Michela Taufer

234 papers A 34B 36C 16Misc 7Journal 78Unranked 59
YearRankTypeTitle / Venue / Authors
2026 J jnl
Editorial on future generation computer systems (FGCS) special collection on advances in quantum computing: methods, algorithms, and systems Vol II.
Future Gener. Comput. Syst.
Stefano Markidis, Lucio Grandinetti, Michela Taufer
2026 J jnl
Large Data Acquisition and Analytics at Synchrotron Radiation Facilities.
CoRR
Aashish Panta, Giorgio Scorzelli, Amy Ashurst Gooch, Werner Sun, Katherine S. Shanks, Suchismita Sarker, Devin Bougie, Keara Soloway, Rolf Verberg, Tracy Berman, Glenn Tarcea, John Allison, Michela Taufer, Valerio Pascucci
2026 J jnl
Lowering Barriers and Raising Engagement: Stewardship Lessons From Faculty at Primarily Undergraduate Institutions Using National Cyberinfrastructure.
Comput. Sci. Eng.
Michael Sutherlin, Christine R. Kirkpatrick, Valerio Pascucci, Michela Taufer
2026 J jnl
Recognition of best paper, outstanding editors, and reviewers for future generation computer systems in 2025.
Future Gener. Comput. Syst.
Michela Taufer
2026 J jnl
Strategic investments in data democratization for scientific innovation.
Int. J. High Perform. Comput. Appl.
Michela Taufer, Valerio Pascucci, Christine R. Kirkpatrick, Ian T. Foster
2025 — conf
A Grassroots Network and Community Roadmap for Interconnected Autonomous Science Laboratories for Accelerated Discovery.
ICPP Workshops
Rafael Ferreira da Silva, Milad Abolhasani, Dionysios A. Antonopoulos, Laura Biven, Ryan N. Coffee, Ian T. Foster, Leslie Hamilton, Shantenu Jha, Theresa Mayer, Benjamin Mintz, Robert G. Moore, Salahudin Nimer, Noah Paulson, Woong Shin, Frédéric Suter, Mitra Taheri, Michela Taufer, Newell R. Washburn
2025 J jnl
A Grassroots Network and Community Roadmap for Interconnected Autonomous Science Laboratories for Accelerated Discovery.
CoRR
Rafael Ferreira da Silva, Milad Abolhasani, Dionysios A. Antonopoulos, Laura Biven, Ryan N. Coffee, Ian T. Foster, Leslie Hamilton, Shantenu Jha, Theresa Mayer, Benjamin Mintz, Robert G. Moore, Salahudin Nimer, Noah Paulson, Woong Shin, Frédéric Suter, Mitra Taheri, Michela Taufer, Newell R. Washburn
2025 C conf
A2SD: Accelerating Scientific Innovation Through Autonomous Discovery Systems.
ISC
Michela Taufer, Rafael Ferreira da Silva, Benjamin Mintz, Milad Abolhasani, Rosa M. Badia, Ewa Deelman, Robert G. Moore, John Shalf
2025 A conf
Advancing the GEOtiled Framework Through Scalable Terrain Parameter Computation.
HPDC
Gabriel Laboy, Paula Olaya, Jack Marquez, Michael Sutherlin, Rodrigo Vargas, Michela Taufer
2025 — conf
Bridging Performance Portability and Scalability for Plasma Simulations on Heterogeneous Systems.
SC Workshops
Nigel Phillip Tan, Scott V. Luedtke, Michela Taufer, Brian J. Albright
2025 B conf
Cross-Architecture Performance Analysis Using the RAJA Performance Suite.
ICPP
Dewi Yokelson, Stephanie Brink, Jason Burmark, Michael McKinsey, Befikir Bogale, Ian Lumsden, Michela Taufer, Tom Scogland, Olga Pearce
2025 — conf
Energy-Efficient Neural Network Training for Scientific Datasets with Advanced Similarity Analytics and Orchestration.
ICCS (1)
Kin Wai Ng, Orcun Yildiz, Tom Peterka, Florence Tama, Osamu Miyashita, Catherine D. Schuman, Michela Taufer
2025 J jnl
Exascale Implicit Kinetic Plasma Simulations on El~Capitan for Solving the Micro-Macro Coupling in Magnetospheric Physics.
CoRR
Stefano Markidis, Andong Hu, Ivy Peng, Luca Pennati, Ian Lumsden, Dewi Yokelson, Stephanie Brink, Olga Pearce, Thomas R. W. Scogland, Bronis R. de Supinski, Gian Luca Delzanno, Michela Taufer
2025 A conf
Flux Emulator: First Insights into Optimizing Scheduling for Exascale HPC.
HPDC
W. Jay Ashworth, Ian Lumsden, Jim Garlick, Mark Grondona, Olga Pearce, Stephanie Brink, Dewi Yokelson, Daniel Milroy, Tapasya Patki, Thomas Scogland, Michela Taufer
2025 — conf
GEOtiled-SG: A Scalable Framework for High-Resolution Terrain Parameter Computation.
eScience
Gabriel Laboy, Ian Lumsden, Paula Olaya, Jack Marquez, Kin Wai Ng, Rodrigo Vargas, Michela Taufer
2025 B conf
Large Data Acquisition and Analytics at Synchrotron Radiation Facilities.
IEEE Big Data
Aashish Panta, Giorgio Scorzelli, Amy Ashurst Gooch, Werner Sun, Katherine S. Shanks, Suchismita Sarker, Devin Bougie, Keara Soloway, Rolf Verberg, Tracy Berman, Glenn Tarcea, John Allison, Michela Taufer, Valerio Pascucci
2025 — conf
Low Latency Recoding CORDIC Algorithm for FPGA Implementation.
ICCS (3)
Pawel Poczekajlo, Leonid V. Moroz, Ewa Deelman, Michela Taufer, Pawel Gepner, Jerzy Krawiec
2025 J jnl
Now More Than Ever, Foundational AI Research and Infrastructure Depends on the Federal Government.
CoRR
Michela Taufer, Rada Mihalcea, Matthew Turk, Daniel P. Lopresti, Adam Wierman, Kevin R. B. Butler, Sven Koenig, David Danks, William Gropp, Manish Parashar, Yolanda Gil, William C. Regli, Rajmohan Rajaraman, David Jensen, Nadya Bliss, Mary Lou Maher
2025 A conf
On Optimizing Checkpoint Restoration for HPC Applications: Leveraging Merkle Trees and Asynchronous I/O.
HPDC
Zackary Malkmus, Nigel Tan, Ian Lumsden, Kevin Assogba, M. Mustafa Rafique, Bogdan Nicolae, Michela Taufer
2025 — conf
Optimizing I/O for an Exascale Implicit Kinetic Plasma Simulation using the Rabbit Storage System.
CLUSTER Workshops
Ian Lumsden, Hariharan Devarajan, Izzet Yildirim, Stefano Markidis, Andong Hu, Ivy Peng, Luca Pennati, Dewi Yokelson, Stephanie Brink, Olga Pearce, Tom Scogland, Bronis R. de Supinski, Gian Luca Delzanno, Anthony Kougkas, Xian-He Sun, Michela Taufer
2025 — conf
Performance Optimization of an Exascale Implicit Kinetic Plasma Simulation on El Capitan.
eScience
Ian Lumsden, Stefano Markidis, Andong Hu, Ivy Peng, Luca Pennati, Dewi Yokelson, Stephanie Brink, Olga Pearce, Tom Scogland, Hariharan Devarajan, Bronis R. de Supinski, Gian Luca Delzanno, Michela Taufer
2025 J jnl
Recognition of Best Paper, Outstanding Editors, and Reviewers for Future Generation Computer Systems in 2024.
