Mikaël Salson

19 papers C 2Misc 1Journal 15
YearRankTypeTitle / Venue / Authors
2026 J jnl
Vigemers: on the number of
CoRR
Florian Ingels, Antoine Limasset, Camille Marchet, Mikaël Salson
2025 J jnl
<tt>CREMSA</tt>: compressed indexing of (ultra) large multiple sequence alignments.
Bioinform.
Mikaël Salson, Arthur Boddaert, Awa Bousso Gueye, Laurent Bulteau, Yohan Hernandez-Courbevoie, Camille Marchet, Nan Pan, Sebastian Will, Yann Ponty
2025 C conf
REINDEER2: Practical Abundance Index at Scale.
SPIRE
Yohan Hernandez-Courbevoie, Mikaël Salson, Chloé Bessière, Haoliang Xue, Daniel Gautheret, Camille Marchet, Antoine Limasset
2024 J jnl
On the number of
CoRR
Florian Ingels, Camille Marchet, Mikaël Salson
2023 — book
Méthodes sans alignement et indexation pour l'analyse de données nucléiques massives.
Mikaël Salson
2022 J jnl
Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r.
BMC Bioinform.
Augustin Boudry, Sasha Darmon, Nicolas Duployez, Martin Figeac, Sandrine Geffroy, Maxime Bucci, Karine Celli-Lebras, Matthieu Duchmann, Romane Joudinaud, Laurène Fenwarth, Olivier Nibourel, Laure Goursaud, Raphael Itzykson, Hervé Dombret, Mathilde Hunault, Claude Preudhomme, Mikaël Salson
2022 J jnl
Publisher Correction: Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r.
BMC Bioinform.
Augustin Boudry, Sasha Darmon, Nicolas Duployez, Martin Figeac, Sandrine Geffroy, Maxime Bucci, Karine Celli-Lebras, Matthieu Duchmann, Romane Joudinaud, Laurène Fenwarth, Olivier Nibourel, Laure Goursaud, Raphael Itzykson, Hervé Dombret, Mathilde Hunault, Claude Preudhomme, Mikaël Salson
2020 J jnl
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets.
Bioinform.
Camille Marchet, Zamin Iqbal, Daniel Gautheret, Mikaël Salson, Rayan Chikhi
2018 J jnl
Indexing labeled sequences.
PeerJ Comput. Sci.
Tatiana Rocher, Mathieu Giraud, Mikaël Salson
2017 J jnl
SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines.
BMC Bioinform.
Jerome Audoux, Mikaël Salson, Christophe F. Grosset, Sacha Beaumeunier, Jean-Marc Holder, Therese Commes, Nicolas Philippe
2016 J jnl
Approximate search of short patterns with high error rates using the 01
J. Discrete Algorithms
Christophe Vroland, Mikaël Salson, Sébastien Bini, Hélène Touzet
2016 J jnl
Efficient dynamic range minimum query.
Theor. Comput. Sci.
Alice Héliou, Martine Léonard, Laurent Mouchard, Mikaël Salson
2014 C conf
Lossless Seeds for Searching Short Patterns with High Error Rates.
IWOCA
Christophe Vroland, Mikaël Salson, Hélène Touzet
2012 J jnl
A Scalable Indexing Solution to Mine Huge Genomic Sequence Collections.
ERCIM News
Eric Rivals, Nicolas Philippe, Mikaël Salson, Martine Léonard, Therese Commes, Thierry Lecroq
2012 J jnl
On the number of elements to reorder when updating a suffix array.
J. Discrete Algorithms
Martine Léonard, Laurent Mouchard, Mikaël Salson
2011 J jnl
Querying large read collections in main memory: a versatile data structure.
BMC Bioinform.
Nicolas Philippe, Mikaël Salson, Thierry Lecroq, Martine Léonard, Therese Commes, Eric Rivals
2010 J jnl
Dynamic extended suffix arrays.
J. Discrete Algorithms
Mikaël Salson, Thierry Lecroq, Martine Léonard, Laurent Mouchard
2009 J jnl
A four-stage algorithm for updating a Burrows-Wheeler transform.
Theor. Comput. Sci.
Mikaël Salson, Thierry Lecroq, Martine Léonard, Laurent Mouchard
2008 Misc conf
Dynamic Burrows-Wheeler Transform.
PSC
Mikaël Salson, Thierry Lecroq, Martine Léonard, Laurent Mouchard