Miguel Reboiro-Jato

54 papers C 1Misc 17Journal 32Unranked 4
YearRankTypeTitle / Venue / Authors
2026 J jnl
PIBAdb: a public cohort of multimodal colonoscopy videos and images including polyps with histological information.
Comput. Methods Programs Biomed.
Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Fernando Campos-Tato, Jesús Herrero, Manuel Puga, Laura Rivas, Eloy Sánchez, Águeda Iglesias, Laura Codesido, Ástrid Irene Díez-Martín, Pedro Davila-Piñón, Joaquín Cubiella, Florentino Fdez-Riverola, Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato
2024 J jnl
Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites.
J. Integr. Bioinform.
Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira
2024 J jnl
SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines.
BMC Bioinform.
Miguel Reboiro-Jato, Daniel Pérez-Rodríguez, Miguel José Da Silva, David Vila-Fernández, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández
2023 Misc conf
Auto-phylo: A Pipeline Maker for Phylogenetic Studies.
PACBB
Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira
2023 J jnl
On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3.
J. Integr. Bioinform.
André D. Sousa, Sara Rocha, Jorge Vieira, Miguel Reboiro-Jato, Hugo López-Fernández, Cristina P. Vieira
2023 J jnl
PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics data.
Nucleic Acids Res.
María José Jiménez-Santos, Alba Nogueira-Rodríguez, Elena Piñeiro-Yáñez, Hugo López-Fernández, Santiago García-Martín, Paula Gómez-Plana, Miguel Reboiro-Jato, Gonzalo Gómez-López, Daniel Glez-Peña, Fátima Al-Shahrour
2022 Misc conf
EvoPPI 2: A Web and Local Platform for the Comparison of Protein-Protein Interaction Data from Multiple Sources from the Same and Distinct Species.
PACBB
Miguel Reboiro-Jato, Jorge Vieira, Sara Rocha, André D. Sousa, Hugo López-Fernández, Cristina P. Vieira
2022 J jnl
Real-time polyp detection model using convolutional neural networks.
Neural Comput. Appl.
Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Fernando Campos-Tato, Jesús Herrero, Manuel Puga, David Remedios, Laura Rivas, Eloy Sánchez, Águeda Iglesias, Joaquín Cubiella, Florentino Fdez-Riverola, Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña
2022 J jnl
SEDA: A Desktop Tool Suite for FASTA Files Processing.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2021 J jnl
Compi: a framework for portable and reproducible pipelines.
PeerJ Comput. Sci.
Hugo López-Fernández, Osvaldo Graña-Castro, Alba Nogueira-Rodríguez, Miguel Reboiro-Jato, Daniel Glez-Peña
2021 J jnl
DREIMT: a drug repositioning database and prioritization tool for immunomodulation.
Bioinform.
Kevin Troulé, Hugo López-Fernández, Santiago García-Martín, Miguel Reboiro-Jato, Carlos Carretero-Puche, Jordi Martorell-Marugan, Guillermo Martín-Serrano, Pedro Carmona-Saez, Daniel Glez-Peña, Fátima Al-Shahrour, Gonzalo Gómez-López
2021 J jnl
Deep Neural Networks approaches for detecting and classifying colorectal polyps.
Neurocomputing
Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Hugo López-Fernández, Águeda Iglesias, Joaquín Cubiella, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Daniel Glez-Peña
2021 Misc conf
The pegi3s Bioinformatics Docker Images Project.
PACBB
Hugo López-Fernández, Pedro Ferreira, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2020 Misc conf
Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines.
PACBB
Alba Nogueira-Rodríguez, Hugo López-Fernández, Osvaldo Graña-Castro, Miguel Reboiro-Jato, Daniel Glez-Peña
2020 Misc conf
Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen.
PACBB
Hugo López-Fernández, Cristina P. Vieira, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Jorge Vieira
2019 Misc conf
Inferring Positive Selection in Large Viral Datasets.
PACBB
Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2018 Misc conf
A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees.
PACBB
Hugo López-Fernández, Pedro Duque, Sílvia Henriques, Noé Vázquez, Florentino Fdez-Riverola, Cristina P. Vieira, Miguel Reboiro-Jato, Jorge Vieira
2018 Misc conf
EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species.