Future Gener. Comput. Syst.
Michela Taufer
2025 — conf
Reproducibility for HPC and Distributed Environments: Committees, Nondeterminism, Performance and Workflows.
ACM REP
Raül Sirvent, Rocío Carratalá-Sáez, Amal Gueroudji, Tanzima Z. Islam, Line Pouchard, Michela Taufer
2025 J jnl
Scalable Climate Data Analysis: Balancing Petascale Fidelity and Computational Cost.
CoRR
Aashish Panta, Amy Gooch, Giorgio Scorzelli, Michela Taufer, Valerio Pascucci
2025 J jnl
Special Collection on Advances in Quantum Computing: Methods, Algorithms, and Systems.
Future Gener. Comput. Syst.
Stefano Markidis, Michela Taufer, Lucio Grandinetti
2025 — conf
Surrogate Models for Analyzing Performance Behavior of HPC Applications Using the RAJA Performance Suite.
ICCS (4)
Befikir Bogale, Ian Lumsden, Dalal Sukkari, Dewi Yokelson, Stephanie Brink, Olga Pearce, Michela Taufer
2025 — conf
Visualizing Temperature Hotspots and Their Impact Using the NEX-GDDP-CMIP6 Dataset.
eScience
W. Jay Ashworth, Jack Marquez, Michela Taufer
2024 C conf
DYAD: Locality-aware Data Management for accelerating Deep Learning Training.
SBAC-PAD
Hariharan Devarajan, Ian Lumsden, Chen Wang, Konstantia Georgouli, Tom Scogland, Jae-Seung Yeom, Michela Taufer
2024 J jnl
Design Concerns for Integrated Scripting and Interactive Visualization in Notebook Environments.
IEEE Trans. Vis. Comput. Graph.
Connor Scully-Allison, Ian Lumsden, Katy Williams, Jesse Bartels, Michela Taufer, Stephanie Brink, Abhinav Bhatele, Olga Pearce, Katherine E. Isaacs
2024 — conf
Empirical Study of Molecular Dynamics Workflow Data Movement: DYAD vs. Traditional I/O Systems.
IPDPS (Workshops)
Ian Lumsden, Hariharan Devarajan, Jack Marquez, Stephanie Brink, David Böhme, Olga Pearce, Jae-Seung Yeom, Michela Taufer
2024 J jnl
HPC and Cloud Convergence Beyond Technical Boundaries: Strategies for Economic Sustainability, Standardization, and Data Accessibility.
Computer
Michela Taufer, Daniel Milroy, Todd Gamblin, Andrew Jones, Bill Magro, Heidi Poxon, Seetharami R. Seelam
2024 — conf
Leveraging National Science Data Fabric Services to Train Data Scientists.
SC Workshops
Michela Taufer, Heberth F. Martinez, Aashish Panta, Paula Olaya, Jack Marquez, Amy Gooch, Giorgio Scorzelli, Valerio Pascucci
2024 J jnl
Mirror, Mirror on the Wall, What is the Best Topology of Them All?
Commun. ACM
Michela Taufer
2024 B conf
PerSSD: Persistent, Shared, and Scalable Data with Node-Local Storage for Scientific Workflows in Cloud Infrastructure.
IEEE Big Data
Paula Olaya, Sophia Wen, Jay F. Lofstead, Michela Taufer
2024 — conf
RAJA Performance Suite: Performance Portability Analysis with Caliper and Thicket.
SC Workshops
Olga Pearce, Jason Burmark, Rich Hornung, Befikir Bogale, Ian Lumsden, Michael McKinsey, Dewi Yokelson, David Böhme, Stephanie Brink, Michela Taufer, Tom Scogland
2024 J jnl
Recognition of best paper, outstanding editors, and outstanding reviewers for Future Generation Computer Systems in 2023.
Future Gener. Comput. Syst.
Michela Taufer
2024 J jnl
Sustainable Data Democratization: A Multifaceted Investment for an Equitable Future.
CoRR
Michela Taufer, Valerio Pascucci, Christine R. Kirkpatrick, Ian T. Foster
2024 A conf
Towards Affordable Reproducibility Using Scalable Capture and Comparison of Intermediate Multi-Run Results.
Middleware
Nigel Tan, Kevin Assogba, Walter J. Ashworth, Befikir Bogale, Franck Cappello, M. Mustafa Rafique, Michela Taufer, Bogdan Nicolae
2023 J jnl
A Survey of Graph Comparison Methods with Applications to Nondeterminism in High-Performance Computing.
Int. J. High Perform. Comput. Appl.
Sanjukta Bhowmick, Patrick Bell, Michela Taufer
2023 J jnl
Building Trust in Earth Science Findings through Data Traceability and Results Explainability.
IEEE Trans. Parallel Distributed Syst.
Paula Olaya, Dominic Kennedy, Ricardo M. Llamas, Leobardo Valera, Rodrigo Vargas, Jay F. Lofstead, Michela Taufer
2023 B conf
Composable Workflow for Accelerating Neural Architecture Search Using In Situ Analytics for Protein Classification.
ICPP
Georgia Channing, Ria Patel, Paula Olaya, Ariel Keller Rorabaugh, Osamu Miyashita, Silvina Caíno-Lores, Catherine D. Schuman, Florence Tama, Michela Taufer
2023 — conf
Development of Large-Scale Scientific Cyberinfrastructure and the Growing Opportunity to Democratize Access to Platforms and Data.
HCI (26)
Jakob Lüttgau, Giorgio Scorzelli, Valerio Pascucci, Michela Taufer
2023 — conf
EduHPC Lightning Talk Summary.
SC Workshops
Michael Alexander, Sanjukta Bhowmick, Befikir Bogale, Gilberto Díaz, Anne C. Elster, Danielle A. Ellsworth, Carlos Jaime Barrios Hernández, Evan Jaffe, Jack Marquez, Alison Melton, Aashish Pandey, Suzanne Parete-Koon, Nigel Tan, Michela Taufer, Verónica G. Melesse Vergara, Lauren Whitnah, George K. Thiruvathukal
2023 — conf
Efficient Particle Tracing for Scalable Kinetic Plasma Simulation Analysis.
CLUSTER Workshops
Nigel Tan, Scott V. Luedtke, Michela Taufer, Brian J. Albright
2023 B conf
Enabling Scalability in the Cloud for Scientific Workflows: An Earth Science Use Case.
CLOUD
Paula Olaya, Jakob Lüttgau, Camila Roa, Ricardo M. Llamas, Rodrigo Vargas, Sophia Wen, I-Hsin Chung, Seetharami R. Seelam, Yoonho Park, Jay F. Lofstead, Michela Taufer
2023 Misc conf
End-to-end Integration of Scientific Workflows on Distributed Cyberinfrastructures: Challenges and Lessons Learned with an Earth Science Application.
UCC
Camila Roa, Mats Rynge, Paula Olaya, Karan Vahi, Todd Miller, James Griffioen, Shelley Knuth, John Goodhue, Dávid Hudák, Alana Romanella, Ricardo M. Llamas, Rodrigo Vargas, Miron Livny, Ewa Deelman, Michela Taufer
2023 J jnl
Enhancing Scientific Research with FAIR Digital Objects in the National Science Data Fabric.
Comput. Sci. Eng.
