Michel Dumontier

259 papers A* 1A 1B 9C 3Misc 4Journal 152Unranked 76

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment. BMC Medical Informatics Decis. Mak. Komal Gilani, Wei Wei, Christof Peters, Marlo Verket, Hans-Peter Brunner-La Rocca, Enrico Nicolis, Martina Colombo, Katharina Marx-Schütt, Visara Urovi, Michel Dumontier
2026	J	`jnl`	CompDiff: Hierarchical Compositional Diffusion for Fair and Zero-Shot Intersectional Medical Image Generation. CoRR Mahmoud K. Ibrahim, Bart Elen, Chang Sun, Gökhan Ertaylan, Michel Dumontier
2026	J	`jnl`	Rule-augmented constraint learning for semantic error detection in MIMIC-III knowledge graph. Int. J. Medical Informatics Özge Noben, Ömer Durukan Kiliç, Tjitze Rienstra, Michel Dumontier, Remzi Celebi
2025	J	`jnl`	Adapting Lightweight Vision Language Models for Radiological Visual Question Answering. CoRR Aditya Shourya, Michel Dumontier, Chang Sun
2025	J	`jnl`	AudSemThinker: Enhancing Audio-Language Models through Reasoning over Semantics of Sound. CoRR Gijs Wijngaard, Elia Formisano, Michele Esposito, Michel Dumontier
2025	J	`jnl`	Audio-Language Datasets of Scenes and Events: A Survey. IEEE Access Gijs Wijngaard, Elia Formisano, Michele Esposito, Michel Dumontier
2025	J	`jnl`	AudioToolAgent: An Agentic Framework for Audio-Language Models. CoRR Gijs Wijngaard, Elia Formisano, Michel Dumontier
2025	J	`jnl`	CDE-Mapper: Using Retrieval-Augmented Language Models for Linking Clinical Data Elements to Controlled Vocabularies. CoRR Komal Gilani, Marlo Verket, Christof Peters, Michel Dumontier, Hans-Peter Brunner-La Rocca, Visara Urovi
2025	J	`jnl`	CDE-Mapper: Using retrieval-augmented language models for linking clinical data elements to controlled vocabularies. Comput. Biol. Medicine Komal Gilani, Marlo Verket, Christof Peters, Michel Dumontier, Hans-Peter Brunner-La Rocca, Visara Urovi
2025	J	`jnl`	Data-Balanced Curriculum Learning for Audio Question Answering. CoRR Gijs Wijngaard, Elia Formisano, Michele Esposito, Michel Dumontier
2025	J	`jnl`	Enabling Granular Subgroup Level Model Evaluations by Generating Synthetic Medical Time Series. CoRR Mahmoud K. Ibrahim, Bart Elen, Chang Sun, Gökhan Ertaylan, Michel Dumontier
2025	J	`jnl`	Generating unseen diseases patient data using ontology enhanced generative adversarial networks. npj Digit. Medicine Chang Sun, Michel Dumontier
2025	J	`jnl`	Generative AI for synthetic data across multiple medical modalities: A systematic review of recent developments and challenges. Comput. Biol. Medicine Mahmoud K. Ibrahim, Yasmina Al Khalil, Sina Amirrajab, Chang Sun, Marcel Breeuwer, Josien P. W. Pluim, Bart Elen, Gökhan Ertaylan, Michel Dumontier
2025	J	`jnl`	Privacy preservation in blockchain-based healthcare data sharing: A systematic review. Peer Peer Netw. Appl. Kun Li, Ankur Lohachab, Michel Dumontier, Visara Urovi
2025	—	`ed.`	Proceedings of the 8th Workshop on Semantic Web solutions for large-scale biomedical data analytics co-located with The ESWC 2025: Extended Semantic Web Conference (ESWC 2025), Portorož, Slovenia, June 1, 2025. SeWeBMeDa@ESWC Rita Torres de Sousa, Michel Dumontier, Dietrich Rebholz-Schuhmann, Ali Hasnain
2025	—	`conf`	SULO - a simplified upper-level ontology. JOWO Michel Dumontier, Remzi Çelebi, Komal Gilani, Isabelle de Zegher, Katerina Serafimova, Catalina Martínez-Costa, Stefan Schulz
2025	J	`jnl`	Semantic Web and Creative AI - A Technical Report from ISWS 2023. CoRR Raia Abu Ahmad, Reham Alharbi, Roberto Barile, Martin Böckling, Francisco Bolanos, Sara Bonfitto, Oleksandra Bruns, Irene Celino, Yashrajsinh Chudasama, Martin Critelli, Claudia d'Amato, Giada D'Ippolito, Ioannis Dasoulas, Stefano De Giorgis, Vincenzo De Leo, Chiara Di Bonaventura, Marco Di Panfilo, Daniil Dobriy, John Domingue, Xuemin Duan, Michel Dumontier, Sefika Efeoglu, Ruben Eschauzier, Ginwa Fakih, Nicolas Ferranti, Arianna Graciotti, Philipp Hanisch, George Hannah, Golsa Heidari, Aidan Hogan, Hassan Hussein, Alexane Jouglar, Jan-Christoph Kalo, Manoé Kieffer, Antonis Klironomos, Inês Koch, Weronika Lajewska, Nicolas Lazzari, Mikael Lindekrans, Anna Sofia Lippolis, Majlinda Llugiqi, Eleonora Mancini, Eleonora Marzi, Laura Menotti, Daniela F. Milon-Flores, Soulakshmee D. Nagowah, Kerstin Neubert, Emetis Niazmand, Ebrahim Norouzi, Beatriz Olarte Martinez, Anouk Michelle Oudshoorn, Andrea Poltronieri, Valentina Presutti, Disha Purohit, Ensiyeh Raoufi, Célian Ringwald, Johanna Rockstroh, Sebastian Rudolph, Harald Sack, Zafar Saeed, Mohammad Javad Saeedizade, Aya Sahbi, Cristian Santini, Aleksandra Simic, Dennis Sommer, Rita T. Sousa, Mary Ann Tan, Vidyashree Tarikere, Tabea Tietz, Liam Tirpitz, Arnaldo Tomasino, Frank van Harmelen, Joao Vissoci, Caitlin Woods, Bohui Zhang, Xinyue Zhang, Heng Zheng
2025	—	`conf`	Toward a Unified Framework for Realizable Entities: Dispositions, Plans, and Beyond. JOWO Stefan Schulz, Michel Dumontier, Remzi Çelebi, Katerina Serafimova, Catalina Martínez-Costa
2025	—	`conf`	Towards biomedical neurosymbolic AI: From semantic knowledge infrastructure to explainable predictions. EGC Michel Dumontier
2025	—	`conf`	Using Clinical Guidelines, Domain Ontology, and LLMs for Personalized Leukemia Treatment Recommendations. SeWeBMeDA@ESWC Xingru Xu, Michel Dumontier, Chang Sun
2024	J	`jnl`	ACES: Evaluating Automated Audio Captioning Models on the Semantics of Sounds. CoRR Gijs Wijngaard, Elia Formisano, Bruno L. Giordano, Michel Dumontier
2024	—	`conf`	Analyzing SPARQL query logs: A study on schema coverage and query content. SWAT4HCLS Maryam Mohammadi, Michel Dumontier
2024	J	`jnl`	Audio-Language Datasets of Scenes and Events: A Survey. CoRR Gijs Wijngaard, Elia Formisano, Michele Esposito, Michel Dumontier
2024	—	`conf`	Construction of a knowledge graph for food health claims. SWAT4HCLS Remzi Celebi, Ilse van Lier, Alie de Boer, Michel Dumontier
2024	J	`jnl`	CrowdED 1.0: Statistical Guideline for Designing Optimal Crowdsourcing Experiments. Hum. Comput. Amrapali Zaveri, Pedro V. Hernandez Serrano, Michel Dumontier
2024	J	`jnl`	Editorial of the special issue on semantic technologies for data and algorithmic governance. Semantic Web Sabrina Kirrane, Oshani Seneviratne, Michel Dumontier
2024	—	`conf`	Explaining Graph Neural Network predictions for drug repurposing. SWAT4HCLS Julie Loesch, Yang Yang, Pelinsu Ekmekci, Michel Dumontier, Remzi Celebi
2024	—	`conf`	Exploring the role of generative AI in constructing knowledge graphs for drug indications with medical context. SWAT4HCLS Reham Alharbi, Umair Ahmed, Daniil Dobriy, Weronika Lajewska, Laura Menotti, Mohammad Javad Saeedizade, Michel Dumontier
