Michal Linial - RankMe

72 papers A 3B 5C 3Journal 52Unranked 7

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Advancing causal inference in medicine using biobank data. J. Biomed. Informatics Hadasa Kaufman, Nadav Rappoport, Amir Gilad, Michal Linial
2025	J	`jnl`	InterFeat: An Automated Pipeline for Finding Interesting Hypotheses in Structured Biomedical Data. CoRR Dan Ofer, Michal Linial, Dafna Shahaf
2024	J	`jnl`	Automated annotation of disease subtypes. J. Biomed. Informatics Dan Ofer, Michal Linial
2024	J	`jnl`	Discovering predisposing genes for hereditary breast cancer using deep learning. Briefings Bioinform. Gal Passi, Sari Lieberman, Fouad Zahdeh, Omer Murik, Paul Renbaum, Rachel Beeri, Michal Linial, Dalit May, Ephrat Levy-Lahad, Dina Schneidman-Duhovny
2023	J	`jnl`	Whats next? Forecasting scientific research trends. CoRR Dan Ofer, Michal Linial
2022	J	`jnl`	ProteinBERT: a universal deep-learning model of protein sequence and function. Bioinform. Nadav Brandes, Dan Ofer, Yam Peleg, Nadav Rappoport, Michal Linial
2020	J	`jnl`	BIRD: identifying cell doublets via biallelic expression from single cells. Bioinform. Kerem Wainer-Katsir, Michal Linial
2020	—	`conf`	Functional Evolutionary Modeling Exposes Overlooked Protein-Coding Genes Involved in Cancer. ISBRA Nadav Brandes, Nathan Linial, Michal Linial
2020	B	`conf`	PWAS: Proteome-Wide Association Study. RECOMB Nadav Brandes, Nathan Linial, Michal Linial
2019	J	`jnl`	A cell-based probabilistic approach unveils the concerted action of miRNAs. PLoS Comput. Biol. Shelly Mahlab-Aviv, Nathan Linial, Michal Linial
2016	J	`jnl`	ASAP: a machine learning framework for local protein properties. Database J. Biol. Databases Curation Nadav Brandes, Dan Ofer, Michal Linial
2015	J	`jnl`	ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus. PLoS Comput. Biol. Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost
2015	J	`jnl`	Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus. Bioinform. Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost
2015	J	`jnl`	ProFET: Feature engineering captures high-level protein functions. Bioinform. Dan Ofer, Michal Linial
2015	J	`jnl`	ProtoBug: functional families from the complete proteomes of insects. Database J. Biol. Databases Curation Nadav Rappoport, Michal Linial
2014	J	`jnl`	Entropy-driven partitioning of the hierarchical protein space. Bioinform. Nadav Rappoport, Amos Stern, Nathan Linial, Michal Linial
2014	J	`jnl`	ISCB/SPRINGER series in computational biology. Bioinform. Andreas W. M. Dress, Michal Linial, Olga G. Troyanskaya, Martin Vingron
2014	J	`jnl`	NeuroPID: a classifier of neuropeptide precursors. Nucleic Acids Res. Solange Karsenty, Nadav Rappoport, Dan Ofer, Adva Zair, Michal Linial
2014	J	`jnl`	NeuroPID: a predictor for identifying neuropeptide precursors from metazoan proteomes. Bioinform. Dan Ofer, Michal Linial
2014	J	`jnl`	Speed Controls in Translating Secretory Proteins in Eukaryotes - an Evolutionary Perspective. PLoS Comput. Biol. Shelly Mahlab, Michal Linial
2014	J	`jnl`	The automated function prediction SIG looks back at 2013 and prepares for 2014. Bioinform. Mark N. Wass, Sean D. Mooney, Michal Linial, Predrag Radivojac, Iddo Friedberg
2014	J	`jnl`	miRror-Suite: decoding coordinated regulation by microRNAs. Database J. Biol. Databases Curation Yitzhak Friedman, Solange Karsenty, Michal Linial
2013	J	`jnl`	Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex. BMC Bioinform. Nadav Rappoport, Michal Linial
2013	J	`jnl`	Mirror2.0: a Platform for Assessing the Joint Action of microRNAs in Cell regulation. J. Bioinform. Comput. Biol. Yitzhak Friedman, Michal Linial
2013	—	`conf`	Translation Efficiency of Synaptic Proteins and Its Coding Sequence Determinants. BIOINFORMATICS Shelly Mahlab, Itai Linial, Michal Linial
2012	J	`jnl`	Paving the future: finding suitable ISMB venues. Bioinform. Burkhard Rost, Terry Gaasterland, Thomas Lengauer, Michal Linial, Scott Markel, B. J. Morrison McKay, Reinhard Schneider, Paul Horton, Janet Kelso