Michela Taufer, Heberth F. Martinez, Jakob Lüttgau, Lauren Whitnah, Giorgio Scorzelli, Pania Newell, Aashish Panta, Peer-Timo Bremer, Douglas Fils, Christine R. Kirkpatrick, Valerio Pascucci
2023 A conf
GEOtiled: A Scalable Workflow for Generating Large Datasets of High-Resolution Terrain Parameters.
HPDC
Camila Roa, Paula Olaya, Ricardo M. Llamas, Rodrigo Vargas, Michela Taufer
2023 Misc conf
NSDF-Services: Integrating Networking, Storage, and Computing Services into a Testbed for Democratization of Data Delivery.
UCC
Jakob Lüttgau, Heberth F. Martinez, Paula Olaya, Giorgio Scorzelli, Glenn Tarcea, Jay F. Lofstead, Christine R. Kirkpatrick, Valerio Pascucci, Michela Taufer
2023 B conf
Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations.
e-Science
Harshita Sahni, Hector Carrillo-Cabada, Ekaterina D. Kots, Silvina Caíno-Lores, Jack Marquez, Ewa Deelman, Michel A. Cuendet, Harel Weinstein, Michela Taufer, Trilce Estrada
2023 J jnl
Orchestration of materials science workflows for heterogeneous resources at large scale.
Int. J. High Perform. Comput. Appl.
Naweiluo Zhou, Giorgio Scorzelli, Jakob Lüttgau, Rahul R. Kancharla, Joshua J. Kane, Robert Wheeler, Brendan P. Croom, Pania Newell, Valerio Pascucci, Michela Taufer
2023 J jnl
Performance assessment of ensembles of in situ workflows under resource constraints.
Concurr. Comput. Pract. Exp.
Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman
2023 J jnl
Recognition of Outstanding Future Generation Computer Systems Reviewers for 2022.
Future Gener. Comput. Syst.
Michela Taufer
2023 J jnl
Reproducing the Results for Neutron Star Interior Composition Explorer Observation of PSR J0030 + 0451.
Comput. Sci. Eng.
Chaitanya Afle, Patrick R. Miles, Silvina Caíno-Lores, Collin D. Capano, Ingo Tews, Karan Vahi, Ewa Deelman, Michela Taufer, Duncan A. Brown
2023 J jnl
Reproducing the results for NICER observation of PSR J0030+0451.
CoRR
Chaitanya Afle, Patrick R. Miles, Silvina Caíno-Lores, Collin D. Capano, Ingo Tews, Karan Vahi, Ewa Deelman, Michela Taufer, Duncan A. Brown
2023 — conf
Runtime Steering of Molecular Dynamics Simulations Through In Situ Analysis and Annotation of Collective Variables.
PASC
Silvina Caíno-Lores, Michel A. Cuendet, Jack Marquez, Ekaterina D. Kots, Trilce Estrada, Ewa Deelman, Harel Weinstein, Michela Taufer
2023 B conf
Scalable Incremental Checkpointing using GPU-Accelerated De-Duplication.
ICPP
Nigel Tan, Jakob Lüttgau, Jack Marquez, Keita Teranishi, Nicolas M. Morales, Sanjukta Bhowmick, Franck Cappello, Michela Taufer, Bogdan Nicolae
2023 A conf
Studying Latency and Throughput Constraints for Geo-Distributed Data in the National Science Data Fabric.
HPDC
Jakob Lüttgau, Heberth F. Martinez, Glenn Tarcea, Giorgio Scorzelli, Valerio Pascucci, Michela Taufer
2023 A conf
Thicket: Seeing the Performance Experiment Forest for the Individual Run Trees.
HPDC
Stephanie Brink, Michael McKinsey, David Böhme, Connor Scully-Allison, Ian Lumsden, W. Daryl Hawkins, Treece Burgess, Vanessa Lama, Jakob Lüttgau, Katherine E. Isaacs, Michela Taufer, Olga Pearce
2023 — conf
VINARCH: A Visual Analytics Interactive Tool for Neural Network Archaeology.
CLUSTER Workshops
Seoyoung An, Georgia Channing, Catherine D. Schuman, Michela Taufer
2022 B conf
A Methodology to Generate Efficient Neural Networks for Classification of Scientific Datasets.
e-Science
Ria Patel, Ariel Keller Rorabaugh, Paula Olaya, Silvina Caíno-Lores, Georgia Channing, Catherine D. Schuman, Osamu Miyashita, Florence Tama, Michela Taufer
2022 — conf
A Research-Based Course Module to Study Non-determinism in High Performance Applications.
IPDPS Workshops
Patrick Bell, Kae Suarez, Barbara Fossum, Dylan Chapp, Sanjukta Bhowmick, Michela Taufer
2022 J jnl
AI4IO: A suite of AI-based tools for IO-aware scheduling.
Int. J. High Perform. Comput. Appl.
Michael R. Wyatt II, Stephen Herbein, Todd Gamblin, Michela Taufer
2022 J jnl
An analytical performance model of generalized hierarchical scheduling.
Int. J. High Perform. Comput. Appl.
Stephen Herbein, Tapasya Patki, Dong H. Ahn, Sebastian Mobo, Clark Hathaway, Silvina Caíno-Lores, James Corbett, David Domyancic, Thomas R. W. Scogland, Bronis R. de Supinski, Michela Taufer
2022 J jnl
Analysis of Vector Particle-In-Cell (VPIC) memory usage optimizations on cutting-edge computer architectures.
J. Comput. Sci.
Nigel Tan, Robert F. Bird, Guangye Chen, Scott V. Luedtke, Brian J. Albright, Michela Taufer
2022 B conf
Augmenting Singularity to Generate Fine-grained Workflows, Record Trails, and Data Provenance.
e-Science
Dominic Kennedy, Paula Olaya, Jay F. Lofstead, Rodrigo Vargas, Michela Taufer
2022 J jnl
Building High-Throughput Neural Architecture Search Workflows via a Decoupled Fitness Prediction Engine.
IEEE Trans. Parallel Distributed Syst.
Ariel Keller Rorabaugh, Silvina Caíno-Lores, Travis Johnston, Michela Taufer
2022 — conf
Co-scheduling Ensembles of In Situ Workflows.
WORKS@SC
Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Frédéric Suter, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman
2022 J jnl
Co-scheduling Ensembles of In Situ Workflows.
CoRR
Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Frédéric Suter, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman
2022 J jnl
Designing an Interactive, Notebook-Embedded, Tree Visualization to Support Exploratory Performance Analysis.
CoRR
Connor Scully-Allison, Ian Lumsden, Katy Williams, Jesse Bartels, Michela Taufer, Stephanie Brink, Abhinav Bhatele, Olga Pearce, Katherine E. Isaacs
2022 J jnl
Downscaling Satellite Soil Moisture Using a Modular Spatial Inference Framework.
Remote. Sens.
Ricardo M. Llamas, Leobardo Valera, Paula Olaya, Michela Taufer, Rodrigo Vargas
2022 B conf
Enabling Call Path Querying in Hatchet to Identify Performance Bottlenecks in Scientific Applications.
e-Science
Ian Lumsden, Jakob Lüttgau, Vanessa Lama, Connor Scully-Allison, Stephanie Brink, Katherine E. Isaacs, Olga Pearce, Michela Taufer
2022 B conf
Identifying Structural Properties of Proteins from X-ray Free Electron Laser Diffraction Patterns.
e-Science
Paula Olaya, Silvina Caíno-Lores, Vanessa Lama, Ria Patel, Ariel Keller Rorabaugh, Osamu Miyashita, Florence Tama, Michela Taufer
2022 Misc conf
NSDF-Catalog: Lightweight Indexing Service for Democratizing Data Delivery.
UCC
Jakob Lüttgau, Giorgio Scorzelli, Valerio Pascucci, Glenn Tarcea, Christine R. Kirkpatrick, Michela Taufer
2022 A conf
NSDF-Cloud: Enabling Ad-Hoc Compute Clusters Across Academic and Commercial Clouds.
HPDC
Jakob Lüttgau, Paula Olaya, Naweiluo Zhou, Giorgio Scorzelli, Valerio Pascucci, Michela Taufer
2022 A conf
NSDF-FUSE: A Testbed for Studying Object Storage via FUSE File Systems.
HPDC
Paula Olaya, Jakob Lüttgau, Naweiluo Zhou, Jay F. Lofstead, Giorgio Scorzelli, Valerio Pascucci, Michela Taufer
2022 J jnl
Reproducibility of the First Image of a Black Hole in the Galaxy M87 From the Event Horizon Telescope Collaboration.
Comput. Sci. Eng.
Ria Patel, Brandan Roachell, Silvina Caíno-Lores, Ross Ketron, Jacob Leonard, Nigel Tan, Karan Vahi, Duncan A. Brown, Ewa Deelman, Michela Taufer
2022 J jnl
Reproducibility of the First Image of a Black Hole in the Galaxy M87 from the Event Horizon Telescope (EHT) Collaboration.
CoRR
Ria Patel, Brandan Roachell, Silvina Caíno-Lores, Ross Ketron, Jacob Leonard, Nigel Tan, Duncan A. Brown, Ewa Deelman, Michela Taufer
2022 B conf
Reproducing and Extending Analytical Performance Models of Generalized Hierarchical Scheduling.
e-Science
Jakob Lüttgau, Silvina Caíno-Lores, Kae Suarez, Dong H. Ahn, Stephen Herbein, Michela Taufer
2022 B conf
The Materials Commons Data Repository.
e-Science
Glenn Tarcea, Brian Puchala, Tracy Berman, Giorgio Scorzelli, Valerio Pascucci, Michela Taufer, John Allison
2022 B conf
Ubique: A New Model for Untangling Inter-task Data Dependence in Complex HPC Workflows.
e-Science
Jae-Seung Yeom, Dong H. Ahn, Ian Lumsden, Jakob Lüttgau, Silvina Caíno-Lores, Michela Taufer
2022 J jnl
VPIC 2.0: Next Generation Particle-in-Cell Simulations.
IEEE Trans. Parallel Distributed Syst.
Robert F. Bird, Nigel Tan, Scott V. Luedtke, Stephen Lien Harrell, Michela Taufer, Brian J. Albright
2021 B conf
A Case Study in Scientific Reproducibility from the Event Horizon Telescope (EHT).
e-Science
Ross Ketron, Jacob Leonard, Brandan Roachell, Ria Patel, R. White, Silvina Caíno-Lores, Nigel Tan, Patrick R. Miles, Karan Vahi, Ewa Deelman, Duncan A. Brown, Michela Taufer
2021 J jnl
A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hector Carrillo-Cabada, Jeremy Benson, Asghar M. Razavi, Brianna Mulligan, Michel A. Cuendet, Harel Weinstein, Michela Taufer, Trilce Estrada
2021 C conf
A Roadmap to Robust Science for High-throughput Applications: The Developers' Perspective.
CLUSTER
Michela Taufer, Ewa Deelman, Rafael Ferreira da Silva, Trilce Estrada, Mary W. Hall, Miron Livny
2021 B conf
A Roadmap to Robust Science for High-throughput Applications: The Scientists' Perspective.
e-Science
Michela Taufer, Ewa Deelman, Rafael Ferreira da Silva, Trilce Estrada, Mary W. Hall
2021 J jnl
A lightweight method for evaluating
J. Comput. Sci.
Tu Mai Anh Do, Loïc Pottier, Silvina Caíno-Lores, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman
2021 Misc conf
AI4IO: A Suite of Ai-Based Tools for IO-Aware HPC Resource Management.
HiPC
Michela Taufer
2021 J jnl
ANACIN-X: A software framework for studying non-determinism in MPI applications.
Softw. Impacts
Patrick Bell, Kae Suarez, Dylan Chapp, Nigel Tan, Sanjukta Bhowmick, Michela Taufer
2021 — conf
Assessing Resource Provisioning and Allocation of Ensembles of In Situ Workflows.
ICPP Workshops
Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Silvina Caíno-Lores, Michela Taufer, Ewa Deelman
2021 J jnl
Cybercosm: New Foundations for a Converged Science Data Ecosystem.
CoRR
Mark Asch, François Bodin, Micah D. Beck, Terry Moore, Michela Taufer, Jean-Pierre Vilotte
2021 J jnl
Identifying Degree and Sources of Non-Determinism in MPI Applications Via Graph Kernels.
IEEE Trans. Parallel Distributed Syst.
Dylan Chapp, Nigel Tan, Sanjukta Bhowmick, Michela Taufer
2021 — conf
Optimize Memory Usage in Vector Particle-In-Cell (VPIC) to Break the 10 Trillion Particle Barrier in Plasma Simulations.
ICCS (2)
Nigel Tan, Robert F. Bird, Guangye Chen, Michela Taufer
2021 J jnl
PEng4NN: An Accurate Performance Estimation Engine for Efficient Automated Neural Network Architecture Search.
CoRR
Ariel Keller Rorabaugh, Silvina Caíno-Lores, Michael R. Wyatt II, Travis Johnston, Michela Taufer
2021 J jnl
Reproducing GW150914: The First Observation of Gravitational Waves From a Binary Black Hole Merger.
Comput. Sci. Eng.
Duncan A. Brown, Karan Vahi, Michela Taufer, Von Welch, Ewa Deelman, Lorena A. Barba, George K. Thiruvathukal
2021 J jnl
VPIC 2.0: Next Generation Particle-in-Cell Simulations.
CoRR
Robert F. Bird, Nigel Tan, Scott V. Luedtke, Stephen Lien Harrell, Michela Taufer, Brian J. Albright
2020 — conf
A Novel Metric to Evaluate In Situ Workflows.
ICCS (1)
Tu Mai Anh Do, Loïc Pottier, Stephen Thomas, Rafael Ferreira da Silva, Michel A. Cuendet, Harel Weinstein, Trilce Estrada, Michela Taufer, Ewa Deelman
2020 J jnl
Building Containerized Environments for Reproducibility and Traceability of Scientific Workflows.
CoRR
Paula Olaya, Jay F. Lofstead, Michela Taufer
2020 J jnl
Building a Vision for Reproducibility in the Cyberinfrastructure Ecosystem: Leveraging Community Efforts.
Supercomput. Front. Innov.
Dylan Chapp, Victoria Stodden, Michela Taufer
2020 A conf
CanarIO: Sounding the Alarm on IO-Related Performance Degradation.
IPDPS
Michael R. Wyatt II, Stephen Herbein, Kathleen Shoga, Todd Gamblin, Michela Taufer
2020 J jnl
Flux: Overcoming scheduling challenges for exascale workflows.
Future Gener. Comput. Syst.
Dong H. Ahn, Ned Bass, Albert Chu, Jim Garlick, Mark Grondona, Stephen Herbein, Helgi I. Ingólfsson, Joseph Koning, Tapasya Patki, Thomas R. W. Scogland, Becky Springmeyer, Michela Taufer
2020 J jnl
Memory-Efficient and Skew-Tolerant MapReduce Over MPI for Supercomputing Systems.