2024	J	`jnl`	Generative AI for Synthetic Data Across Multiple Medical Modalities: A Systematic Review of Recent Developments and Challenges. CoRR Mahmoud K. Ibrahim, Yasmina Al Khalil, Sina Amirrajab, Chang Sun, Marcel Breeuwer, Josien P. W. Pluim, Bart Elen, Gökhan Ertaylan, Michel Dumontier
2024	J	`jnl`	Improving rule mining via embedding-based link prediction. CoRR N'Dah Jean Kouagou, Arif Yilmaz, Michel Dumontier, Axel-Cyrille Ngonga Ngomo
2024	J	`jnl`	LSQ 2.0: A linked dataset of SPARQL query logs. Semantic Web Claus Stadler, Muhammad Saleem, Qaiser Mehmood, Carlos Buil-Aranda, Michel Dumontier, Aidan Hogan, Axel-Cyrille Ngonga Ngomo
2024	—	`ed.`	Proceedings of the 7th Workshop on Semantic Web solutions for large-scale biomedical data analytics co-located with The ESWC 2024: Extended Semantic Web Conference (ESWC 2024), Hersonissos, Greece, May 26, 2024. SeWeBMeDa@ESWC Ali Hasnain, Alba Catalina Morales Tirado, Michel Dumontier, Dietrich Rebholz-Schuhmann
2024	—	`conf`	Towards Biomedical Neurosymbolic AI: From Knowledge Infrastructure to Explainable Predictions. SeWeBMeDA@ESWC Michel Dumontier
2023	—	`conf`	ACES: Evaluating Automated Audio Captioning Models on the Semantics of Sounds. EUSIPCO Gijs Wijngaard, Elia Formisano, Bruno L. Giordano, Michel Dumontier
2023	—	`conf`	Analyze Decentralized Personal Health Data Using Solid, Digital Consent, and Federated Learning. SWAT4HCLS Chang Sun, Johan van Soest, Michel Dumontier
2023	—	`conf`	Enhanced GAT: Expanding Receptive Field with Meta Path-Guided RDF Rules for Two-Hop Connectivity. QALD/SemREC@ISWC Julie Loesch, Michel Dumontier, Remzi Celebi
2023	J	`jnl`	Evidence From Data Science on the Relationship Between Individual Beliefs/Behaviors Survey During COVID-19 Pandemic and Risk Preference. Adv. Artif. Intell. Mach. Learn. Onaopepo Adekunle, Arno Riedl, Michel Dumontier
2023	J	`jnl`	FAIR Begins at home: Implementing FAIR via the Community Data Driven Insights. CoRR Carlos Utrilla Guerrero, Maria Vivas Romero, Marc Dolman, Michel Dumontier
2023	—	`conf`	Generating Knowledge Graph Based Explanations for Drug Repurposing Predictions. SWAT4HCLS Elif Ozkan, Remzi Celebi, Arif Yilmaz, Vincent Emonet, Michel Dumontier
2023	J	`jnl`	Generating synthetic personal health data using conditional generative adversarial networks combining with differential privacy. J. Biomed. Informatics Chang Sun, Johan van Soest, Michel Dumontier
2023	B	`conf`	Graph-based Categorical Embedding. ESANN Weiwei Wang, Stefano Bromuri, Michel Dumontier
2023	J	`jnl`	Models towards Risk Behavior Prediction and Analysis: A Netherlands Case study. CoRR Onaopepo Adekunle, Arno Riedl, Michel Dumontier
2023	—	`conf`	On the Combination of Event Calculus and Empirical Semantic Drifts. ESWC Workshops Franz Krause, Xi Yan, Baptiste Darnala, Michel Dumontier
2023	—	`ed.`	Proceedings of the 5th Workshop on Semantic Web solutions for large-scale biomedical data analytics co-located with the Extended Semantic Web Conference (ESWC 2022), Hersonissos, Greece, May 29, 2022. SeWeBMeDa@ESWC Ali Hasnain, Tracy Robson, Michel Dumontier
2023	—	`ed.`	Proceedings of the 6th Workshop on Semantic Web Solutions for Large-Scale Biomedical Data Analytics co-located with ESWC 2023, Hersonissos, Greece, May 29, 2023. SeWeBMeDa@ESWC Ali Hasnain, Tracy Robson, Michel Dumontier, Alba Catalina Morales Tirado, Dietrich Rebholz-Schuhmann
2023	Misc	`conf`	Semantically-Informed Deep Neural Networks For Sound Recognition. ICASSP Michele Esposito, Giancarlo Valente, Yenisel Plasencia Calaña, Michel Dumontier, Bruno L. Giordano, Elia Formisano
2023	J	`jnl`	TAPS Responsibility Matrix: A tool for responsible data science by design. CoRR Visara Urovi, Remzi Celebi, Chang Sun, Linda Rieswijk, Michael Erard, Arif Yilmaz, Kody Moodley, Parveen Kumar, Michel Dumontier
2023	J	`jnl`	ciTIzen-centric DAta pLatform (TIDAL): Sharing distributed personal data in a privacy-preserving manner for health research. Semantic Web Chang Sun, Marc Gallofré Ocaña, Johan van Soest, Michel Dumontier
2022	—	`conf`	A Comprehensive Comparison of Automated FAIRness Evaluation Tools. SWAT4HCLS Chang Sun, Vincent Emonet, Michel Dumontier
2022	J	`jnl`	A formalization of one of the main claims of "The FAIR Guiding Principles for scientific data management and stewardship" by Wilkinson et al. 20161. Data Sci. Michel Dumontier
2022	—	`conf`	Automated Identification of Food Substitutions Using Knowledge Graph Embeddings. SWAT4HCLS Julie Loesch, Louis Meeckers, Ilse van Lier, Alie de Boer, Michel Dumontier, Remzi Celebi
2022	J	`jnl`	BioSimulators: a central registry of simulation engines and services for recommending specific tools. CoRR Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
2022	J	`jnl`	BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Res. Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
2022	J	`jnl`	Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science. CoRR Deepak R. Unni, Sierra A. T. Moxon, Michael Bada, Matthew H. Brush, Richard M. Bruskiewich, Paul A. Clemons, Vlado Dancík, Michel Dumontier, Karamarie Fecho, Gustavo Glusman, Jennifer J. Hadlock, Nomi L. Harris, Arpita Joshi, Tim E. Putman, Guangrong Qin, Stephen A. Ramsey, Kent A. Shefchek, Harold Solbrig, Karthik Soman, Anne E. Thessen, Melissa A. Haendel, Chris Bizon, Christopher J. Mungall
2022	J	`jnl`	Improving Correlation Capture in Generating Imbalanced Data using Differentially Private Conditional GANs. CoRR Chang Sun, Johan van Soest, Michel Dumontier
2022	J	`jnl`	LUCE: A Blockchain-based data sharing platform for monitoring data license accountability and compliance. CoRR Visara Urovi, Vikas Jaiman, Arno Angerer, Michel Dumontier
2022	—	`conf`	Nanotate: Semantically Annotating Experimental Protocols with Nanopublications. SWAT4HCLS Olga L. Giraldo, Miguel Ruano, Robin A. Richardson, Remzi Celebi, Michel Dumontier, Tobias Kuhn
2022	B	`conf`	Semantic Correlation Graph Embedding. FUZZ-IEEE Weiwei Wang, Yuchen Han, Stefano Bromuri, Michel Dumontier
2022	J	`jnl`	Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. J. Biomed. Semant. Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, Michel Dumontier, César Henrique Bernabé, Annika Jacobsen, Clémence M. A. Le Cornec, Mario Prieto Godoy, Núria Queralt-Rosinach, Leo J. Schultze Kool, Morris A. Swertz, Philip van Damme, K. Joeri van der Velde, Nawel Lalout, Shuxin Zhang, Marco Roos
