Michele Ceccarelli

80 papers A 1B 3C 2Misc 3Journal 39Unranked 32
YearRankTypeTitle / Venue / Authors
2025 — conf
PRESTIGE-ST: Patch Resolution and Encoder STrategies for Inference of Gene Expression from Spatial Transcriptomics.
MCHM@MM
Maninder Kaur, Amit Kumar, Michele Ceccarelli, Raghvendra Mall, Sukrit Gupta
2024 — conf
A Preliminary Study on the Creation of a Covert Channel with HTTP Headers.
ITASEC
Stefano Bistarelli, Michele Ceccarelli, Chiara Luchini, Ivan Mercanti, Francesco Santini
2024 J jnl
Quantifying intra-tumoral genetic heterogeneity of glioblastoma toward precision medicine using MRI and a data-inclusive machine learning algorithm.
CoRR
Lujia Wang, Hairong Wang, Fulvio D'Angelo, Lee Curtin, Christopher P. Sereduk, Gustavo De Leon, Kyle W. Singleton, Javier Urcuyo, Andrea Hawkins-Daarud, Pamela R. Jackson, Chandan Krishna, Richard S. Zimmerman, Devi P. Patra, Bernard R. Bendok, Kris A. Smith, Peter Nakaji, Kliment Donev, Leslie C. Baxter, Maciej M. Mrugala, Michele Ceccarelli, Antonio Iavarone, Kristin R. Swanson, Nhan L. Tran, Leland S. Hu, Jing Li
2023 B conf
A Survey of Steganography Tools at Layers 2-4 and HTTP.
ARES
Stefano Bistarelli, Michele Ceccarelli, Chiara Luchini, Ivan Mercanti, Francesco Santini
2023 J jnl
MOViDA: multiomics visible drug activity prediction with a biologically informed neural network model.
Bioinform.
Luigi Ferraro, Giovanni Scala, Luigi Cerulo, Emanuele Carosati, Michele Ceccarelli
2021 J jnl
A review of COVID-19 biomarkers and drug targets: resources and tools.
Briefings Bioinform.
Francesca P. Caruso, Giovanni Scala, Luigi Cerulo, Michele Ceccarelli
2021 J jnl
Adaptive one-class Gaussian processes allow accurate prioritization of oncology drug targets.
Bioinform.
Antonio de Falco, Zoltán Dezsö, Francesco Ceccarelli, Luigi Cerulo, Angelo Ciaramella, Michele Ceccarelli
2021 J jnl
Network-based identification of key master regulators associated with an immune-silent cancer phenotype.
Briefings Bioinform.
Raghvendra Mall, Mohamad Saad, Jessica Roelands, Darawan Rinchai, Khalid Kunji, Hossam Almeer, Wouter Hendrickx, Francesco M. Marincola, Michele Ceccarelli, Davide Bedognetti
2021 J jnl
Structural Model for Recruitment of RIT1 to the LZTR1 E3 Ligase: Evidences from an Integrated Computational Approach.
J. Chem. Inf. Model.
Antonella Paladino, Fulvio D'Angelo, Teresa Maria Rosaria Noviello, Antonio Iavarone, Michele Ceccarelli
2020 J jnl
Deep learning predicts short non-coding RNA functions from only raw sequence data.
PLoS Comput. Biol.
Teresa Maria Rosaria Noviello, Francesco Ceccarelli, Michele Ceccarelli, Luigi Cerulo
2020 J jnl
Machine learning prediction of oncology drug targets based on protein and network properties.
BMC Bioinform.
Zoltán Dezsö, Michele Ceccarelli
2020 J jnl
Preface: In memory of Alfredo Petrosino.
Pattern Recognit. Lett.
Michele Ceccarelli
2018 J jnl
An unsupervised disease module identification technique in biological networks using novel quality metric based on connectivity, conductance and modularity.
F1000Research
Raghvendra Mall, Ehsan Ullah, Khalid Kunji, Michele Ceccarelli, Halima Bensmail
2018 J jnl
Detection of long non-coding RNA homology, a comparative study on alignment and alignment-free metrics.
BMC Bioinform.
Teresa Maria Rosaria Noviello, Antonella Di Liddo, Giovanna M. M. Ventola, Antonietta Spagnuolo, Salvatore D'Aniello, Michele Ceccarelli, Luigi Cerulo
2018 J jnl
TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data.