IEEE Trans. Parallel Distributed Syst.
Tao Gao, Yanfei Guo, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer
2020 J jnl
Reproducing GW150914: the first observation of gravitational waves from a binary black hole merger.
CoRR
Duncan A. Brown, Karan Vahi, Michela Taufer, Von Welch, Ewa Deelman
2020 J jnl
Spatial Gap-Filling of ESA CCI Satellite-Derived Soil Moisture Based on Geostatistical Techniques and Multiple Regression.
Remote. Sens.
Ricardo M. Llamas, Mario Guevara, Danny Rorabaugh, Michela Taufer, Rodrigo Vargas
2020 — conf
Usability and Performance Improvements in Hatchet.
HUST/ProTools@SC
Stephanie Brink, Ian Lumsden, Connor Scully-Allison, Katy Williams, Olga Pearce, Todd Gamblin, Michela Taufer, Katherine E. Isaacs, Abhinav Bhatele
2019 J jnl
A three-phase workflow for general and expressive representations of nondeterminism in HPC applications.
Int. J. High Perform. Comput. Appl.
Dylan Chapp, Danny Rorabaugh, Kento Sato, Dong H. Ahn, Michela Taufer
2019 — conf
Applicability Study of the PRIMAD Model to LIGO Gravitational Wave Search Workflows.
P-RECS@HPDC
Dylan Chapp, Danny Rorabaugh, Duncan A. Brown, Ewa Deelman, Karan Vahi, Von Welch, Michela Taufer
2019 J jnl
Applicability study of the PRIMAD model to LIGO gravitational wave search workflows.
CoRR
Dylan Chapp, Danny Rorabaugh, Duncan A. Brown, Ewa Deelman, Karan Vahi, Von Welch, Michela Taufer
2019 — conf
Characterization of Power Usage and Performance in Data-Intensive Applications Using MapReduce over MPI.
PARCO
Joshua Hoke Davis, Tao Gao, Sunita Chandrasekaran, Heike Jagode, Anthony Danalis, Jack J. Dongarra, Pavan Balaji, Michela Taufer
2019 — conf
Characterizing In Situ and In Transit Analytics of Molecular Dynamics Simulations for Next-Generation Supercomputers.
eScience
Michela Taufer, Ewa Deelman, Stephen Thomas, Michael R. Wyatt II, Tu Mai Anh Do, Loïc Pottier, Rafael Ferreira da Silva, Harel Weinstein, Michel A. Cuendet, Trilce Estrada
2019 J jnl
Creating a portable, high-level graph analytics paradigm for compute and data-intensive applications.
Int. J. High Perform. Comput. Netw.
Robert Searles, Stephen Herbein, Travis Johnston, Michela Taufer, Sunita Chandrasekaran
2019 — conf
Initial Thoughts on Cybersecurity And Reproducibility.
P-RECS@HPDC
Ewa Deelman, Victoria Stodden, Michela Taufer, Von Welch
2019 A ed.
Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2019, Denver, Colorado, USA, November 17-19, 2019.
SC
Michela Taufer, Pavan Balaji, Antonio J. Peña
2019 — conf
SOMOSPIE: A Modular SOil MOisture SPatial Inference Engine Based on Data-Driven Decisions.
eScience
Danny Rorabaugh, Mario Guevara, Ricardo M. Llamas, Joy Kitson, Rodrigo Vargas, Michela Taufer
2019 J jnl
SOMOSPIE: A modular SOil MOisture SPatial Inference Engine based on data driven decision.
CoRR
Danny Rorabaugh, Mario Guevara, Ricardo M. Llamas, Joy Kitson, Rodrigo Vargas, Michela Taufer
2019 A conf
Session details: Reliability and Variability.
HPDC
Michela Taufer
2019 J jnl
Studying the Impact of Power Capping on MapReduce-based, Data-intensive Mini-applications on Intel KNL and KNM Architectures.
CoRR
Joshua Hoke Davis, Tao Gao, Sunita Chandrasekaran, Michela Taufer
2018 — conf
Graphic Encoding of Macromolecules for Efficient High-Throughput Analysis.
BCB
Trilce Estrada, Jeremy Benson, Hector Carrillo-Cabada, Asghar M. Razavi, Michel A. Cuendet, Harel Weinstein, Ewa Deelman, Michela Taufer
2018 B conf
KeyBin2: Distributed Clustering for Scalable and In-Situ Analysis.
ICPP
Xinyu Chen, Jeremy Benson, Matt Peterson, Michela Taufer, Trilce Estrada
2018 — conf
Leveraging In Situ Data Analysis to Enable Computational Steering of Brain's Neocortex Simulations with GENESIS.
HPCC/SmartCity/DSS
Sean McDaniel-Gray, David L. Boothe, Alfred B. Yu, Dale R. Shires, Michela Taufer
2018 — conf
Modeling the Next-Generation High Performance Schedulers.
SIGSIM-PADS
Michela Taufer
2018 B conf
On the Power of Combiner Optimizations in MapReduce Over MPI Workflows.
ICPADS
Tao Gao, Yanfei Guo, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer
2018 B conf
PRIONN: Predicting Runtime and IO using Neural Networks.
ICPP
Michael R. Wyatt II, Stephen Herbein, Todd Gamblin, Adam Moody, Dong H. Ahn, Michela Taufer
2018 J jnl
Record-and-Replay Techniques for HPC Systems: A Survey.
Supercomput. Front. Innov.
Dylan Chapp, Kento Sato, Dong H. Ahn, Michela Taufer
2018 J jnl
The future of scientific workflows.
Int. J. High Perform. Comput. Appl.
Ewa Deelman, Tom Peterka, Ilkay Altintas, Christopher D. Carothers, Kerstin Kleese van Dam, Kenneth Moreland, Manish Parashar, Lavanya Ramakrishnan, Michela Taufer, Jeffrey S. Vetter
2017 B conf
Bloomfish: A Highly Scalable Distributed K-mer Counting Framework.
ICPADS
Tao Gao, Yanfei Guo, Yanjie Wei, Bingqiang Wang, Yutong Lu, Pietro Cicotti, Pavan Balaji, Michela Taufer
2017 — conf
Data analytics for modeling soil moisture patterns across united states ecoclimatic domains.
IEEE BigData
Thomas Kitson, Paula Olaya, Elizabeth Racca, Michael R. Wyatt II, Mario Guevara, Rodrigo Vargas, Michela Taufer
2017 J jnl
Enabling scalable and accurate clustering of distributed ligand geometries on supercomputers.
Parallel Comput.
Boyu Zhang, Trilce Estrada, Pietro Cicotti, Pavan Balaji, Michela Taufer
2017 — ed.
High Performance Computing - ISC High Performance 2017 International Workshops, DRBSD, ExaComm, HCPM, HPC-IODC, IWOPH, IXPUG, P^3MA, VHPC, Visualization at Scale, WOPSSS, Frankfurt, Germany, June 18-22, 2017, Revised Selected Papers
ISC Workshops
Julian M. Kunkel, Rio Yokota, Michela Taufer, John Shalf
2017 A conf
Mimir: Memory-Efficient and Scalable MapReduce for Large Supercomputing Systems.
IPDPS
Tao Gao, Yanfei Guo, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer
2017 J jnl
Scheduling DAG-based workflows on single cloud instances: High-performance and cost effectiveness with a static scheduler.
Int. J. High Perform. Comput. Appl.
Michela Taufer, Arnold L. Rosenberg
2016 — conf
Development of a Scalable Method for Creating Food Groups Using the NHANES Dataset and MapReduce.
BCB
Michael R. Wyatt II, Travis Johnston, Mia Papas, Michela Taufer
2016 C conf
HYPPO: A Hybrid, Piecewise Polynomial Modeling Technique for Non-Smooth Surfaces.
SBAC-PAD
Travis Johnston, Connor Zanin, Michela Taufer
2016 — ed.
High Performance Computing - ISC High Performance 2016 International Workshops, ExaComm, E-MuCoCoS, HPC-IODC, IXPUG, IWOPH, P^3MA, VHPC, WOPSSS, Frankfurt, Germany, June 19-23, 2016, Revised Selected Papers
ISC Workshops
Michela Taufer, Bernd Mohr, Julian M. Kunkel
2016 C conf
Machine Learning Predictions of Runtime and IO Traffic on High-End Clusters.
CLUSTER
Ryan McKenna, Stephen Herbein, Adam Moody, Todd Gamblin, Michela Taufer
2016 J jnl
Performance characterization of irregular I/O at the extreme scale.
Parallel Comput.
Stephen Herbein, Sean McDaniel, Norbert Podhorszki, Jeremy Logan, Scott Klasky, Michela Taufer
2016 C conf
Resource Management for Running HPC Applications in Container Clouds.
ISC
Stephen Herbein, Ayush Dusia, Aaron Myles Landwehr, Sean McDaniel, José Monsalve Diaz, Yang Yang, Seetharami R. Seelam, Michela Taufer
2016 A conf
Scalable I/O-Aware Job Scheduling for Burst Buffer Enabled HPC Clusters.
HPDC
Stephen Herbein, Dong H. Ahn, Don Lipari, Thomas R. W. Scogland, Marc Stearman, Mark Grondona, Jim Garlick, Becky Springmeyer, Michela Taufer
2016 C conf
Scheduling Matters: Area-Oriented Heuristic for Resource Management.
SBAC-PAD
Jeremy Benson, Trilce Estrada, Arnold L. Rosenberg, Michela Taufer
2016 J jnl
Special Issue on Cluster Computing.
Parallel Comput.
Michela Taufer, Pavan Balaji, Satoshi Matsuoka
2016 B conf
Study of Neocortex Simulations with GENESIS on High Performance Computing Resources.
ICPADS
Sean McDaniel, David L. Boothe, Joshua C. Crone, Song Jun Park, Dale R. Shires, Alfred B. Yu, Michela Taufer
2016 — conf
Who is Afraid of I/O?: Exploring I/O Challenges and Opportunities at the Exascale.
ScienceCloud@HPDC
Michela Taufer
2015 B conf
A Genetic Programming Approach to Design Resource Allocation Policies for Heterogeneous Workflows in the Cloud.
ICPADS
Trilce Estrada, Michael R. Wyatt II, Michela Taufer
2015 B conf
A Testing Engine for High-Performance and Cost-Effective Workflow Execution in the Cloud.
ICPP
Vivek K. Pallipuram, Trilce Estrada, Michela Taufer
2015 C conf
A Two-Tiered Approach to I/O Quality of Service in Docker Containers.
CLUSTER
Sean McDaniel, Stephen Herbein, Michela Taufer
2015 B conf
Accurate Scoring of Drug Conformations at the Extreme Scale.
CCGRID
Boyu Zhang, Trilce Estrada, Pietro Cicotti, Pavan Balaji, Michela Taufer
2015 — conf
AsHES Keynote.
IPDPS Workshops
Michela Taufer
2015 C conf
Dynamic CPU Resource Allocation in Containerized Cloud Environments.
CLUSTER
José Monsalve Diaz, Aaron Myles Landwehr, Michela Taufer
2015 J jnl
Free energetics of carbon nanotube association in aqueous inorganic NaI salt solutions: Temperature effects using all-atom molecular dynamics simulations.
J. Comput. Chem.
Shuching Ou, Di Cui, Matthew Wezowicz, Michela Taufer, Sandeep Patel
2015 B conf
From HPC Performance to Climate Modeling: Transforming Methods for HPC Predictions into Models of Extreme Climate Conditions.
e-Science
Ryan McKinney, Vivek K. Pallipuram, Rodrigo Vargas, Michela Taufer
2015 — conf
HiCOMB 2015 Keynote and Invited Talks.
IPDPS Workshops
Ramesh Hariharan, Ananth Kalyanaraman, Michela Taufer, Trilce Estrada, Pietro Cicotti, Pavan Balaji
2015 J jnl
It-Situ Data Analysis of Protein Folding Trajectories.
CoRR
Travis Johnston, Boyu Zhang, Adam Liwo, Silvia Crivelli, Michela Taufer
2015 C conf
Network Quality of Service in Docker Containers.
CLUSTER
Ayush Dusia, Yang Yang, Michela Taufer
2015 C conf
On the Need for Reproducible Numerical Accuracy through Intelligent Runtime Selection of Reduction Algorithms at the Extreme Scale.
CLUSTER
Dylan Chapp, Travis Johnston, Michela Taufer
2015 Misc conf
Performance Tuning of MapReduce Jobs Using Surrogate-based Modeling.
ICCS
Travis Johnston, Mohammad Alsulmi, Pietro Cicotti, Michela Taufer
2015 A ed.
Proceedings of the 24th International Symposium on High-Performance Parallel and Distributed Computing, HPDC 2015, Portland, OR, USA, June 15-19, 2015
HPDC
Thilo Kielmann, Dean Hildebrand, Michela Taufer
2014 C conf
Applying frequency analysis techniques to dag-based workflows to benchmark and predict resource behavior on non-dedicated clusters.
CLUSTER
Vivek K. Pallipuram, Jeffrey DiMarco, Michela Taufer
2014 C conf
Bandwidth Modeling in Large Distributed Systems for Big Data Applications.
PDCAT
Bahman Javadi, Boyu Zhang, Michela Taufer
2014 — conf
Benchmarking the Performance of Scientific Applications with Irregular I/O at the Extreme Scale.
ICPP Workshops
Stephen Herbein, Scott Klasky, Michela Taufer
2014 A conf
Enabling In-Situ Data Analysis for Large Protein-Folding Trajectory Datasets.
IPDPS
Boyu Zhang, Trilce Estrada, Pietro Cicotti, Michela Taufer
2014 C conf
Gender and volunteer computing: A survey study.
FIE
Feng Raoking, Joanne McGrath Cohoon, Kathryn Cooke, Michela Taufer, Trilce Estrada
2014 J jnl
Pursuing Coordinated Trajectory Progression and Efficient Resource Utilization of GPU-Enabled Molecular Dynamics Simulations.
IEEE Des. Test
Samuel Schlachter, Stephen Herbein, Shuching Ou, Jeremy S. Logan, Sandeep Patel, Michela Taufer
2014 Misc conf
Study of the Network Impact on Earthquake Early Warning in the Quake-catcher Network Project.
ICCS
Marcos Portnoi, Samuel Schlachter, Michela Taufer
2014 B conf
Using surrogate-based modeling to predict optimal I/O parameters of applications at the extreme scale.
ICPADS
Michael Matheny, Stephen Herbein, Norbert Podhorszki, Scott Klasky, Michela Taufer
2013 B conf
Benchmarking Gender Differences in Volunteer Computing Projects.
e-Science
Trilce Estrada, Kathleen L. Pusecker, Manuel R. Torres, Joanne McGrath Cohoon, Michela Taufer
2013 B conf
Efficient SDS Simulations on Multi-GPU Nodes of XSEDE High-End Clusters.
e-Science
Samuel Schlachter, Stephen Herbein, Michela Taufer, Shuching Ou, Sandeep Patel, Jeremy S. Logan
2013 J jnl
GPU-Enabled Macromolecular Simulation: Challenges and Opportunities.
Comput. Sci. Eng.
Michela Taufer, Narayan Ganesan, Sandeep Patel
2013 — conf
On Efficiently Capturing Scientific Properties in Distributed Big Data without Moving the Data: A Case Study in Distributed Structural Biology Using MapReduce.
CSE
Boyu Zhang, Trilce Estrada, Pietro Cicotti, Michela Taufer
2013 J jnl
On the powerful use of simulations in the Quake-Catcher Network to efficiently position low-cost earthquake sensors.
Future Gener. Comput. Syst.
Kyle E. Benson, Samuel Schlachter, Trilce Estrada, Michela Taufer, Jesse Lawrence, Elizabeth Cochran
2013 — conf
Performance Dissection of a Molecular Dynamics Code across CUDA and GPU Generations.
IPDPS Workshops
Matthew Wezowicz, Trilce Estrada, Sandeep Patel, Michela Taufer
2013 — conf
Performance Impact of I/O on QMCPack Simulations at the Petascale and Beyond.
CSE
Stephen Herbein, Michael Matheny, Matthew Wezowicz, Jaron T. Krogel, Jeremy Logan, J. Kim, Scott Klasky, Michela Taufer
2013 — conf
Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce.
IPDPS Workshops
Daniel T. Yehdego, Boyu Zhang, Vikram Kumar Reddy Kodimala, Kyle L. Johnson, Michela Taufer, Ming-Ying Leung
2012 — conf
A modularized MapReduce framework to support RNA secondary structure prediction and analysis workflows.
BIBM Workshops
Boyu Zhang, Daniel T. Yehdego, Kyle L. Johnson, Ming-Ying Leung, Michela Taufer
2012 J jnl
A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach.
Comput. Biol. Medicine
Trilce Estrada, Boyu Zhang, Pietro Cicotti, Roger S. Armen, Michela Taufer
2012 — conf
ExSciTecH: Expanding volunteer computing to Explore Science, Technology, and Health.
eScience
Michael Matheny, Samuel Schlachter, L. M. Crouse, E. T. Kimmel, Trilce Estrada, Marcel Schumann, Roger S. Armen, Gary M. Zoppetti, Michela Taufer
2012 J jnl
Hierarchical fractional-step approximations and parallel kinetic Monte Carlo algorithms.
J. Comput. Phys.
Giorgos Arampatzis, Markos A. Katsoulakis, Petr Plechác, Michela Taufer, Lifan Xu
2012 — conf
On the Cost of a General GPU Framework: The Strange Case of CUDA 4.0 vs. CUDA 5.0.
SC Companion
Matthew Wezowicz, Michela Taufer
2012 A conf
On the effectiveness of application-aware self-management for scientific discovery in volunteer computing systems.
SC
Trilce Estrada, Michela Taufer
2012 — conf
Reengineering High-throughput Molecular Datasets for Scalable Clustering Using MapReduce.
HPCC-ICESS
Trilce Estrada, Boyu Zhang, Michela Taufer, Pietro Cicotti, Roger S. Armen
2012 — conf
Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results.
BCB
Daniel T. Yehdego, Boyu Zhang, Michela Taufer, Vikram Kumar Reddy Kodimala, Rahulsimham Vegesna, Sameera Viswakula, Kyle L. Johnson, Ming-Ying Leung
2011 J jnl
Evaluation of Several Two-Step Scoring Functions Based on Linear Interaction Energy, Effective Ligand Size, and Empirical Pair Potentials for Prediction of Protein-Ligand Binding Geometry and Free Energy.
J. Chem. Inf. Model.
Obaidur Rahaman, Trilce Estrada, Douglas J. Doren, Michela Taufer, Charles L. Brooks III, Roger S. Armen
2011 — conf
FENZI: GPU-Enabled Molecular Dynamics Simulations of Large Membrane Regions Based on the CHARMM Force Field and PME.
IPDPS Workshops
Narayan Ganesan, Michela Taufer, Brad A. Bauer, Sandeep Patel
2011 J jnl
Molecular dynamics simulations of aqueous ions at the liquid-vapor interface accelerated using graphics processors.
J. Comput. Chem.
Brad A. Bauer, Joseph E. Davis, Michela Taufer, Sandeep Patel
2011 — conf
On the Powerful Use of Simulations in the Quake-Catcher Network to Efficiently Position Low-cost Earthquake Sensors.
eScience
Kyle E. Benson, Trilce Estrada, Michela Taufer, Jesse Lawrence, Elizabeth Cochran
2011 — conf
Poster: study of protein-ligand binding geometries using a scalable and accurate octree-based algorithm in mapReduce.
SC Companion
Trilce Estrada, Boyu Zhang, Pietro Cicotti, Roger S. Armen, Michela Taufer
2011 — ch.
Protein Docking.
Encyclopedia of Parallel Computing
Roger S. Armen, Eric R. May, Michela Taufer
2011 C conf
Providing Quality of Science in Volunteer Computing.
HPCC
Trilce Estrada, Michela Taufer
2011 — conf
Simulating Application Resilience at Exascale.
Euro-Par Workshops (2)
Rolf Riesen, Kurt B. Ferreira, Maria Ruiz Varela, Michela Taufer, Arun Rodrigues
2011 J jnl
Special issue of computer communications on information and future communication security.
Comput. Commun.
Jong Hyuk Park, Sheikh Iqbal Ahamed, Willy Susilo, Michela Taufer
2011 J jnl
Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs).
J. Comput. Chem.
Narayan Ganesan, Brad A. Bauer, Timothy R. Lucas, Sandeep Patel, Michela Taufer
2010 — conf
A Dynamic Programming Algorithm for Finding the Optimal Segmentation of an RNA Sequence in Secondary Structure Predictions.
BICoB
Abel Licon, Michela Taufer, Ming-Ying Leung, Kyle L. Johnson
2010 — conf
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism.
BCB
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhler, Michela Taufer
2010 — conf
Automatic selection of near-native protein-ligand conformations using a hierarchical clustering and volunteer computing.
BCB
Trilce Estrada, Roger S. Armen, Michela Taufer
2010 A conf
Improving numerical reproducibility and stability in large-scale numerical simulations on GPUs.
IPDPS
Michela Taufer, Omar Padron, Philip Saponaro, Sandeep Patel
2010 A conf
Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs.
IPDPS
Lifan Xu, Michela Taufer, Stuart Collins, Dionisios G. Vlachos
2009 — conf
Balancing Scientist Needs and Volunteer Preferences in Volunteer Computing Using Constraint Optimization.
ICCS (1)
James Atlas, Trilce Estrada, Keith Decker, Michela Taufer
2009 A conf
EmBOINC: An emulator for performance analysis of BOINC projects.
IPDPS
Trilce Estrada, Michela Taufer, Kevin Reed, David P. Anderson
2009 B conf
MNEMONIC: A Network Environment for Automatic Optimization and Tuning of Data Movement over Advanced Networks.
ICCCN
Patrick McClory, Ezra Kissel, D. Martin Swany, Michela Taufer
2009 B conf
Modeling Job Lifespan Delays in Volunteer Computing Projects.
CCGRID
Trilce Estrada, Michela Taufer, Kevin Reed
2009 J jnl
Performance Prediction and Analysis of BOINC Projects: An Empirical Study with EmBOINC.
J. Grid Comput.
Trilce Estrada, Michela Taufer, David P. Anderson
2009 J jnl
PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots.
Nucleic Acids Res.
Michela Taufer, Abel Licon, Roberto Araiza, David Mireles, F. H. D. van Batenburg, Alexander P. Gultyaev, Ming-Ying Leung
2009 — conf
Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors.
BICoB
Joseph E. Davis, Adnan Ozsoy, Sandeep Patel, Michela Taufer
2008 — conf
A distributed evolutionary method to design scheduling policies for volunteer computing.
Conf. Computing Frontiers
Trilce Estrada, Olac Fuentes, Michela Taufer
2008 J jnl
A distributed evolutionary method to design scheduling policies for volunteer computing.
SIGMETRICS Perform. Evaluation Rev.
Trilce Estrada, Olac Fuentes, Michela Taufer
2008 A conf
On the Effectiveness of Rebuilding RNA Secondary Structures from Sequence Chunks.
IPDPS
Michela Taufer, Thamar Solorio, Abel Licon, David Mireles, Ming-Ying Leung
2008 J jnl
RNAVLab: A virtual laboratory for studying RNA secondary structures based on grid computing technology.
Parallel Comput.
Michela Taufer, Ming-Ying Leung, Thamar Solorio, Abel Licon, David Mireles, Roberto Araiza, Kyle L. Johnson
2007 Misc conf
Evaluation of IEEE 754 floating-point arithmetic compliance across a wide range of heterogeneous computers.
Richard Tapia Celebration of Diversity in Computing Conference
Guillermo A. Lopez, Michela Taufer, Patricia J. Teller
2007 A conf
Moving Volunteer Computing towards Knowledge-Constructed, Dynamically-Adaptive Modeling and Scheduling.
IPDPS
Michela Taufer, Andre Kerstens, Trilce Estrada, David A. Flores, Richard Zamudio, Patricia J. Teller, Roger S. Armen, Charles L. Brooks III
2007 A conf
RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology.
IPDPS
Michela Taufer, Ming-Ying Leung, Kyle L. Johnson, Abel Licon
2007 B conf
SimBA: A Discrete Event Simulator for Performance Prediction of Volunteer Computing Projects.
PADS
Michela Taufer, Andre Kerstens, Trilce Estrada, David A. Flores, Patricia J. Teller
2007 A conf
Topaz: Extending Firefox to Accommodate the GridFTP Protocol.
IPDPS
Richard Zamudio, Daniel Catarino, Michela Taufer, Brent Stearn, Karan Bhatia
2006 A conf
A systematic multi-step methodology for performance analysis of communication traces of distributed applications based on hierarchical clustering.
IPDPS
Maria Gabriela Aguilera, Patricia J. Teller, Michela Taufer, Felix Wolf
2006 A conf
Poster reception - SimBA: a discrete event simulator for performance prediction of volunteer computing projects.
SC
David A. Flores, Trilce Estrada, Michela Taufer, Patricia J. Teller, Andre Kerstens
2006 J jnl
Predictor@Home: A "Protein Structure Prediction Supercomputer' Based on Global Computing.
IEEE Trans. Parallel Distributed Syst.
Michela Taufer, Chahm An, Andreas Kerstens, Charles L. Brooks III
2006 B conf
The Effectiveness of Threshold-Based Scheduling Policies in BOINC Projects.
e-Science
Trilce Estrada, David A. Flores, Michela Taufer, Patricia J. Teller, Andre Kerstens, David P. Anderson
2006 — conf
compPknots: A Framework for Parallel Prediction and Comparison of RNA Secondary Structures with Pseudoknots.
ISPA Workshops
Trilce Estrada, Abel Licon, Michela Taufer
2005 J jnl
DGMonitor: A Performance Monitoring Tool for Sandbox-Based Desktop Grid Platforms.
J. Supercomput.
Pietro Cicotti, Michela Taufer, Andrew A. Chien
2005 A conf
Homogeneous Redundancy: a Technique to Ensure Integrity of Molecular Simulation Results Using Public Computing.
IPDPS
Michela Taufer, David P. Anderson, Pietro Cicotti, Charles L. Brooks III
2005 B conf
Metrics for Effective Resource Management in Global Computing Environments.
e-Science
Michela Taufer, Patricia J. Teller, David P. Anderson, Charles L. Brooks III
2005 A conf
Predictor@Home: A "Protein Structure Prediction Supercomputer" Based on Public-Resource Computing.
IPDPS
Michela Taufer, Chahm An, Andreas Kerstens, Charles L. Brooks III
2005 J jnl
Study of a highly accurate and fast protein-ligand docking method based on molecular dynamics.
Concurr. Comput. Pract. Exp.
Michela Taufer, Michael F. Crowley, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III
2005 J jnl
The Computational Chemistry Prototyping Environment.
Proc. IEEE
Kim K. Baldridge, Jerry P. Greenberg, Wibke Sudholt, Stephen Mock, Ilkay Altintas, Céline Amoreira, Yohann Potier, Adam Birnbaum, Karan Bhatia, Michela Taufer
2004 A conf
Characterizing and Evaluating Desktop Grids: An Empirical Study.
IPDPS
Derrick Kondo, Michela Taufer, Charles L. Brooks III, Henri Casanova, Andrew A. Chien
2004 A conf
DGMonitor: A Performance Monitoring Tool for Sandbox-Based Desktop Grid Platforms.
IPDPS
Pietro Cicotti, Michela Taufer, Andrew A. Chien
2004 A conf
Study of a Highly Accurate and Fast Protein-Ligand Docking Algorithm Based on Molecular Dynamics.
IPDPS
Michela Taufer, Michael F. Crowley, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III
2003 C conf
A Performance Monitor Based on Virtual Global Time for Clusters of PCs.
CLUSTER
Michela Taufer, Thomas Stricker
2003 B conf
Combining Task- and Data Parallelism to Speed up Protein Folding on a Desktop Grid Platform.
CCGRID
Bennet Uk, Michela Taufer, Thomas Stricker, Giovanni Settanni, Andrea Cavalli, Amedeo Caflisch
2003 A conf
Implementation and Characterization of Protein Folding on a Desktop Computational Grid - Is CHARMM a Suitable Candidate for the United Devices MetaProcessor?
IPDPS
Bennet Uk, Michela Taufer, Thomas Stricker, Giovanni Settanni, Andrea Cavalli
2002 — —
Inverting middleware: performance analysis of layered application codes in high performance distributed computing.
Michela Taufer
2002 B conf
On the Migration of the Scientific Code Dyana from SMPs to Clusters of PCs and on to the Grid.
CCGRID
Michela Taufer, Thomas Stricker, Gerard Roos, Peter Güntert
2002 A conf
Performance Characterization of a Molecular Dynamics Code on PC Clusters: Is There Any Easy Parallelism in CHARMM?.
IPDPS
Michela Taufer, Egon Perathoner, Andrea Cavalli, Amedeo Caflisch, Thomas Stricker
2002 B conf
Scalability and resource usage of an OLAP benchmark on clusters of PCs.
SPAA
Michela Taufer, Thomas Stricker, Roger Weber
1998 A conf
Accurate Performance Evaluation, Modelling and Prediction of a Message Passing Simulation Code based on Middleware.
SC
Michela Taufer, Thomas Stricker
1996 — conf
Molecular Dynamics Simulations on Cray Clusters using the SCIDDLE-PVM environment.
PVM
Peter Arbenz, Martin Billeter, Peter Güntert, Peter Luginbühl, Michela Taufer, Urs von Matt