2022	J	`jnl`	Studying the association of diabetes and healthcare cost on distributed data from the Maastricht Study and Statistics Netherlands using a privacy-preserving federated learning infrastructure. J. Biomed. Informatics Chang Sun, Johan van Soest, Annemarie Koster, Simone J. P. M. Eussen, Miranda T. Schram, Coen D. A. Stehouwer, Pieter C. Dagnelie, Michel Dumontier
2021	J	`jnl`	A systematic review on privacy-preserving distributed data mining. Data Sci. Chang Sun, Lianne Ippel, Andre Dekker, Michel Dumontier, Johan van Soest
2021	J	`jnl`	Experience: Automated Prediction of Experimental Metadata from Scientific Publications. ACM J. Data Inf. Qual. Stuti Nayak, Amrapali Zaveri, Pedro Hernandez Serrano, Michel Dumontier
2021	J	`jnl`	InContext: curation of medical context for drug indications. J. Biomed. Semant. Kody Moodley, Linda Rieswijk, Tudor I. Oprea, Michel Dumontier
2021	J	`jnl`	Knowledge Graph Completeness: A Systematic Literature Review. IEEE Access Subhi Issa, Onaopepo Adekunle, Fayçal Hamdi, Samira Si-Said Cherfi, Michel Dumontier, Amrapali Zaveri
2021	J	`jnl`	Privacy preserving distributed learning classifiers - Sequential learning with small sets of data. Comput. Biol. Medicine Fadila Zerka, Visara Urovi, Fabio Bottari, Ralph T. H. Leijenaar, Sean Walsh, Hanif Gabrani-Juma, Martin Gueuning, Akshayaa Vaidyanathan, Wim Vos, Mariaelena Occhipinti, Henry C. Woodruff, Michel Dumontier, Philippe Lambin
2021	J	`jnl`	Relation extraction from DailyMed structured product labels by optimally combining crowd, experts and machines. J. Biomed. Informatics Krist Shingjergji, Remzi Celebi, Jan C. Scholtes, Michel Dumontier
2021	—	`conf`	Reuse of Design Pattern Measurements for Health Data. JOWO Núria Queralt-Rosinach, Mark D. Wilkinson, Rajaram Kaliyaperumal, César Henrique Bernabé, Qinqin Long, Michel Dumontier, Paul N. Schofield, Marco Roos
2021	J	`jnl`	SIENA: Semi-automatic semantic enhancement of datasets using concept recognition. J. Biomed. Semant. Andreea Grigoriu, Amrapali Zaveri, Gerhard Weiss, Michel Dumontier
2021	J	`jnl`	Semantic micro-contributions with decentralized nanopublication services. PeerJ Comput. Sci. Tobias Kuhn, Ruben Taelman, Vincent Emonet, Haris Antonatos, Stian Soiland-Reyes, Michel Dumontier
2021	B	`conf`	User-friendly Composition of FAIR Workflows in a Notebook Environment. K-CAP Robin A. Richardson, Remzi Celebi, Sven van der Burg, Djura Smits, Lars Ridder, Michel Dumontier, Tobias Kuhn
2021	J	`jnl`	User-friendly Composition of FAIR Workflows in a Notebook Environment. CoRR Robin A. Richardson, Remzi Celebi, Sven van der Burg, Djura Smits, Lars Ridder, Michel Dumontier, Tobias Kuhn
2020	A	`conf`	Accelerating Discovery Science with an Internet of FAIR Data and Services. CIKM Michel Dumontier
2020	J	`jnl`	BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
2020	J	`jnl`	Blockchain for Privacy Preserving and Trustworthy Distributed Machine Learning in Multicentric Medical Imaging (C-DistriM). IEEE Access Fadila Zerka, Visara Urovi, Akshayaa Vaidyanathan, Samir Barakat, Ralph T. H. Leijenaar, Sean Walsh, Hanif Gabrani-Juma, Benjamin Miraglio, Henry C. Woodruff, Michel Dumontier, Philippe Lambin
2020	J	`jnl`	Considerations for the Conduction and Interpretation of FAIRness Evaluations. Data Intell. Ricardo de Miranda Azevedo, Michel Dumontier
2020	J	`jnl`	Distributed Analytics on Sensitive Medical Data: The Personal Health Train. Data Intell. Oya Beyan, Ananya Choudhury, Johan van Soest, Oliver Kohlbacher, Lukas Zimmermann, Holger Stenzhorn, Md. Rezaul Karim, Michel Dumontier, Stefan Decker, Luiz Olavo Bonino da Silva Santos, Andre Dekker
2020	J	`jnl`	FAIR Principles: Interpretations and Implementation Considerations. Data Intell. Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes
2020	J	`jnl`	Introduction - FAIR data, systems and analysis. Data Sci. Paul Groth, Michel Dumontier
2020	B	`ed.`	Knowledge Engineering and Knowledge Management - 22nd International Conference, EKAW 2020, Bolzano, Italy, September 16-20, 2020, Proceedings EKAW C. Maria Keet, Michel Dumontier
2020	J	`jnl`	Knowledge Graphs Evolution and Preservation - A Technical Report from ISWS 2019. CoRR Nacira Abbas, Kholoud Alghamdi, Mortaza Alinam, Francesca Alloatti, Glenda C. M. Amaral, Claudia d'Amato, Luigi Asprino, Martin Beno, Felix Bensmann, Russa Biswas, Ling Cai, Riley Capshaw, Valentina Anita Carriero, Irene Celino, Amine Dadoun, Stefano De Giorgis, Harm Delva, John Domingue, Michel Dumontier, Vincent Emonet, Marieke van Erp, Paola Espinoza-Arias, Omaima Fallatah, Sebastián Ferrada, Marc Gallofré Ocaña, Michalis Georgiou, Genet Asefa Gesese, Frances Gillis-Webber, Francesca Giovannetti, María Granados Buey, Ismail Harrando, Ivan Heibi, Vitor A. C. Horta, Laurine Huber, Federico Igne, Mohamad Yaser Jaradeh, Neha Keshan, Aneta Koleva, Bilal Koteich, Kabul Kurniawan, Mengya Liu, Chuangtao Ma, Lientje Maas, Martin Mansfield, Fabio Mariani, Eleonora Marzi, Sepideh Mesbah, Maheshkumar Mistry, Alba Catalina Morales Tirado, Anna Nguyen, Viet Bach Nguyen, Allard Oelen, Valentina Pasqual, Heiko Paulheim, Axel Polleres, Margherita Porena, Jan Portisch, Valentina Presutti, Kader Pustu-Iren, Ariam Rivas Mendez, Soheil Roshankish, Sebastian Rudolph, Harald Sack, Ahmad Sakor, Jaime Salas, Thomas Schleider, Meilin Shi, Gianmarco Spinaci, Chang Sun, Tabea Tietz, Molka Tounsi Dhouib, Alessandro Umbrico, Wouter van den Berg, Weiqin Xu
2020	C	`conf`	Sleeping Beauties in Case Law. JURIX Pedro V. Hernandez Serrano, Kody Moodley, Gijs van Dijck, Michel Dumontier
2020	J	`jnl`	Ten simple rules for making training materials FAIR. PLoS Comput. Biol. Leyla J. García, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis E. Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Dominguez Del Angel, Michel Dumontier, Kim T. Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah L. Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia W. G. van Gelder, Patricia M. Palagi
2020	J	`jnl`	Towards FAIR protocols and workflows: the OpenPREDICT use case. PeerJ Comput. Sci. Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier
2019	—	`conf`	A Linked Data Representation for Summary Statistics and Grouping Criteria. SAWSemStats@ISWC Jamie P. McCusker, Michel Dumontier, Shruthi Chari, Joanne S. Luciano, Deborah L. McGuinness
2019	—	`conf`	A Privacy-Preserving Infrastructure for Analyzing Personal Health Data in a Vertically Partitioned Scenario. MedInfo Chang Sun, Lianne Ippel, Johan van Soest, Birgit Wouters, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Ole Mussmann, Annemarie Koster, Carla van der Kallen, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier
2019	—	`conf`	Annotation of Existing Databases using Semantic Web Technologies: Making Data more FAIR. SWAT4HCLS Johan van Soest, Ananya Choudhury, Nikhil Gaikwad, Matthijs Sloep, Michel Dumontier, Andre Dekker