F1000Research
Tiago Chedraoui Silva, Antonio Colaprico, Catharina Olsen, Tathiane M. Malta, Gianluca Bontempi, Michele Ceccarelli, Benjamin P. Berman, Houtan Noushmehr
2017 — conf
An adaptive refinement for community detection methods for disease module identification in biological networks using novel metric based on connectivity, conductance & modularity.
BIBM
Raghvendra Mall, Ehsan Ullah, Khalid Kunji, Halima Bensmail, Michele Ceccarelli
2017 J jnl
Detection of statistically significant network changes in complex biological networks.
BMC Syst. Biol.
Raghvendra Mall, Luigi Cerulo, Halima Bensmail, Antonio Iavarone, Michele Ceccarelli
2017 — conf
Differential Community Detection in Paired Biological Networks.
BCB
Raghvendra Mall, Ehsan Ullah, Khalid Kunji, Fulvio D'Angelo, Halima Bensmail, Michele Ceccarelli
2017 J jnl
Identification of long non-coding transcripts with feature selection: a comparative study.
BMC Bioinform.
Giovanna M. M. Ventola, Teresa Maria Rosaria Noviello, Salvatore D'Aniello, Antonietta Spagnuolo, Michele Ceccarelli, Luigi Cerulo
2015 — conf
Infer Gene Regulatory Networks from Time Series Data with Probabilistic Model Checking.
FormaliSE@ICSE
Michele Ceccarelli, Luigi Cerulo, Giuseppe De Ruvo, Vittoria Nardone, Antonella Santone
2015 J jnl
Irish: A Hidden Markov Model to detect coded information islands in free text.
Sci. Comput. Program.
Luigi Cerulo, Massimiliano Di Penta, Alberto Bacchelli, Michele Ceccarelli, Gerardo Canfora
2015 J jnl
VEGAWES: variational segmentation on whole exome sequencing for copy number detection.
BMC Bioinform.
Samreen Anjum, Sandro Morganella, Fulvio D'Angelo, Antonio Iavarone, Michele Ceccarelli
2013 C conf
A Hidden Markov Model to detect coded information islands in free text.
SCAM
Luigi Cerulo, Michele Ceccarelli, Massimiliano Di Penta, Gerardo Canfora
2013 J jnl
A negative selection heuristic to predict new transcriptional targets.
BMC Bioinform.
Luigi Cerulo, Vincenzo Paduano, Pietro Zoppoli, Michele Ceccarelli
2013 — conf
An Approach to Identify miRNA Associated with Cancer Altered Pathways.
ICIAP Workshops
Giovanna Maria Ventola, Antonio Colaprico, Fulvio D'Angelo, Vittorio Colantuoni, Giuseppe Viglietto, Luigi Cerulo, Michele Ceccarelli
2013 — conf
Infer gene regulatory networks from time series data with formal methods.
BIBM
Michele Ceccarelli, Luigi Cerulo, Antonella Santone
2012 J jnl
VegaMC: a R/bioconductor package for fast downstream analysis of large array comparative genomic hybridization datasets.
Bioinform.
Sandro Morganella, Michele Ceccarelli
2011 — conf
An Algorithm for Finding Gene Signatures Supervised by Survival Time Data.
KES (1)
Stefano Maria Pagnotta, Michele Ceccarelli
2011 J jnl
Finding recurrent copy number alterations preserving within-sample homogeneity.
Bioinform.
Sandro Morganella, Stefano Maria Pagnotta, Michele Ceccarelli
2011 — conf
How Long Does a Bug Survive? An Empirical Study.
WCRE
Gerardo Canfora, Michele Ceccarelli, Luigi Cerulo, Massimiliano Di Penta
2010 — conf
An eclectic approach for change impact analysis.
ICSE (2)
Michele Ceccarelli, Luigi Cerulo, Gerardo Canfora, Massimiliano Di Penta
2010 J jnl
Automatic Detection and Surface Measurements of Micronucleus by a Computer Vision Approach.
IEEE Trans. Instrum. Meas.
Michele Ceccarelli, Domenico Speranza, Domenico Grimaldi, Francesco Lamonaca
2010 — conf
Combining 2D and 3D Features to Classify Protein Mutants in HeLa Cells.
MCS
Carlo Sansone, Vincenzo Paduano, Michele Ceccarelli
2010 J jnl
Data Mining in Cancer Research [Application Notes].
IEEE Comput. Intell. Mag.
