Miguel Machuqueiro

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2026 J jnl
Reinforcement-guided generative protein language models enable de novo design of highly diverse AAV capsids.
CoRR
Lucas Ferraz, Ana F. Rodrigues, Pedro Giesteira Cotovio, Mafalda Ventura, Gabriela Silva, Ana Sofia Coroadinha, Miguel Machuqueiro, Catia Pesquita
2024 J jnl
High Charge Density in Peptide Dendrimers is Required to Destabilize Membranes: Insights into Endosome Evasion.
J. Chem. Inf. Model.
Filipe E. P. Rodrigues, Tamis Darbre, Miguel Machuqueiro
2024 J jnl
Is There a Functional Role for the Knotted Topology in Protein UCH-L1?
J. Chem. Inf. Model.
Sara G. F. Ferreira, Manoj K. Sriramoju, Shang-Te Danny Hsu, Patrícia F. N. Faísca, Miguel Machuqueiro
2024 J jnl
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J. Chem. Inf. Model.
Carlos A. V. Barreto, João N. M. Vitorino, Pedro B. P. S. Reis, Miguel Machuqueiro, Irina S. Moreira
2023 J jnl
Arginine Residues Modulate the Membrane Interactions of pHLIP Peptides.
J. Chem. Inf. Model.
Tomás F. D. Silva, Hannah Visca, Craig Klumpp, Oleg A. Andreev, Yana K. Reshetnyak, Miguel Machuqueiro
2023 J jnl
Interfacial Dynamics and Growth Modes of β
J. Chem. Inf. Model.
Nuno F. B. Oliveira, Filipe E. P. Rodrigues, João N. M. Vitorino, Patrícia F. N. Faísca, Miguel Machuqueiro
2022 J jnl
Novel US-CpHMD Protocol to Study the Protonation-Dependent Mechanism of the ATP/ADP Carrier.
J. Chem. Inf. Model.
Nuno F. B. Oliveira, Miguel Machuqueiro
2022 J jnl
Optimization of an
J. Chem. Inf. Model.
Pedro R. Magalhães, Pedro B. P. S. Reis, Diogo Vila-Viçosa, Miguel Machuqueiro, Bruno L. Victor
2021 J jnl
pKPDB: a protein data bank extension database of pKa and pI theoretical values.
Bioinform.
Pedro B. P. S. Reis, Djork-Arné Clevert, Miguel Machuqueiro
2020 J jnl
PypKa: A Flexible Python Module for Poisson-Boltzmann-Based pKa Calculations.
J. Chem. Inf. Model.
Pedro B. P. S. Reis, Diogo Vila-Viçosa, Walter Rocchia, Miguel Machuqueiro
2015 J jnl
Correction to "Structural Effects of pH and Deacylation on Surfactant Protein C in an Organic Solvent Mixture: A Constant-pH MD Study".
J. Chem. Inf. Model.
Catarina A. Carvalheda, Sara R. R. Campos, Miguel Machuqueiro, António M. Baptista
2014 J jnl
A Simulated Intermediate State for Folding and Aggregation Provides Insights into ΔN6 β
PLoS Comput. Biol.
Sílvia G. Estácio, Heinrich Krobath, Diogo Vila-Viçosa, Miguel Machuqueiro, Eugene I. Shakhnovich, Patrícia F. N. Faísca
2013 J jnl
Structural Effects of pH and Deacylation on Surfactant Protein C in an Organic Solvent Mixture: A Constant-pH MD Study.
J. Chem. Inf. Model.
Catarina A. Carvalheda, Sara R. R. Campos, Miguel Machuqueiro, António M. Baptista