PACBB
Noé Vázquez, Sara Rocha, Hugo López-Fernández, André Torres, Rui Camacho, Florentino Fdez-Riverola, Jorge Vieira, Cristina P. Vieira, Miguel Reboiro-Jato
2018 J jnl
S2P: A software tool to quickly carry out reproducible biomedical research projects involving 2D-gel and MALDI-TOF MS protein data.
Comput. Methods Programs Biomed.
Hugo López-Fernández, Jose E. Araújo, Susana Jorge, Daniel Glez-Peña, Miguel Reboiro-Jato, Hugo Miguel Santos, Florentino Fdez-Riverola, José L. Capelo
2017 Misc conf
Automated Collection and Sharing of Adaptive Amino Acid Changes Data.
PACBB
Noé Vázquez, Cristina P. Vieira, Bárbara S. R. Amorim, André Torres, Hugo López-Fernández, Florentino Fdez-Riverola, José L. R. Sousa, Miguel Reboiro-Jato, Jorge Vieira
2017 Misc conf
S2P: A Desktop Application for Fast and Easy Processing of 2D-Gel and MALDI-Based Mass Spectrometry Protein Data.
PACBB
Hugo López-Fernández, Jose E. Araújo, Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, José Luis Capelo-Martínez
2016 J jnl
LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data.
J. Cheminformatics
Hugo López-Fernández, Gustavo de S. Pessôa, Marco A. Z. Arruda, José Luis Capelo-Martínez, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato
2015 J jnl
Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery.
BMC Bioinform.
Hugo López-Fernández, Hugo Miguel Santos, José L. Capelo, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato
2014 J jnl
A comprehensive analysis about the influence of low-level preprocessing techniques on mass spectrometry data for sample classification.
Int. J. Data Min. Bioinform.
Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, Florentino Fernández Riverola
2014 J jnl
A novel ensemble of classifiers that use biological relevant gene sets for microarray classification.
Appl. Soft Comput.
Miguel Reboiro-Jato, Fernando Díaz, Daniel Glez-Peña, Florentino Fdez-Riverola
2014 J jnl
Web scraping technologies in an API world.
Briefings Bioinform.
Daniel Glez-Peña, Anália Lourenço, Hugo López-Fernández, Miguel Reboiro-Jato, Florentino Fdez-Riverola
2014 J jnl
geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification.
BMC Bioinform.
Miguel Reboiro-Jato, Joel Arrais, José Luís Oliveira, Florentino Fdez-Riverola
2013 Misc conf
A Workflow for the Application of Biclustering to Mass Spectrometry Data.
PACBB
Hugo López-Fernández, Miguel Reboiro-Jato, Sara C. Madeira, Rubén López-Cortés, J. D. Nunes-Miranda, Hugo Miguel Santos, Florentino Fdez-Riverola, Daniel Glez-Peña
2013 J jnl
BioAnnote: A software platform for annotating biomedical documents with application in medical learning environments.
Comput. Methods Programs Biomed.
Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, Fernando Aparicio, Diego Gachet, Manuel Buenaga, Florentino Fdez-Riverola
2013 J jnl
genEnsemble: A new model for the combination of classifiers and integration of biological knowledge applied to genomic data.
Expert Syst. Appl.
Miguel Reboiro-Jato, Rosalía Laza, Hugo López-Fernández, Daniel Glez-Peña, Fernando Díaz, Florentino Fdez-Riverola
2012 J jnl
A JAVA application framework for scientific software development.
Softw. Pract. Exp.
Florentino Fdez-Riverola, Daniel Glez-Peña, Hugo López-Fernández, Miguel Reboiro-Jato, José Ramón Méndez
2012 J jnl
A novel ensemble approach for multicategory classification of DNA microarray data using biological relevant gene sets.
Int. J. Data Min. Bioinform.
Miguel Reboiro-Jato, Daniel Glez-Peña, Fernando Díaz, Florentino Fdez-Riverola
2012 J jnl
ADOPS - Automatic Detection Of Positively Selected Sites.
J. Integr. Bioinform.
David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Cristina P. Vieira, Nuno A. Fonseca, Jorge Vieira
2012 Misc conf
Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies.
PACBB
Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola
2012 J jnl
Grindstone4Spam: An optimization toolkit for boosting e-mail classification.
J. Syst. Softw.
José Ramón Méndez, Miguel Reboiro-Jato, Fernando Díaz, Eduardo Díaz, Florentino Fdez-Riverola
2012 Misc conf
On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites.