Paulo J. G. Lisboa, Alfredo Vellido, Roberto Tagliaferri, Francesco Napolitano, Michele Ceccarelli, José David Martín-Guerrero, Elia Biganzoli
2010 — conf
Labeling Negative Examples in Supervised Learning of New Gene Regulatory Connections.
CIBB
Luigi Cerulo, Vincenzo Paduano, Pietro Zoppoli, Michele Ceccarelli
2010 J jnl
Learning gene regulatory networks from only positive and unlabeled data.
BMC Bioinform.
Luigi Cerulo, Charles Elkan, Michele Ceccarelli
2010 J jnl
TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach.
BMC Bioinform.
Pietro Zoppoli, Sandro Morganella, Michele Ceccarelli
2010 — conf
Using multivariate time series and association rules to detect logical change coupling: An empirical study.
ICSM
Gerardo Canfora, Michele Ceccarelli, Luigi Cerulo, Massimiliano Di Penta
2010 J jnl
VEGA: variational segmentation for copy number detection.
Bioinform.
Sandro Morganella, Luigi Cerulo, Giuseppe Viglietto, Michele Ceccarelli
2009 C conf
A Guideline Engine For Knowledge Management in Clinical Decision Support Systems (CDSSs).
SEKE
Michele Ceccarelli, Alessandro De Stasio, Antonio Donatiello, Dante Vitale
2009 J jnl
A scale space approach for unsupervised feature selection in mass spectra classification for ovarian cancer detection.
BMC Bioinform.
Michele Ceccarelli, Antonio d'Acierno, Angelo M. Facchiano
2009 — conf
An Information Theoretic Approach to Reverse Engineering of Regulatory Gene Networks from Time-Course Data.
CIBB
Pietro Zoppoli, Sandro Morganella, Michele Ceccarelli
2009 J jnl
Concordance indices for comparing fuzzy, possibilistic, rough and grey partitions.
Int. J. Knowl. Eng. Soft Data Paradigms
Michele Ceccarelli, Antonio Maratea
2009 — conf
Exploiting scientific workflows for large-scale gene expression data analysis.
ISCIS
Alessandro De Stasio, Marcus Ertelt, Wolfgang Kemmner, Ulf Leser, Michele Ceccarelli
2009 J jnl
IRIS: a method for reverse engineering of regulatory relations in gene networks.
BMC Bioinform.
Sandro Morganella, Pietro Zoppoli, Michele Ceccarelli
2009 — conf
Reverse Engineering of Regulatory Relations in Gene Networks by a Probabilistic Approach.
WILF
Michele Ceccarelli, Sandro Morganella, Pietro Zoppoli
2009 J jnl
Virtual genetic coding and time series analysis for alternative splicing prediction in C. elegans.
Artif. Intell. Medicine
Michele Ceccarelli, Antonio Maratea
2008 — conf
A Fuzzy Extension of Some Classical Concordance Measures and an Efficient Algorithm for Their Computation.
KES (3)
Michele Ceccarelli, Antonio Maratea
2008 — conf
A Machine Learning Approach to Mass Spectra Classification with Unsupervised Feature Selection.
CIBB
Michele Ceccarelli, Antonio d'Acierno, Angelo M. Facchiano
2008 — conf
Image Registration using Non-Linear Diffusion.
IGARSS (5)
Michele Ceccarelli, Maurizio di Bisceglie, Carmela Galdi, Generoso Giangregorio, Silvia Liberata Ullo
2008 J jnl
Improving fuzzy clustering of biological data by metric learning with side information.
Int. J. Approx. Reason.
Michele Ceccarelli, Antonio Maratea
2008 — conf
KON^3: A Clinical Decision Support System, in Oncology Environment, Based on Knowledge Management.
ICTAI (2)
Michele Ceccarelli, Antonio Donatiello, Dante Vitale
2007 J jnl
A Finite Markov Random Field approach to fast edge-preserving image recovery.
Image Vis. Comput.
Michele Ceccarelli
2007 — conf
An Alternative Splicing Predictor in C.Elegans Based on Time Series Analysis.
WILF
Michele Ceccarelli, Antonio Maratea
2007 — conf
Assessing Clustering Reliability and Features Informativeness by Random Permutations.
KES (3)
Michele Ceccarelli, Antonio Maratea
2007 J jnl
Microarray image gridding with stochastic search based approaches.
Image Vis. Comput.