2019	J	`jnl`	BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
2019	J	`jnl`	Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings. BMC Bioinform. Remzi Celebi, Hüseyin Uyar, Erkan Yasar, Özgür Gümüs, Oguz Dikenelli, Michel Dumontier
2019	—	`conf`	FAIR Principles for Clinical Practice Guidelines in a Learning Health System. MedInfo Tiffany I. Leung, Michel Dumontier
2019	Misc	`conf`	Finding the evidence base using citation networks: Do 300 to 400 U.S. physicians die by suicide annually? AMIA Tiffany I. Leung, Sima Pendharkar, Chwen-Yuen Angie Chen, Michel Dumontier
2019	J	`jnl`	GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures. IEEE Access Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Hongfei Lin, Jian Wang, Michel Dumontier
2019	J	`jnl`	LUCE: A Blockchain Solution for monitoring data License accoUntability and CompliancE. CoRR Nadine Havelange, Michel Dumontier, Birgit Wouters, Jona Linde, David Townend, Arno Riedl, Visara Urovi
2019	J	`jnl`	MetaCrowd: Crowdsourcing Biomedical Metadata Quality Assessment. Hum. Comput. Amrapali Zaveri, Wei Hu, Michel Dumontier
2019	J	`jnl`	Privacy-Preserving Generalized Linear Models using Distributed Block Coordinate Descent. CoRR Erik-Jan van Kesteren, Chang Sun, Daniel L. Oberski, Michel Dumontier, Lianne Ippel
2019	—	`ed.`	Proceedings of the Workshop on Semantic Web Solutions for Large-Scale Biomedical Data Analytics co-located with 18th International Semantic Web Conference (ISWC 2019), Auckland, New Zealand, October 27th, 2019. SeWeBMeDa@ISWC Ali Hasnain, Vít Novácek, Michel Dumontier, Dietrich Rebholz-Schuhmann
2019	—	`conf`	Reflections on: Finding Melanoma Drugs Through a Probabilistic Knowledge Graph. JT@ISWC Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness
2019	C	`conf`	Similarity and Relevance of Court Decisions: A Computational Study on CJEU Cases. JURIX Kody Moodley, Pedro V. Hernandez Serrano, Gijs van Dijck, Michel Dumontier
2019	J	`jnl`	Towards FAIR protocols and workflows: The OpenPREDICT case study. CoRR Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier
2019	—	`conf`	Transformation and Integration of Heterogeneous Health Data in a Privacy-preserving Distributed Learning Infrastructure. SWAT4HCLS Chang Sun, Vincent Emonet, Johan van Soest, Annemarie Koster, Andre Dekker, Michel Dumontier
2018	J	`jnl`	A Web API Ecosystem through Feature-Based Reuse. IEEE Internet Comput. Ruben Verborgh, Michel Dumontier
2018	—	`conf`	A model for capturing provenance of assertions about chemical substances. SWAT4LS Kody Moodley, Amrapali Zaveri, Chunlei Wu, Michel Dumontier
2018	J	`jnl`	Analyzing Partitioned FAIR Health Data Responsibly. CoRR Chang Sun, Lianne Ippel, Birgit Wouters, Johan van Soest, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Marco Puts, Ole Mussmann, Annemarie Koster, Carla van der Kallen, David Townend, Andre Dekker, Michel Dumontier
2018	—	`conf`	CrowdED: Guideline for Optimal Crowdsourcing Experimental Design. WWW (Companion Volume) Amrapali Zaveri, Pedro Hernandez Serrano, Manisha Desai, Michel Dumontier
2018	—	`conf`	Data2Services: enabling automated conversion of data to services. SWAT4LS Vincent Emonet, Amrapali Zaveri, Alexander Malic, Andreea Grigoriu, Michel Dumontier
2018	J	`jnl`	Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths. Bioinform. Yijia Zhang, Wei Zheng, Hongfei Lin, Jian Wang, Zhihao Yang, Michel Dumontier
2018	—	`conf`	Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction using Linked Open Data. SWAT4LS Remzi Çelebi, Erkan Yasar, Hüseyin Uyar, Özgür Gümüs, Oguz Dikenelli, Michel Dumontier
2018	—	`conf`	Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. eScience Tobias Kuhn, Albert Meroño-Peñuela, Alexander Malic, Jorrit H. Poelen, Allen H. Hurlbert, Emilio Centeno Ortiz, Laura I. Furlong, Núria Queralt-Rosinach, Christine Chichester, Juan M. Banda, Egon L. Willighagen, Friederike Ehrhart, Chris T. A. Evelo, Tareq B. Malas, Michel Dumontier
2018	J	`jnl`	Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. CoRR Tobias Kuhn, Albert Meroño-Peñuela, Alexander Malic, Jorrit H. Poelen, Allen H. Hurlbert, Emilio Centeno, Laura I. Furlong, Núria Queralt-Rosinach, Christine Chichester, Juan M. Banda, Egon L. Willighagen, Friederike Ehrhart, Chris T. A. Evelo, Tareq B. Malas, Michel Dumontier
2018	—	`ed.`	Proceedings of the Second Workshop on Enabling Open Semantic Science co-located with 17th International Semantic Web Conference, SemSci@ISWC 2018, Monterey, California, USA, October 8-12th, 2018. SemSci@ISWC Daniel Garijo, Natalia Villanueva-Rosales, Tobias Kuhn, Tomi Kauppinen, Michel Dumontier
2018	—	`conf`	Using the Personal Health Train for Automated and Privacy-Preserving Analytics on Vertically Partitioned Data. MIE Johan van Soest, Chang Sun, Ole Mussmann, Marco Puts, Bob van den Berg, Alexander Malic, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier
2018	—	`conf`	Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings. SWAT4LS Maxat Kulmanov, Senay Kafkas, Andreas Karwath, Alexander Malic, Georgios V. Gkoutos, Michel Dumontier, Robert Hoehndorf
2017	J	`jnl`	BioSearch: a semantic search engine for Bio2RDF. Database J. Biol. Databases Curation Wei Hu, Honglei Qiu, Jiacheng Huang, Michel Dumontier
2017	—	`conf`	Bioschemas: schema.org for the Life Sciences. SWAT4LS Leyla J. García, Olga L. Giraldo, Alexander García Castro, Michel Dumontier, Bioschemas Community
2017	J	`jnl`	Cleaning by clustering: methodology for addressing data quality issues in biomedical metadata. BMC Bioinform. Wei Hu, Amrapali Zaveri, Honglei Qiu, Michel Dumontier
2017	J	`jnl`	Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud. Inf. Serv. Use Barend Mons, Cameron Neylon, Jan Velterop, Michel Dumontier, Luiz Olavo Bonino da Silva Santos, Mark D. Wilkinson
2017	J	`jnl`	Data Science - Methods, infrastructure, and applications. Data Sci. Michel Dumontier, Tobias Kuhn
2017	J	`jnl`	Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. J. Biomed. Informatics Kathleen M. Jagodnik, Simon Koplev, Sherry L. Jenkins, Lucila Ohno-Machado, Benedict Paten, Stephan C. Schürer, Michel Dumontier, Ruben Verborgh, Alex A. T. Bui, Peipei Ping, Neil J. McKenna, Ravi K. Madduri, Ajay Pillai, Avi Ma'ayan
2017	J	`jnl`	Discovering associations between adverse drug events using pattern structures and ontologies. J. Biomed. Semant. Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
2017	J	`jnl`	Drug-drug interaction discovery and demystification using Semantic Web technologies. J. Am. Medical Informatics Assoc. Adeeb Noor, Abdullah Assiri, Serkan Ayvaz, Connor Clark, Michel Dumontier
2017	J	`jnl`	Finding melanoma drugs through a probabilistic knowledge graph. PeerJ Comput. Sci. Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness
2017	J	`jnl`	Formalizing drug indications on the road to therapeutic intent. J. Am. Medical Informatics Assoc. Stuart J. Nelson, Tudor I. Oprea, Oleg Ursu, Cristian Bologa, Amrapali Zaveri, Jayme Holmes, Jeremy J. Yang, Stephen L. Mathias, Subramani Mani, Mark S. Tuttle, Michel Dumontier
2017	J	`jnl`	Genuine semantic publishing. Data Sci. Tobias Kuhn, Michel Dumontier
2017	J	`jnl`	Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Comput. Sci. Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand K. Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier
2017	J	`jnl`	Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Prepr. Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand K. Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier
2017	B	`conf`	Is Crowdsourcing Patient-Reported Outcomes the Future of Evidence-Based Medicine? A Case Study of Back Pain. AIME Mor Peleg, Tiffany I. Leung, Manisha Desai, Michel Dumontier
2017	J	`jnl`	Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data. J. Biomed. Semant. Richard D. Boyce, Erica A. Voss, Vojtech Huser, Lee Evans, Christian G. Reich, Jon D. Duke, Nicholas P. Tatonetti, Tal Lorberbaum, Michel Dumontier, Manfred Hauben, Magnus Wallberg, Lili Peng, Sara Dempster, Yongqun He, Anthony G. Sena, Vassilis Koutkias, Pantelis Natsiavas, Patrick B. Ryan
2017	—	`conf`	Machine Learning Based Drug Indication Prediction Using Linked Open Data. SWAT4LS Remzi Çelebi, Özgün Erten, Michel Dumontier
2017	J	`jnl`	Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO). J. Biomed. Informatics Maryam Panahiazar, Michel Dumontier, Olivier Gevaert
2017	—	`ed.`	Proceedings of the Workshop on Semantic Web Solutions for Large-scale Biomedical Data Analytics co-located with 14th Extended Semantic Web Conference, SeWeBMeDA@ESWC 2017, Portoroz, Slovenia, May 28, 2017. SeWeBMeDA@ESWC Ali Hasnain, Amit P. Sheth, Michel Dumontier, Dietrich Rebholz-Schuhmann
2017	—	`conf`	The SmartAPI Ecosystem for Making Web APIs FAIR. ISWC (Posters, Demos & Industry Tracks) Shima Dastgheib, Trish Whetzel, Amrapali Zaveri, Cyrus Afrasiabi, Pedro Assis, Paul Avillach, Kathleen M. Jagodnik, Gabor Korodi, Marcin Pilarczyk, Jeff de Pons, Stephan C. Schürer, Raymond Terryn, Ruben Verborgh, Chunlei Wu, Michel Dumontier
2017	—	`conf`	smartAPI: Towards a More Intelligent Network of Web APIs. ESWC (2) Amrapali Zaveri, Shima Dastgheib, Chunlei Wu, Trish Whetzel, Ruben Verborgh, Paul Avillach, Gabor Korodi, Raymond Terryn, Kathleen M. Jagodnik, Pedro Assis, Michel Dumontier
2016	J	`jnl`	A Web API ecosystem through feature-based reuse. CoRR Ruben Verborgh, Michel Dumontier
2016	J	`jnl`	Decentralized provenance-aware publishing with nanopublications. PeerJ Comput. Sci. Tobias Kuhn, Christine Chichester, Michael Krauthammer, Núria Queralt-Rosinach, Ruben Verborgh, George Giannakopoulos, Axel-Cyrille Ngonga Ngomo, Raffaele Viglianti, Michel Dumontier
2016	J	`jnl`	Decentralized provenance-aware publishing with nanopublications. PeerJ Prepr. Tobias Kuhn, Christine Chichester, Michael Krauthammer, Núria Queralt-Rosinach, Ruben Verborgh, George Giannakopoulos, Axel-Cyrille Ngonga Ngomo, Raffaele Viglianti, Michel Dumontier
2016	J	`jnl`	FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. J. Biomed. Semant. Jerven T. Bolleman, Christopher J. Mungall, Francesco Strozzi, Joachim Baran, Michel Dumontier, Raoul Jean Pierre Bonnal, Robert M. Buels, Robert Hoehndorf, Takatomo Fujisawa, Toshiaki Katayama, Peter J. A. Cock
2016	J	`jnl`	Finding melanoma drugs through a probabilistic knowledge graph. PeerJ Prepr. Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness
2016	J	`jnl`	Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Prepr. Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier
2016	J	`jnl`	Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. J. Biomed. Informatics Jonathan M. Mortensen, Natalie Telis, Jacob J. Hughey, Hua Fan-Minogue, Kimberly Van Auken, Michel Dumontier, Mark A. Musen
2016	—	`conf`	Making Linked Data SPARQL with the InterMine Biological Data Warehouse. SWAT4LS Maxime Déraspe, Gail Binkley, Daniela Butano, Matthew Chadwick, J. Michael Cherry, Justin Clark-Casey, Sergio Contrino, Jacques Corbeil, Joshua Heimbach, Kalpana Karra, Rachel Lyne, Julie M. Sullivan, Yo Yehudi, Gos Micklem, Michel Dumontier
2016	—	`conf`	Network Ranking Assisted Semantic Data Mining. IWBBIO Jan Kralj, Anze Vavpetic, Michel Dumontier, Nada Lavrac
2016	—	`conf`	Ontology Mapping for Life Science Linked Data. BMDID@ISWC Amrapali Zaveri, Michel Dumontier
2016	J	`jnl`	Overlap in drug-disease associations between clinical practice guidelines and drug structured product label indications. J. Biomed. Semant. Tiffany I. Leung, Michel Dumontier
2016	J	`jnl`	Predicting structured metadata from unstructured metadata. Database J. Biol. Databases Curation Lisa Posch, Maryam Panahiazar, Michel Dumontier, Olivier Gevaert
2016	J	`jnl`	Predicting structured metadata from unstructured metadata. Database J. Biol. Databases Curation Lisa Posch, Maryam Panahiazar, Michel Dumontier, Olivier Gevaert
2016	J	`jnl`	Publishing DisGeNET as nanopublications. Semantic Web Núria Queralt-Rosinach, Tobias Kuhn, Christine Chichester, Michel Dumontier, Ferran Sanz, Laura I. Furlong
2016	—	`conf`	Semantic Research Platform for Model Organisms. BMDID@ISWC Maxime Déraspe, Kalpana Karra, Gail Binkley, Julie M. Sullivan, Gos Micklem, Jacques Corbeil, J. Michael Cherry, Michel Dumontier
2016	J	`jnl`	The digital revolution in phenotyping. Briefings Bioinform. Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon, Prashanti Manda, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg, Michel Dumontier
2016	J	`jnl`	The structure and dynamics of the research fronts in HIV/AIDS research: part-whole and adaptive specialization. CoRR David Fajardo-Ortiz, Malaquias Lopez-Cervantes, Luis Duran, Michel Dumontier, Miguel Lara, Hector Ochoa, Víctor M. Castaño
2016	J	`jnl`	Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop. J. Biomed. Semant. Karin Verspoor, Anika Oellrich, Nigel Collier, Tudor Groza, Philippe Rocca-Serra, Larisa N. Soldatova, Michel Dumontier, Nigam Shah
2016	—	`conf`	Using LASSO Regression to Predict Rheumatoid Arthritis Treatment Efficacy. CRI David J. Odgers, Natalie Telis, Heather Hall, Michel Dumontier
2015	—	`conf`	A Preliminary Investigation into SPARQL Query Complexity and Federation in Bio2RDF. AMW Carlos Buil-Aranda, Martín Ugarte, Marcelo Arenas, Michel Dumontier
2015	J	`jnl`	Achieving human and machine accessibility of cited data in scholarly publications. PeerJ Comput. Sci. Joan Starr, Eleni Castro, Mercè Crosas, Michel Dumontier, Robert R. Downs, Ruth E. Duerr, Laurel L. Haak, Melissa A. Haendel, Iván Herman, Simon Hodson, Joe Hourclé, John Ernest Kratz, Jennifer Lin, Lars Holm Nielsen, Amy Nurnberger, Stefan Pröll, Andreas Rauber, Simone Sacchi, Arthur P. Smith, Michael Taylor, Tim Clark
2015	J	`jnl`	Achieving human and machine accessibility of cited data in scholarly publications. PeerJ Prepr. Joan Starr, Eleni Castro, Mercè Crosas, Michel Dumontier, Robert R. Downs, Ruth E. Duerr, Laurel L. Haak, Melissa A. Haendel, Iván Herman, Simon Hodson, Joe Hourclé, John Ernest Kratz, Jennifer Lin, Lars Holm Nielsen, Amy Nurnberger, Stefan Pröll, Andreas Rauber, Simone Sacchi, Arthur P. Smith, Michael Taylor, Tim Clark
2015	J	`jnl`	An Ebola virus-centered knowledge base. Database J. Biol. Databases Curation Maulik R. Kamdar, Michel Dumontier
2015	J	`jnl`	An evidence-based approach to identify aging-related genes in Caenorhabditis elegans. BMC Bioinform. Alison Callahan, Juan Cifuentes, Michel Dumontier
2015	—	`conf`	Comparing Drug-Disease Associations in Clinical Practice Guideline Recommendations and Drug Product Label Indications. MedInfo Tiffany I. Leung, Michel Dumontier
2015	Misc	`conf`	Drug-Disease Associations in Guidelines, Drug Labels, and Practice. AMIA Tiffany I. Leung, Michel Dumontier
2015	—	`conf`	Exposing Provenance Metadata Using Different RDF Models. SWAT4LS Gang Fu, Evan Bolton, Núria Queralt-Rosinach, Laura Inés Furlong, Vinh Nguyen, Amit P. Sheth, Olivier Bodenreider, Michel Dumontier
2015	J	`jnl`	Exposing Provenance Metadata Using Different RDF Models. CoRR Gang Fu, Evan Bolton, Núria Queralt Rosinach, Laura Inés Furlong, Vinh Nguyen, Amit P. Sheth, Olivier Bodenreider, Michel Dumontier
2015	—	`ed.`	Informal Proceedings of the 4th International Workshop on OWL Reasoner Evaluation (ORE-2015) co-located with the 28th International Workshop on Description Logics (DL 2015), Athens, Greece, June 6, 2015. ORE Michel Dumontier, Birte Glimm, Rafael S. Gonçalves, Matthew Horridge, Ernesto Jiménez-Ruiz, Nicolas Matentzoglu, Bijan Parsia, Giorgos B. Stamou, Giorgos Stoilos
2015	—	`conf`	Link Analysis of Life Science Linked Data. ISWC (2) Wei Hu, Honglei Qiu, Michel Dumontier
2015	J	`jnl`	Making Digital Artifacts on the Web Verifiable and Reliable. CoRR Tobias Kuhn, Michel Dumontier
2015	J	`jnl`	Making Digital Artifacts on the Web Verifiable and Reliable. IEEE Trans. Knowl. Data Eng. Tobias Kuhn, Michel Dumontier
2015	J	`jnl`	On Reasoning with RDF Statements about Statements using Singleton Property Triples. CoRR Vinh Nguyen, Olivier Bodenreider, Krishnaprasad Thirunarayan, Gang Fu, Evan Bolton, Núria Queralt Rosinach, Laura Inés Furlong, Michel Dumontier, Amit P. Sheth
2015	J	`jnl`	Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies. BMC Medical Informatics Decis. Mak. Matthias Samwald, José Antonio Miñarro-Giménez, Richard D. Boyce, Robert R. Freimuth, Klaus-Peter Adlassnig, Michel Dumontier
2015	—	`conf`	Provenance-Centered Dataset of Drug-Drug Interactions. ISWC (2) Juan M. Banda, Tobias Kuhn, Nigam H. Shah, Michel Dumontier
2015	J	`jnl`	Provenance-Centered Dataset of Drug-Drug Interactions. CoRR Juan M. Banda, Tobias Kuhn, Nigam H. Shah, Michel Dumontier
2015	J	`jnl`	PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. J. Cheminformatics Gang Fu, Colin R. Batchelor, Michel Dumontier, Janna Hastings, Egon L. Willighagen, Evan Bolton
2015	—	`conf`	Publishing Without Publishers: A Decentralized Approach to Dissemination, Retrieval, and Archiving of Data. ISWC (1) Tobias Kuhn, Christine Chichester, Michael Krauthammer, Michel Dumontier
2015	J	`jnl`	SPARQL-enabled identifier conversion with Identifiers.org. Bioinform. Sarala M. Wimalaratne, Jerven T. Bolleman, Nick S. Juty, Toshiaki Katayama, Michel Dumontier, Nicole Redaschi, Nicolas Le Novère, Henning Hermjakob, Camille Laibe
2015	J	`jnl`	Special issue on bio-ontologies and phenotypes. J. Biomed. Semant. Larisa N. Soldatova, Nigel Collier, Anika Oellrich, Tudor Groza, Karin Verspoor, Philippe Rocca-Serra, Michel Dumontier, Nigam H. Shah
2015	—	`ed.`	The Semantic Web - ISWC 2015 - 14th International Semantic Web Conference, Bethlehem, PA, USA, October 11-15, 2015, Proceedings, Part I ISWC (1) Marcelo Arenas, Óscar Corcho, Elena Simperl, Markus Strohmaier, Mathieu d'Aquin, Kavitha Srinivas, Paul Groth, Michel Dumontier, Jeff Heflin, Krishnaprasad Thirunarayan, Steffen Staab
2015	—	`ed.`	The Semantic Web - ISWC 2015 - 14th International Semantic Web Conference, Bethlehem, PA, USA, October 11-15, 2015, Proceedings, Part II ISWC (2) Marcelo Arenas, Óscar Corcho, Elena Simperl, Markus Strohmaier, Mathieu d'Aquin, Kavitha Srinivas, Paul Groth, Michel Dumontier, Jeff Heflin, Krishnaprasad Thirunarayan, Steffen Staab
2015	J	`jnl`	The center for expanded data annotation and retrieval. J. Am. Medical Informatics Assoc. Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser
2015	J	`jnl`	Toward a complete dataset of drug-drug interaction information from publicly available sources. J. Biomed. Informatics Serkan Ayvaz, John R. Horn, Oktie Hassanzadeh, Qian Zhu, Johann Stan, Nicholas P. Tatonetti, Santiago Vilar, Mathias Brochhausen, Matthias Samwald, Majid Rastegar-Mojarad, Michel Dumontier, Richard D. Boyce
2014	—	`conf`	A Nanopublication Framework for Biological Networks using Cytoscape.js. ICBO Jamie P. McCusker, Rui Yan, Kusum Solanki, John S. Erickson, Cynthia Chang, Michel Dumontier, Jonathan S. Dordick, Deborah L. McGuinness
2014	J	`jnl`	Automatically exposing OpenLifeData via SADI semantic Web Services. J. Biomed. Semant. Alejandro Rodríguez González, Alison Callahan, José Cruz-Toledo, Adrian Garcia, Mikel Egaña Aranguren, Michel Dumontier, Mark D. Wilkinson
2014	Misc	`conf`	Automating Identification of Multiple Chronic Conditions in Clinical Practice Guidelines. AMIA Tiffany I. Leung, Hawre Jalal, Donna M. Zulman, Douglas K. Owens, Mark A. Musen, Michel Dumontier, Mary K. Goldstein
2014	—	`conf`	Bio2RDF Release 3: A larger, more connected network of Linked Data for the Life Sciences. ISWC (Posters & Demos) Michel Dumontier, Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Vincent Emonet, François Belleau, Arnaud Droit
2014	B	`conf`	Erratum: Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data. ESWC Tobias Kuhn, Michel Dumontier
2014	J	`jnl`	Hash-URIs for Verifiable, Immutable, and Permanent Digital Artifacts. CoRR Tobias Kuhn, Michel Dumontier
2014	J	`jnl`	Mouse model phenotypes provide information about human drug targets. Bioinform. Robert Hoehndorf, Tanya Hiebert, Nigel W. Hardy, Paul N. Schofield, Georgios V. Gkoutos, Michel Dumontier
2014	J	`jnl`	Publishing without Publishers: a Decentralized Approach to Dissemination, Retrieval, and Archiving of Data. CoRR Tobias Kuhn, Christine Chichester, Michel Dumontier, Michael Krauthammer
2014	J	`jnl`	Selected papers from the 16th Annual Bio-Ontologies Special Interest Group Meeting. J. Biomed. Semant. Larisa N. Soldatova, Philippe Rocca-Serra, Michel Dumontier, Nigam H. Shah
2014	J	`jnl`	Special issue on Linked Data for Health Care and the Life Sciences. Semantic Web Mikel Egaña Aranguren, Jesualdo Tomás Fernández-Breis, Michel Dumontier
2014	J	`jnl`	The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf
2014	B	`conf`	Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data. ESWC Tobias Kuhn, Michel Dumontier
2013	J	`jnl`	1st Semantic Web Technologies for Libraries and Readers (STLR 2011). Bull. IEEE Tech. Comm. Digit. Libr. Alison Callahan, Michel Dumontier, Jodi Schneider, Lars Svensson
2013	—	`conf`	A Large-scale Gene-centric Semantic Web Knowledge Base for Molecular Biology. ORE Jose Cruz-Toledo, Alison Callahan, Michel Dumontier
2013	—	`conf`	An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics. MedInfo Matthias Samwald, Robert R. Freimuth, Joanne S. Luciano, Simon M. Lin, Robert L. Powers, M. Scott Marshall, Klaus-Peter Adlassnig, Michel Dumontier, Richard D. Boyce
2013	B	`conf`	Bio2RDF Release 2: Improved Coverage, Interoperability and Provenance of Life Science Linked Data. ESWC Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Michel Dumontier
2013	J	`jnl`	Evaluation of research in biomedical ontologies. Briefings Bioinform. Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos
2013	J	`jnl`	Evaluation of the OQuaRE framework for ontology quality. Expert Syst. Appl. Astrid Duque-Ramos, Jesualdo Tomás Fernández-Breis, Miguela Iniesta-Moreno, Michel Dumontier, Mikel Egaña Aranguren, Stefan Schulz, Nathalie Aussenac-Gilles, Robert Stevens
2013	—	`conf`	HyQue: A Semantic Web tool for evaluating scientific hypotheses. ICBO Alison Callahan, Michel Dumontier
2013	—	`conf`	Looking into Reactome through Biopax Lens. CSWS Laleh Kazemzadeh, Helena F. Deus, Michel Dumontier, Frank Barry
2013	J	`jnl`	Ontology-Based Querying with Bio2RDF's Linked Open Data. J. Biomed. Semant. Alison Callahan, Jose Cruz-Toledo, Michel Dumontier
2013	J	`jnl`	Ovopub: Modular data publication with minimal provenance CoRR Alison Callahan, Michel Dumontier
2013	—	`ed.`	Proceedings of the 4th Canadian Semantic Web Symposium part of the Semantic Trilogy 2013, Montreal, QC, Canada, July 10th, 2013. CSWS René Witte, Christopher J. O. Baker, Greg Butler, Michel Dumontier
2013	—	`ed.`	Proceedings of the 4th International Conference on Biomedical Ontology, ICBO 2013, Montreal, Canada, July 7-12, 2013. ICBO Michel Dumontier, Robert Hoehndorf, Christopher J. O. Baker
2013	J	`jnl`	Selected papers from the 15th Annual Bio-Ontologies Special Interest Group Meeting. J. Biomed. Semant. Larisa N. Soldatova, Susanna-Assunta Sansone, Michel Dumontier, Nigam H. Shah
2013	J	`jnl`	State of the art and open challenges in community-driven knowledge curation. J. Biomed. Informatics Tudor Groza, Tania Tudorache, Michel Dumontier
2013	—	`conf`	The Web as a Distributed Biochemical Reactor: Semantically Enabled Metabolic Fate Prediction. ICBO Leonid L. Chepelev, Michel Dumontier
2012	J	`jnl`	Aptamer base: a collaborative knowledge base to describe aptamers and SELEX experiments. Database J. Biol. Databases Curation Jose Cruz-Toledo, Maureen McKeague, Xueru Zhang, Amanda Giamberardino, Erin McConnell, Tariq Francis, Maria C. DeRosa, Michel Dumontier
2012	J	`jnl`	Building an HIV data mashup using Bio2RDF. Briefings Bioinform. Marc-Alexandre Nolin, Michel Dumontier, François Belleau, Jacques Corbeil
2012	B	`conf`	Evaluating Scientific Hypotheses Using the SPARQL Inferencing Notation. ESWC Alison Callahan, Michel Dumontier
2012	J	`jnl`	Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics. Bioinform. Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos
2012	—	`conf`	Improved Dataset Coverage and Interoperability with Bio2RDF Release 2. SWAT4LS Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Dana Klassen, Giovanni Tumarello, Michel Dumontier
2012	J	`jnl`	Linked Data in Drug Discovery. IEEE Internet Comput. Michel Dumontier, David J. Wild
2012	—	`conf`	Molecular Symmetry and Specialization of Atomic Connectivity by Class-based Reasoning of Chemical Structure. OWLED Michel Dumontier
2012	—	`conf`	Role-based representation and inference of biochemical processes. ICBO Christian Boelling, Michel Dumontier, Michael Weidlich, Hermann-Georg Holzhütter
2012	J	`jnl`	Selected papers from the 14th Annual Bio-Ontologies Special Interest Group Meeting. J. Biomed. Semant. Larisa N. Soldatova, Susanna-Assunta Sansone, Michel Dumontier, Nigam H. Shah
2012	J	`jnl`	Self-organizing ontology of biochemically relevant small molecules. BMC Bioinform. Leonid L. Chepelev, Janna Hastings, Marcus Ennis, Christoph Steinbeck, Michel Dumontier
2012	J	`jnl`	Towards quantitative measures in applied ontology CoRR Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos
2012	—	`conf`	YummyData: Measuring the "Sparkliness" of Biomedical Sparql Endpoints. SWAT4LS Andrea Splendiani, Johan Nyström-Persson, Michel Dumontier, Yasunori Yamamoto
2011	J	`jnl`	A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
2011	J	`jnl`	Chemical Entity Semantic Specification: Knowledge representation for efficient semantic cheminformatics and facile data integration. J. Cheminformatics Leonid L. Chepelev, Michel Dumontier
2011	—	`conf`	Chemical Hazard Estimation and Method Comparison with OWL-Encoded Toxicity Decision Trees. OWLED Leonid L. Chepelev, Dana Klassen, Michel Dumontier
2011	J	`jnl`	HyQue: evaluating hypotheses using Semantic Web technologies. J. Biomed. Semant. Alison Callahan, Michel Dumontier, Nigam H. Shah
2011	J	`jnl`	Integrating systems biology models and biomedical ontologies. BMC Syst. Biol. Robert Hoehndorf, Michel Dumontier, John H. Gennari, Sarala M. Wimalaratne, Bernard de Bono, Daniel L. Cook, Georgios V. Gkoutos
2011	J	`jnl`	Integration and publication of heterogeneous text-mined relationships on the Semantic Web. J. Biomed. Semant. Adrien Coulet, Yael Garten, Michel Dumontier, Russ B. Altman, Mark A. Musen, Nigam H. Shah