PACBB
David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Nuno A. Fonseca, Jorge Vieira
2011 Misc conf
An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies.
PACBB
Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David G. Pisano, Gonzalo Gómez-López
2011 Misc conf
Assessing the Impact of Class-Imbalanced Data for Classifying Relevant/Irrelevant Medline Documents.
PACBB
Reyes Pavón, Rosalía Laza, Miguel Reboiro-Jato, Florentino Fdez-Riverola
2011 Misc conf
Assessing the Suitability of MeSH Ontology for Classifying Medline Documents.
PACBB
Rosalía Laza, Reyes Pavón, Miguel Reboiro-Jato, Florentino Fdez-Riverola
2011 Misc conf
Building Proteomics Applications with the AIBench Application Framework.
PACBB
Miguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José L. Capelo, Florentino Fdez-Riverola
2011 J jnl
Evaluating the effect of unbalanced data in biomedical document classification.
J. Integr. Bioinform.
Rosalía Laza, Reyes Pavón, Miguel Reboiro-Jato, Florentino Fdez-Riverola
2011 J jnl
PileLine: a toolbox to handle genome position information in next-generation sequencing studies.
BMC Bioinform.
Daniel Glez-Peña, Gonzalo Gómez-López, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David G. Pisano
2011 J jnl
PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies.
Nucleic Acids Res.
Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola
2011 J jnl
Rapid development of proteomic applications with the AIBench framework.
J. Integr. Bioinform.
Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José Luis Capelo-Martínez, Florentino Fdez-Riverola
2011 J jnl
Using inductive learning to assess compound feed production in cooperative poultry farms.
Expert Syst. Appl.
Miguel Reboiro-Jato, Julia Glez-Dopazo, D. Glez, Rosalía Laza, Juan F. Gálvez, Reyes Pavón, Daniel Glez-Peña, Florentino Fdez-Riverola
2010 — conf
A Comparative Study of Microarray Data Classification Methods Based on Ensemble Biological Relevant Gene Sets.
IWPACBB
Miguel Reboiro-Jato, Daniel Glez-Peña, Juan F. Gálvez, Rosalía Laza, Fernando Díaz, Florentino Fdez-Riverola
2010 J jnl
A robust algorithm for forming note complexes.
Inteligencia Artif.
Silvana Gómez-Meire, Miguel Reboiro-Jato, Carlos H. Fajardo Toro, David N. Olivieri, Florentino Fdez-Riverola
2010 J jnl
AIBench: A rapid application development framework for translational research in biomedicine.
Comput. Methods Programs Biomed.
Daniel Glez-Peña, Miguel Reboiro-Jato, Paulo Maia, Miguel Rocha, Fernando Díaz, Florentino Fdez-Riverola
2010 J jnl
ALTER: program-oriented conversion of DNA and protein alignments.
Nucleic Acids Res.
Daniel Glez-Peña, Daniel Gómez-Blanco, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David Posada
2010 — conf
An Experimental Evaluation of a Novel Stochastic Method for Iterative Class Discovery on Real Microarray Datasets.
IWPACBB
Héctor Gómez, Daniel Glez-Peña, Miguel Reboiro-Jato, Reyes Pavón, Fernando Díaz, Florentino Fdez-Riverola
2010 C conf
Incorporating biological knowledge to microarray data classification through genomic data fusion.
FUSION
Daniel Glez-Peña, Marta Pérez-Fernández, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Marta Pérez, Fernando Díaz
2010 — conf
Multi-agent System for Mass Spectrometry Analysis.
PAAMS (Special Sessions and Workshops)
Miguel Reboiro-Jato, Daniel Glez-Peña, Hugo Miguel Santos, Mário S. Diniz, Carlos Lodeiro, José L. Capelo, Florentino Fdez-Riverola
2010 — conf
PathAgent: Multi-agent System for Updated Pathway Information Integration.
PAAMS (Special Sessions and Workshops)
Miguel Reboiro-Jato, Daniel Glez-Peña, Rubén Domínguez, Gonzalo Gómez-López, David G. Pisano, Celso Campos, Florentino Fdez-Riverola
2010 J jnl
PathJam: a new service for integrating biological pathway information.
J. Integr. Bioinform.
Daniel Glez-Peña, Miguel Reboiro-Jato, Rubén Domínguez, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola