Miguel O. Bernabeu

60 papers Misc 2Journal 40Unranked 18

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Comparative evaluation of training strategies using partially labelled datasets for segmentation of white matter hyperintensities and stroke lesions in FLAIR MRI. CoRR Jesse Phitidis, Alison Q. Smithard, William Whiteley, Joanna M. Wardlaw, Miguel O. Bernabeu, Maria del C. Valdés Hernández
2025	J	`jnl`	A mixed methods formative evaluation of the United Kingdom National Health Service Artificial Intelligence Lab. npj Digit. Medicine Kathrin M. Cresswell, Robin Williams, Sheena Dungey, Stuart Anderson, Miguel O. Bernabeu, Hajar Mozaffar, Xiao Yang, Varun Sai, Sara Bea, Sally Eason
2025	J	`jnl`	Automated neuroradiological support systems for multiple cerebrovascular disease markers - A systematic review and meta-analysis. Comput. Methods Programs Biomed. Jesse Phitidis, Alison Q. O'Neil, William Whiteley, Beatrice Alex, Joanna M. Wardlaw, Miguel O. Bernabeu, Maria del C. Valdés Hernández
2025	—	`conf`	Robust Windowing Harmonisation for Improved Cross-Scanner Generalisation of White Matter Hypoattenuation Segmentation in Brain CT Clinical Scans. AIiH (2) Nada Alamoudi, Maria del C. Valdés Hernández, Sohan Seth, Joanna M. Wardlaw, Miguel O. Bernabeu
2025	J	`jnl`	SpinDoctor-IVIM: A virtual imaging framework for intravoxel incoherent motion MRI. Medical Image Anal. Mojtaba Lashgari, Zheyi Yang, Miguel O. Bernabeu, Jing-Rebecca Li, Alejandro F. Frangi
2025	J	`jnl`	Uncertainty quantification for White Matter Hyperintensity segmentation detects silent failures and improves automated Fazekas quantification. Medical Image Anal. Ben Philps, Maria del C. Valdés Hernández, Chen Qin, Una Clancy, Eleni Sakka, Susana Muñoz Maniega, Mark E. Bastin, Angela C. C. Jochems, Joanna M. Wardlaw, Miguel O. Bernabeu
2024	J	`jnl`	Applicability of oculomics for individual risk prediction: Repeatability and robustness of retinal Fractal Dimension using DART and AutoMorph. CoRR Justin Engelmann, Diana Moukaddem, Lucas Gago, Niall C. Strang, Miguel O. Bernabeu
2024	J	`jnl`	Automated neuroradiological support systems for multiple cerebrovascular disease markers - A systematic review and meta-analysis. CoRR Jesse Phitidis, Alison Q. O'Neil, William Whiteley, Beatrice Alex, Joanna M. Wardlaw, Miguel O. Bernabeu, Maria del C. Valdés Hernández
2024	—	`conf`	Comparison of Classical and Deep Learning-Based Feature Representations for Age-Related Macular Degeneration. MICAD Parsa Sinichi, Miguel O. Bernabeu, Malihe Javidi
2024	J	`jnl`	Domain-specific augmentations with resolution agnostic self-attention mechanism improves choroid segmentation in optical coherence tomography images. CoRR Jamie Burke, Justin Engelmann, Charlene Hamid, Diana Moukaddem, Dan Pugh, Neeraj Dhaun, Amos J. Storkey, Niall C. Strang, Stuart King, Tom J. MacGillivray, Miguel O. Bernabeu, Ian J. C. MacCormick
2024	—	`conf`	Stochastic Uncertainty Quantification Techniques Fail to Account for Inter-analyst Variability in White Matter Hyperintensity Segmentation. MIUA (1) Ben Philps, Maria del C. Valdés Hernández, Susana Muñoz Maniega, Mark E. Bastin, Eleni Sakka, Una Clancy, Joanna M. Wardlaw, Miguel O. Bernabeu
2024	J	`jnl`	Training a high-performance retinal foundation model with half-the-data and 400 times less compute. CoRR Justin Engelmann, Miguel O. Bernabeu
2024	J	`jnl`	Uncertainty quantification for White Matter Hyperintensity segmentation detects silent failures and improves automated Fazekas quantification. CoRR Ben Philps, Maria del C. Valdés Hernández, Chen Qin, Una Clancy, Eleni Sakka, Susana Muñoz Maniega, Mark E. Bastin, Angela C. C. Jochems, Joanna M. Wardlaw, Miguel O. Bernabeu, Alzheimer's Disease Neuroimaging Initiative
2023	—	`conf`	Associations Between Retinal Microvasculature Changes and Gray Matter Volume in a Mid-Life Cohort at Risk of Developing Alzheimer's Disease. OMIA@MICCAI Darwon Rashid, Ylenia Giarratano, Charlene Hamid, Thomas J. MacGillivray, Graciela Terrera Muniz, Craig Ritchie, Baljean Dhillon, Megan Reid-Schachter, Audrey Low, Maria-Eleni Dounavi, John T. O'Brien, Miguel O. Bernabeu
2023	J	`jnl`	Choroidalyzer: An open-source, end-to-end pipeline for choroidal analysis in optical coherence tomography. CoRR Justin Engelmann, Jamie Burke, Charlene Hamid, Megan Reid-Schachter, Dan Pugh, Neeraj Dhaun, Diana Moukaddem, Lyle Gray, Niall C. Strang, Paul McGraw, Amos J. Storkey, Paul J. Steptoe, Stuart King, Tom J. MacGillivray, Miguel O. Bernabeu, Ian J. C. MacCormick
2023	—	`conf`	Data Efficiency of Segment Anything Model for Optic Disc and Cup Segmentation. MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI Fabian S. L. Yii, Thomas J. MacGillivray, Miguel O. Bernabeu
2023	—	`conf`	Early Experiences of Integrating an Artificial Intelligence-Based Diagnostic Decision Support System into Radiology Settings: A Qualitative Study. EFMI-STC Nusa Faric, Sue Hinder, Robin Williams, Rishi Ramaesh, Miguel O. Bernabeu, Edwin van Beek, Kathrin M. Cresswell
2023	J	`jnl`	Early experiences of integrating an artificial intelligence-based diagnostic decision support system into radiology settings: a qualitative study. J. Am. Medical Informatics Assoc. Nusa Faric, Sue Hinder, Robin Williams, Rishi Ramaesh, Miguel O. Bernabeu, Edwin van Beek, Kathrin M. Cresswell
2023	J	`jnl`	Efficient and fully-automatic retinal choroid segmentation in OCT through DL-based distillation of a hand-crafted pipeline. CoRR Jamie Burke, Justin Engelmann, Charlene Hamid, Megan Reid-Schachter, Tom Pearson, Dan Pugh, Neeraj Dhaun, Stuart King, Tom J. MacGillivray, Miguel O. Bernabeu, Amos J. Storkey, Ian J. C. MacCormick
2023	J	`jnl`	Mathematical models of developmental vascular remodelling: A review. PLoS Comput. Biol. Jessica R. Crawshaw, Jennifer A. Flegg, Miguel O. Bernabeu, James M. Osborne
2023	—	`conf`	QuickQual: Lightweight, Convenient Retinal Image Quality Scoring with Off-the-Shelf Pretrained Models. OMIA@MICCAI Justin Engelmann, Amos J. Storkey, Miguel O. Bernabeu
2023	J	`jnl`	QuickQual: Lightweight, convenient retinal image quality scoring with off-the-shelf pretrained models. CoRR Justin Engelmann, Amos J. Storkey, Miguel O. Bernabeu
2023	—	`conf`	Segmentation of White Matter Hyperintensities and Ischaemic Stroke Lesions in Structural MRI. MIUA Jesse Phitidis, Alison Q. O'Neil, Stewart Wiseman, David Alexander Dickie, Eleni Sakka, Agniete Kampaite, William Whiteley, Miguel O. Bernabeu, Beatrice Alex, Joanna M. Wardlaw, Maria del C. Valdés Hernández
2022	—	`conf`	Analysing Optical Coherence Tomography Angiography of Mid-Life Persons at Risk of Developing Alzheimer's Disease Later in Life. OMIA@MICCAI Darwon Rashid, Ylenia Giarratano, Charlene Hamid, Thomas J. MacGillivray, Graciela Terrera Muniz, Craig Ritchie, Baljean Dhillon, Miguel O. Bernabeu
2022	J	`jnl`	Detecting multiple retinal diseases in ultra-widefield fundus imaging and data-driven identification of informative regions with deep learning. Nat. Mac. Intell. Justin Engelmann, Alice D. McTrusty, Ian J. C. MacCormick, Emma Pead, Amos J. Storkey, Miguel O. Bernabeu
2022	J	`jnl`	Detection of multiple retinal diseases in ultra-widefield fundus images using deep learning: data-driven identification of relevant regions. CoRR Justin Engelmann, Alice D. McTrusty, Ian J. C. MacCormick, Emma Pead, Amos J. Storkey, Miguel O. Bernabeu
2022	—	`conf`	Rethinking Retinal Image Quality: Treating Quality Threshold as a Tunable Hyperparameter. OMIA@MICCAI Fabian S. L. Yii, Raman Dutt, Thomas J. MacGillivray, Baljean Dhillon, Miguel O. Bernabeu, Niall C. Strang
2022	—	`conf`	Robust and Efficient Computation of Retinal Fractal Dimension Through Deep Approximation. OMIA@MICCAI Justin Engelmann, Ana Villaplana-Velasco, Amos J. Storkey, Miguel O. Bernabeu
2022	J	`jnl`	Robust and efficient computation of retinal fractal dimension through deep approximation. CoRR Justin Engelmann, Ana Villaplana-Velasco, Amos J. Storkey, Miguel O. Bernabeu
2021	J	`jnl`	Euler Characteristic Surfaces. CoRR Gabriele Beltramo, Rayna Andreeva, Ylenia Giarratano, Miguel O. Bernabeu, Rik Sarkar, Primoz Skraba
2021	J	`jnl`	Global explainability in aligned image modalities. CoRR Justin Engelmann, Amos J. Storkey, Miguel O. Bernabeu
2021	J	`jnl`	On the preservation of vessel bifurcations during flow-mediated angiogenic remodelling. PLoS Comput. Biol. Lowell T. Edgar, Claudio A. Franco, Holger Gerhardt, Miguel O. Bernabeu
2021	—	`conf`	Reproducibility of Retinal Vascular Phenotypes Obtained with Optical Coherence Tomography Angiography: Importance of Vessel Segmentation. MIUA Darwon Rashid, Sophie Cai, Ylenia Giarratano, Calum D. Gray, Charlene Hamid, Dilraj S. Grewal, Tom J. MacGillivray, Sharon Fekrat, Cason B. Robbins, Srinath Soundararajan, Justin P. Ma, Miguel O. Bernabeu
2020	—	`conf`	A Framework for the Discovery of Retinal Biomarkers in Optical Coherence Tomography Angiography (OCTA). OMIA@MICCAI Ylenia Giarratano, Alisa Pavel, Jie Lian, Rayna Andreeva, Alessandro Fontanella, Rik Sarkar, Laura J. Reid, Shareen Forbes, Dan Pugh, Tariq E. Farrah, Neeraj Dhaun, Baljean Dhillon, Thomas J. MacGillivray, Miguel O. Bernabeu
2020	J	`jnl`	Chaste: Cancer, Heart and Soft Tissue Environment. J. Open Source Softw. Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan
2020	—	`conf`	DR Detection Using Optical Coherence Tomography Angiography (OCTA): A Transfer Learning Approach with Robustness Analysis. OMIA@MICCAI Rayna Andreeva, Alessandro Fontanella, Ylenia Giarratano, Miguel O. Bernabeu
2019	J	`jnl`	Automated and Network Structure Preserving Segmentation of Optical Coherence Tomography Angiograms. CoRR Ylenia Giarratano, Eleonora Bianchi, Calum D. Gray, Andrew Morris, Tom J. MacGillivray, Baljean Dhillon, Miguel O. Bernabeu
2018	—	`conf`	A Fully Discrete Open Source Framework for the Simulation of Vascular Remodelling. EMBC James M. Osborne, Miguel O. Bernabeu
2015	J	`jnl`	An automated multiscale ensemble simulation approach for vascular blood flow. CoRR Mohamed A. Itani, Ulf D. Schiller, Sebastian Schmieschek, James Hetherington, Miguel O. Bernabeu, Hoskote Chandrashekar, Fergus Robertson, Peter V. Coveney, Derek Groen
2015	J	`jnl`	An automated multiscale ensemble simulation approach for vascular blood flow. J. Comput. Sci. Mohamed A. Itani, Ulf D. Schiller, Sebastian Schmieschek, James Hetherington, Miguel O. Bernabeu, Hoskote Chandrashekar, Fergus Robertson, Peter V. Coveney, Derek Groen
2015	—	`conf`	Characterization of parafoveal hemodynamics associated with diabetic retinopathy with adaptive optics scanning laser ophthalmoscopy and computational fluid dynamics. EMBC Miguel O. Bernabeu, Yang Lu, Jan Lammer, Lloyd Paul Aiello, Peter V. Coveney, Jennifer K. Sun
2015	J	`jnl`	Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. PLoS Comput. Biol. Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas, Maria Bruna, Ben Calderhead, Jonathan Cooper, Alexander G. Fletcher, Derek Groen, Bram Kuijper, Joanna Lewis, Greg J. McInerny, Timo Minssen, James M. Osborne, Verena Paulitschke, Joe Pitt-Francis, Jelena Todoric, Christian A. Yates, David Gavaghan, Charlotte M. Deane
2014	J	`jnl`	Chaste: A case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation. Int. J. High Perform. Comput. Appl. Miguel O. Bernabeu, James Southern, Nicholas Wilson, Peter E. Strazdins, Jonathan Cooper, Joe Pitt-Francis
