingxi Meng, Idoia Ochoa, Mikel Hernaez
2019 B conf
AliCo: A New Efficient Representation for SAM Files.
DCC
Idoia Ochoa, Hongyi Li, Florian Baumgarte, Charles Hergenrother, Jan Voges, Mikel Hernaez
2019 J jnl
SPRING: a next-generation compressor for FASTQ data.
Bioinform.
Shubham Chandak, Kedar Tatwawadi, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman
2018 J jnl
CALQ: compression of quality values of aligned sequencing data.
Bioinform.
Jan Voges, Jörn Ostermann, Mikel Hernaez
2018 J jnl
FaStore: a space-saving solution for raw sequencing data.
Bioinform.
Lukasz Roguski, Idoia Ochoa, Mikel Hernaez, Sebastian Deorowicz
2018 J jnl
QVZ: lossy compression of quality values.
Bioinform.
Greg Malysa, Mikel Hernaez, Idoia Ochoa, Milind Rao, Karthik Ganesan, Tsachy Weissman
2017 J jnl
Effect of lossy compression of quality scores on variant calling.
Briefings Bioinform.
Idoia Ochoa, Mikel Hernaez, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley
2017 B conf
GeneComp, a New Reference-Based Compressor for SAM Files.
DCC
Reggy Long, Mikel Hernaez, Idoia Ochoa, Tsachy Weissman
2016 B conf
A Cluster-Based Approach to Compression of Quality Scores.
DCC
Mikel Hernaez, Idoia Ochoa, Tsachy Weissman
2016 B conf
An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values.
DCC
Claudio Alberti, Noah M. Daniels, Mikel Hernaez, Jan Voges, Rachel L. Goldfeder, Ana A. Hernandez-Lopez, Marco Mattavelli, Bonnie Berger
2016 B conf
CROMqs: an infinitesimal successive refinement lossy compressor for the quality scores.
ITW
Idoia Ochoa, Albert No, Mikel Hernaez, Tsachy Weissman
2016 J jnl
Comment on: 'ERGC: an efficient referential genome compression algorithm'.
Bioinform.
Sebastian Deorowicz, Szymon Grabowski, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman
2016 B conf
Denoising of Quality Scores for Boosted Inference and Reduced Storage.
DCC
Idoia Ochoa, Mikel Hernaez, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley
2016 J jnl
GTRAC: fast retrieval from compressed collections of genomic variants.
Bioinform.
Kedar Tatwawadi, Mikel Hernaez, Idoia Ochoa, Tsachy Weissman
2015 J jnl
Design of a new scheme for multi-hop wireless networks using decode-and-forward strategy.
EURASIP J. Wirel. Commun. Netw.
Iker Alustiza, Mikel Hernaez, Pedro M. Crespo
2015 J jnl
QVZ: lossy compression of quality values.
Bioinform.
Greg Malysa, Mikel Hernaez, Idoia Ochoa, Milind Rao, Karthik Ganesan, Tsachy Weissman
2015 J jnl
iDoComp: a compression scheme for assembled genomes.
Bioinform.
Idoia Ochoa, Mikel Hernaez, Tsachy Weissman
2014 J jnl
Aligned genomic data compression via improved modeling.
J. Bioinform. Comput. Biol.
Idoia Ochoa, Mikel Hernaez, Tsachy Weissman
2013 — conf
A Decode-and-Forward Scheme for Multihop Wireless Networks.
VTC Fall
Mikel Hernaez, Iker Alustiza, Pedro M. Crespo, Javier Del Ser
2013 — conf
Communication Services Empowered with a Classical Chaos Based Cryptosystem.
Financial Cryptography
Gerard Vidal, Mikel Hernaez
2013 J jnl
On the Design of a Novel Joint Network-Channel Coding Scheme for the Multiple Access Relay Channel.
IEEE J. Sel. Areas Commun.
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser
2013 C conf
Teaching information theory via a simulation tool for communications systems.
EDUCON
Iker Alustiza, Mikel Hernaez, Xabier Insausti, Pedro M. Crespo
2012 J jnl
A Flexible Channel Coding Approach for Short-Length Codewords
CoRR
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser
2012 J jnl
Flexible Channel Coding Approach for Short-Length Codewords.
IEEE Commun. Lett.
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser
2012 J jnl
On the Design of a Novel Joint Network-Channel Coding Scheme for the Multiple Access Relay Channel
CoRR
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser
2011 — conf
A Novel Scheme for Message-Forwarding in Multi-Hop Ad-Hoc Wireless Networks.
VTC Spring
Mikel Hernaez, Pedro M. Crespo
2011 — conf
Joint Non-Binary LDPC-BICM and Network Coding with Iterative Decoding for the Multiple Access Relay Channel.
VTC Spring
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser
2010 J jnl
Erratum to "serially-concatenated LDGM codes for correlated sources over Gaussian broadcast channels".
IEEE Commun. Lett.
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser, Javier Garcia-Frías
2010 — conf
Joint Turbo Coding and Source-Controlled Modulation of Cycle-Stationary Sources in the Bandwidth-Limited Regime.
MOBILIGHT
Idoia Ochoa, Pedro M. Crespo, Javier Del Ser, Mikel Hernaez
2010 J jnl
LDPC Codes for Non-Uniform Memoryless Sources and Unequal Energy Allocation.
IEEE Commun. Lett.
Idoia Ochoa, Pedro M. Crespo, Mikel Hernaez
2010 J jnl
Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime.
IEEE Commun. Lett.
Idoia Ochoa, Pedro M. Crespo, Javier Del Ser, Mikel Hernaez
2009 J jnl
Serially-concatenated LDGM codes for correlated sources over gaussian broadcast channels.
IEEE Commun. Lett.
Mikel Hernaez, Pedro M. Crespo, Javier Del Ser, Javier Garcia-Frías