Mihaela Pertea

13 papers C 2Journal 11
YearRankTypeTitle / Venue / Authors
2023 J jnl
Investigating open reading frames in known and novel transcripts using ORFanage.
Nat. Comput. Sci.
Ales Varabyou, Beril Erdogdu, Steven L. Salzberg, Mihaela Pertea
2022 J jnl
Improved transcriptome assembly using a hybrid of long and short reads with StringTie.
PLoS Comput. Biol.
Alaina Shumate, Brandon M. Wong, Geo Pertea, Mihaela Pertea
2021 J jnl
TieBrush: an efficient method for aggregating and summarizing mapped reads across large datasets.
Bioinform.
Ales Varabyou, Geo Pertea, Christopher Pockrandt, Mihaela Pertea
2011 J jnl
Detection of Lineage-Specific Evolutionary Changes among Primate Species.
BMC Bioinform.
Mihaela Pertea, Geo Pertea, Steven L. Salzberg
2009 J jnl
OperonDB: a comprehensive database of predicted operons in microbial genomes.
Nucleic Acids Res.
Mihaela Pertea, Kunmi Ayanbule, Megan Smedinghoff, Steven L. Salzberg
2008 J jnl
Problems and Solutions in Biological Sequence Analysis, Mark Borodovsky, Svetlana Ekisheva.
Briefings Bioinform.
Mihaela Pertea
2007 J jnl
A computational survey of candidate exonic splicing enhancer motifs in the model plant
BMC Bioinform.
Mihaela Pertea, Stephen M. Mount, Steven L. Salzberg
2007 C conf
Using Protein Domains to Improve the Accuracy of
WABI
Mihaela Pertea, Steven Salzberg
2005 J jnl
Efficient decoding algorithms for generalized hidden Markov model gene finders.
BMC Bioinform.
William H. Majoros, Mihaela Pertea, Arthur L. Delcher, Steven Salzberg
2005 J jnl
Efficient implementation of a generalized pair hidden Markov model for comparative gene finding.
Bioinform.
William H. Majoros, Mihaela Pertea, Sihaela Salzberg
2004 J jnl
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.
Bioinform.
William H. Majoros, Mihaela Pertea, Steven Salzberg
2003 J jnl
GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders.
Nucleic Acids Res.
William H. Majoros, Mihaela Pertea, Corina Antonescu, Steven Salzberg
2002 C conf
A Method to Improve the Performance of Translation Start Site Detection and Its Application for Gene Finding.
WABI
Mihaela Pertea, Steven Salzberg