2014	J	`jnl`	Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane
2014	—	`conf`	Weighted Decomposition in High-Performance Lattice-Boltzmann Simulations: Are Some Lattice Sites More Equal than Others? EASC Derek Groen, David Abou Chacra, Rupert W. Nash, Jirí Jaros, Miguel O. Bernabeu, Peter V. Coveney
2014	J	`jnl`	Weighted decomposition in high-performance lattice-Boltzmann simulations: are some lattice sites more equal than others? CoRR Derek Groen, David Abou Chacra, Rupert W. Nash, Jirí Jaros, Miguel O. Bernabeu, Peter V. Coveney
2013	J	`jnl`	Analysing and modelling the performance of the HemeLB lattice-Boltzmann simulation environment. J. Comput. Sci. Derek Groen, James Hetherington, Hywel B. Carver, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney
2013	J	`jnl`	Chaste: An Open Source C++ Library for Computational Physiology and Biology. PLoS Comput. Biol. Gary R. Mirams, Christopher J. Arthurs, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher, Daniel G. Harvey, Megan E. Marsh, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, James Southern, Nejib Zemzemi, David Gavaghan
2013	J	`jnl`	Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis. CoRR Miguel O. Bernabeu, Claudio A. Franco, Martin Jones, Jens H. Nielsen, Timm Krüger, Rupert W. Nash, Derek Groen, James Hetherington, Holger Gerhardt, Peter V. Coveney
2012	J	`jnl`	Analyzing and Modeling the Performance of the HemeLB Lattice-Boltzmann Simulation Environment CoRR Derek Groen, James Hetherington, Hywel B. Carver, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney
2012	J	`jnl`	Choice of blood rheology model has minor impact on computational assessment of shear stress mediated vascular risk CoRR Miguel O. Bernabeu, Rupert W. Nash, Derek Groen, Hywel B. Carver, James Hetherington, Timm Krüger, Peter V. Coveney
2012	J	`jnl`	Coalesced communication: a design pattern for complex parallel scientific software CoRR Hywel B. Carver, Derek Groen, James Hetherington, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney
2012	J	`jnl`	Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations CoRR Derek Groen, Joris Borgdorff, Carles Bona-Casas, James Hetherington, Rupert W. Nash, Stefan J. Zasada, Ilya Saverchenko, Mariusz Mamonski, Krzysztof Kurowski, Miguel O. Bernabeu, Alfons G. Hoekstra, Peter V. Coveney
2011	Misc	`conf`	Scalable parallel preconditioners for an open source cardiac electrophysiology simulation package. ICCS Miguel O. Bernabeu, David Kay
2011	—	`conf`	Simulating Drug-Induced Effects on the Heart: From Ion Channel to Body Surface Electrocardiogram. FIMH Nejib Zemzemi, Miguel O. Bernabeu, Javier Saiz, Blanca Rodríguez
2010	Misc	`conf`	Anisotropic mesh adaptivity for cardiac electrophysiology. ICCS James Southern, Gerard J. Gorman, M. D. Piggott, Patrick E. Farrell, Miguel O. Bernabeu, Joe Pitt-Francis
2010	J	`jnl`	Simulating cardiac electrophysiology using anisotropic mesh adaptivity. J. Comput. Sci. James Southern, Gerard J. Gorman, M. D. Piggott, Patrick E. Farrell, Miguel O. Bernabeu, Joe Pitt-Francis
2010	J	`jnl`	Stimulus Protocol Determines the Most Computationally Efficient Preconditioner for the Bidomain Equations. IEEE Trans. Biomed. Eng. Miguel O. Bernabeu, Pras Pathmanathan, Joe Pitt-Francis, David Kay
2009	J	`jnl`	Chaste: A test-driven approach to software development for biological modelling. Comput. Phys. Commun. Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, Alex Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David Gavaghan
2007	J	`jnl`	Robust Parallel Implementation of a Lanczos-based Algorithm for an Structured Electromagnetic Eigenvalue Problem. Scalable Comput. Pract. Exp. Miguel O. Bernabeu, Mariam Taroncher, Víctor M. García, Ana Vidal