2011	J	`jnl`	MoSuMo: A Semantic Web service to generate electrostatic potentials across solvent excluded protein surfaces and binding pockets. Comput. Graph. Alexander Gawronski, Michel Dumontier
2011	—	`ed.`	Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED 2011), San Francisco, California, USA, June 5-6, 2011 OWLED Michel Dumontier, Mélanie Courtot
2011	J	`jnl`	Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics. BMC Bioinform. Leonid L. Chepelev, Alexandre Riazanov, Alexandre Kouznetsov, Hong Sang Low, Michel Dumontier, Christopher J. O. Baker
2011	—	`conf`	SADI for GMOD: Semantic Web Services for Model Organism Databases. CSWS Benjamin P. Vandervalk, Michel Dumontier, E. Luke McCarthy, Mark D. Wilkinson
2011	J	`jnl`	Semantic Web integration of Cheminformatics resources with the SADI framework. J. Cheminformatics Leonid L. Chepelev, Michel Dumontier
2011	J	`jnl`	Taking flight with OWL2. Semantic Web Michel Dumontier
2011	J	`jnl`	The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data. Appl. Ontology Robert Hoehndorf, Colin R. Batchelor, Thomas Bittner, Michel Dumontier, Karen Eilbeck, Rob Knight, Chris Mungall, Jane S. Richardson, Jesse Stombaugh, Eric Westhof, Craig L. Zirbel, Neocles Leontis
2011	J	`jnl`	The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. J. Biomed. Semant. Joanne S. Luciano, Bosse Andersson, Colin R. Batchelor, Olivier Bodenreider, Tim Clark, Christine K. Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter J. Kos, Julia Kozlovsky, Timothy Lebo, M. Scott Marshall, Jamie P. McCusker, Deborah L. McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L. Powers, Eric Prud'hommeaux, Matthias Samwald, Lynn M. Schriml, Peter J. Tonellato, Patricia L. Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier
2011	—	`conf`	Towards an Interoperable Information Infrastructure Providing Decision Support for Genomic Medicine. MIE Matthias Samwald, Holger Stenzhorn, Michel Dumontier, M. Scott Marshall, Joanne Luciano, Klaus-Peter Adlassnig
2011	J	`jnl`	Towards an interoperable information infrastructure providing decision support for genomic medicine CoRR Matthias Samwald, Holger Stenzhorn, Michel Dumontier, M. Scott Marshall, Joanne Luciano, Klaus-Peter Adlassnig
2010	J	`jnl`	Building an effective Semantic Web for health care and the life sciences. Semantic Web Michel Dumontier
2010	J	`jnl`	Modeling and querying graphical representations of statistical data. J. Web Semant. Michel Dumontier, Leo Ferres, Natalia Villanueva-Rosales
2010	J	`jnl`	RKB: a Semantic Web knowledge base for RNA. J. Biomed. Semant. Jose Cruz-Toledo, Michel Dumontier, Marc Parisien, François Major
2010	C	`conf`	Realism for scientific ontologies. FOIS Michel Dumontier, Robert Hoehndorf
2010	—	`conf`	Relational Patterns in OWL and Their Application to OBO. OWLED Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Heinrich Herre, Dietrich Rebholz-Schuhmann
2010	J	`jnl`	Relations as patterns: bridging the gap between OBO and OWL. BMC Bioinform. Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Janet Kelso, Dietrich Rebholz-Schuhmann, Heinrich Herre
2010	—	`conf`	Representing Chemicals Using OWL, Description Graphs and Rules. OWLED Janna Hastings, Michel Dumontier, Duncan Hull, Matthew Horridge, Christoph Steinbeck, Robert Stevens, Ulrike Sattler, Tertia Hörne, Katarina Britz
2009	—	`conf`	A Platform for Reasoning with OWL-EL Knowledge Bases in a Peer-to-Peer Environment. OWLED Alexander De Leon Battista, Michel Dumontier
2009	—	`conf`	Conjunctive Query Answering in Distributed Ontology Systems for Ontologies with Large OWL ABoxes. OWLED Xueying Chen, Michel Dumontier
2009	—	`conf`	Modeling tryptic digestion on the Cell BE processor. CCECE James R. Green, Hanan Mahmoud, Michel Dumontier
2009	—	`conf`	PDB2RDF - Exposing Molecular and Experimental Knowledge on the Semantic Web. I-SEMANTICS Jose Cruz-Toledo, Alexander De Leon Battista, Michel Dumontier
2009	J	`jnl`	Towards pharmacogenomics knowledge discovery with the semantic web. Briefings Bioinform. Michel Dumontier, Natalia Villanueva-Rosales
2008	—	`conf`	Chemical Knowledge for the Semantic Web. DILS Mykola Konyk, Alexander De Leon Battista, Michel Dumontier
2008	J	`jnl`	GridCell: a stochastic particle-based biological system simulator. BMC Syst. Biol. Laurier Boulianne, Sevin Al Assaad, Michel Dumontier, Warren J. Gross
2008	—	`conf`	Modeling Life Science Knowledge with OWL 1.1. OWLED (Spring) Michel Dumontier, Natalia Villanueva-Rosales
2008	—	`conf`	Publishing OWL Ontologies with Presto. OWLED (Spring) Alex DeLeon, Michel Dumontier
2008	A*	`conf`	Report on semantic web for health care and life sciences workshop. WWW Huajun Chen, Kei-Hoi Cheung, Michel Dumontier, Eric Prud'hommeaux, Alan Ruttenberg, Susie Stephens, Yimin Wang
2008	—	`conf`	Semantic Annotation and Question Answering of Statistical Graphs. MICAI Michel Dumontier, Leo Ferres, Natalia Villanueva-Rosales
2008	—	`conf`	Situational Modeling: Defining Molecular Roles in Biochemical Pathways and Reactions. OWLED Michel Dumontier
2008	J	`jnl`	yOWL: An ontology-driven knowledge base for yeast biologists. J. Biomed. Informatics Natalia Villanueva-Rosales, Michel Dumontier
2007	—	`conf`	A stochastic particle-based biological system simulator. SCSC Laurier Boulianne, Michel Dumontier, Warren J. Gross
2007	—	`conf`	Describing Chemical Functional Groups in OWL-DL for the Classification of Chemical Compounds. OWLED Natalia Villanueva-Rosales, Michel Dumontier
2007	—	`conf`	SMART: A Web-Based, Ontology-Driven, Semantic Web Query Answering Application. Semantic Web Challenge Alexander De Leon Battista, Natalia Villanueva-Rosales, Myroslav Palenychka, Michel Dumontier
2007	—	`conf`	Semantic Query Answering with Time-Series Graphs. EDOCW Leo Ferres, Michel Dumontier, Natalia Villanueva-Rosales
2007	—	`conf`	Three-Layer OWL Ontology Design. WoMO Michel Dumontier, Natalia Villanueva-Rosales
2006	J	`jnl`	Domain-based small molecule binding site annotation. BMC Bioinform. Kevin A. Snyder, Howard J. Feldman, Michel Dumontier, John J. Salama, Christopher W. V. Hogue
2002	J	`jnl`	NBLAST: a cluster variant of BLAST for NxN comparisons. BMC Bioinform. Michel Dumontier, Christopher W. V. Hogue
2002	J	`jnl`	SeqHound: biological sequence and structure database as a platform for bioinformatics research. BMC Bioinform. Katerina Michalickova, Gary D. Bader, Michel Dumontier, Hao Lieu, Doron Betel, Ruth Isserlin, Christopher W. V. Hogue
2002	J	`jnl`	Species-specific protein sequence and fold optimizations. BMC Bioinform. Michel Dumontier, Katerina Michalickova, Christopher W. V. Hogue