Giuliano Antoniol, Michele Ceccarelli
2006 J jnl
A Deformable Grid-Matching Approach for Microarray Images.
IEEE Trans. Image Process.
Michele Ceccarelli, Giuliano Antoniol
2006 — conf
An Active Contour Approach To Automatic Detection Of The Intima-Media Thickness.
ICASSP (2)
Michele Ceccarelli, Nicola De Luca, Sandro Morganella
2006 J jnl
Computational uncertainty analysis of groundwater recharge in catchment.
Ecol. Informatics
Nazzareno Diodato, Michele Ceccarelli
2006 J jnl
Content-based Image Retrieval by a Fuzzy Scale-space Approach.
Int. J. Pattern Recognit. Artif. Intell.
Michele Ceccarelli, Francesco Musacchia, Alfredo Petrosino
2005 — conf
A Fuzzy Scale-Space Approach to Feature-Based Image Representation and Retrieval.
BVAI
Michele Ceccarelli, Francesco Musacchia, Alfredo Petrosino
2005 Misc conf
Fast Edge Preserving Picture Recovery by Finite Markov Random Fields.
ICIAP
Michele Ceccarelli
2005 — conf
Microarray image addressing based on the Radon transform.
ICIP (1)
Giuliano Antoniol, Michele Ceccarelli, Alfredo Petrosino
2005 — conf
Semi-supervised
WILF
Michele Ceccarelli, Antonio Maratea
2004 — conf
A Markov Random Field Approach to Microarray Image Gridding.
ICPR (3)
Giuliano Antoniol, Michele Ceccarelli
2004 — conf
An ICA Approach to Unsupervised Change Detection in Multispectral Images.
WIRN
Giuliano Antoniol, Michele Ceccarelli, P. Petrillo, Alfredo Petrosino
2004 B conf
Blotch removal in degraded digital video using independent component analysis.
IJCNN
Michele Ceccarelli, Alfredo Petrosino
2003 — conf
Browsing Large Pedigrees to Study of the Isolated Populations in the "Parco Nazionale del Cilento e Vallo di Diano".
WIRN
Giuliano Antoniol, Michele Ceccarelli, Vincenzo Fabio Rollo, Wanda Longo, Teresa Nutile, Marina Ciullo, Enza Colonna, Antonietta Calabria, Maria Astore, Anna Lembo, Paola Toriello, M. Grazia Persico
2003 — conf
Classification of Digital Terrain Models Through Fuzzy Clustering: An Application.
WILF
Giuliano Antoniol, Michele Ceccarelli, Antonio Maratea, F. Russo
2003 A conf
High Performance Missing Data Detection and Interpolation for Video Compression and Restoration Applications.
IPDPS
Michele Ceccarelli, Giuliano Laccetti, Alfredo Petrosino
2002 J jnl
A parallel fuzzy scale-space approach to the unsupervised texture separation.
Pattern Recognit. Lett.
Michele Ceccarelli, Alfredo Petrosino
2002 — conf
High performance motion analysis for video restoration.
DSP
Michele Ceccarelli, Alfredo Petrosino
2001 Misc conf
Circle Detection Based on Orientation Matching.
ICIAP
Michele Ceccarelli, Alfredo Petrosino, Giuliano Laccetti
2001 — conf
The orientation matching approach to circular object detection.
ICIP (3)
Michele Ceccarelli, Alfredo Petrosino
2000 B conf
Unsupervised Texture Discrimination Based on Rough Fuzzy Sets and Parallel Hierarchical Clustering.
ICPR
Alfredo Petrosino, Michele Ceccarelli
1999 Misc conf
A Scale-Space Approach to Pre-Attentive Texture Discrimination.
ICIAP
Alfredo Petrosino, Michele Ceccarelli
1997 J jnl
Multi-feature adaptive classifiers for SAR image segmentation.
Neurocomputing
Michele Ceccarelli, Alfredo Petrosino
1996 J jnl
Sequence recognition with radial basis function networks: experiments with spoken digits.
Neurocomputing
Michele Ceccarelli, Joël T. Hounsou
1993 J jnl
Competitive neural networks on message-passing parallel computers.
Concurr. Pract. Exp.
Michele Ceccarelli, Alfredo Petrosino, Roberto Vaccaro
1992 J jnl
Can Spurious States Be Useful?
Complex Syst.
Eduardo R. Caianiello, Michele Ceccarelli, Maria Marinaro