2012	J	`jnl`	ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree. Nucleic Acids Res. Nadav Rappoport, Solange Karsenty, Amos Stern, Nathan Linial, Michal Linial
2012	J	`jnl`	Susceptibility of the human pathways graphs to fragmentation by small sets of microRNAs. Bioinform. Guy Naamati, Yitzhak Friedman, Ohad Balaga, Michal Linial
2012	J	`jnl`	Viral Proteins Acquired from a Host Converge to Simplified Domain Architectures. PLoS Comput. Biol. Nadav Rappoport, Michal Linial
2011	J	`jnl`	ARISTO: ontological classification of small molecules by electron ionization-mass spectrometry. Nucleic Acids Res. Manor Askenazi, Michal Linial
2011	J	`jnl`	Generative probabilistic models for protein-protein interaction networks - the biclique perspective. Bioinform. Regev Schweiger, Michal Linial, Nathan Linial
2011	B	`conf`	Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles. RECOMB Yosef Prat, Menachem Fromer, Michal Linial, Nathan Linial
2011	J	`jnl`	Recovering key biological constituents through sparse representation of gene expression. Bioinform. Yosef Prat, Menachem Fromer, Nathan Linial, Michal Linial
2010	J	`jnl`	A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes. Bioinform. Guy Naamati, Manor Askenazi, Michal Linial
2010	J	`jnl`	Exposing the co-adaptive potential of protein-protein interfaces through computational sequence design. Bioinform. Menachem Fromer, Michal Linial
2010	J	`jnl`	MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets. Bioinform. Yitzhak Friedman, Guy Naamati, Michal Linial
2010	J	`jnl`	PANDORA: analysis of protein and peptide sets through the hierarchical integration of annotations. Nucleic Acids Res. Nadav Rappoport, Menachem Fromer, Regev Schweiger, Michal Linial
2010	J	`jnl`	SPRINT: side-chain prediction inference toolbox for multistate protein design. Bioinform. Menachem Fromer, Chen Yanover, Amir Harel, Ori Shachar, Yair Weiss, Michal Linial
2010	J	`jnl`	UFFizi: a generic platform for ranking informative features. BMC Bioinform. Assaf Gottlieb, Roy Varshavsky, Michal Linial, David Horn
2009	J	`jnl`	ClanTox: a classifier of short animal toxins. Nucleic Acids Res. Guy Naamati, Manor Askenazi, Michal Linial
2008	—	`conf`	08101 Abstracts Collection - Computational Proteomics. Computational Proteomics Knut Reinert, Christian G. Huber, Kathrin Marcus, Michal Linial, Oliver Kohlbacher
2008	—	`ed.`	Bioinformatics Research and Development, Second International Conference, BIRD 2008, Vienna, Austria, July 7-9, 2008, Proceedings BIRD Mourad Elloumi, Josef Küng, Michal Linial, Robert F. Murphy, Kristan Schneider, Cristian Toma
2008	—	`ed.`	Computational Proteomics, 02.03. - 07.03.2008 Computational Proteomics Christian G. Huber, Oliver Kohlbacher, Michal Linial, Kathrin Marcus, Knut Reinert
2008	C	`conf`	Connect the dots: exposing hidden protein family connections from the entire sequence tree. ECCB Yaniv Loewenstein, Michal Linial
2008	A	`conf`	Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space. ISMB Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial
2008	J	`jnl`	ISMB 2008 Toronto. PLoS Comput. Biol. Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, Burkhard Rost
2007	—	`conf`	Clustering Algorithms Optimizer: A Framework for Large Datasets. ISBRA Roy Varshavsky, David Horn, Michal Linial
2007	J	`jnl`	EVEREST: a collection of evolutionary conserved protein domains. Nucleic Acids Res. Elon Portugaly, Nathan Linial, Michal Linial
2007	J	`jnl`	Unsupervised feature selection under perturbations: meeting the challenges of biological data. Bioinform. Roy Varshavsky, Assaf Gottlieb, David Horn, Michal Linial
2007	C	`conf`	When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global Features. WABI Roy Varshavsky, Menachem Fromer, Amit Man, Michal Linial
2006	J	`jnl`	EVEREST: automatic identification and classification of protein domains in all protein sequences. BMC Bioinform. Elon Portugaly, Amir Harel, Nathan Linial, Michal Linial
2006	—	`conf`	Novel Unsupervised Feature Filtering of Biological Data. ISMB (Supplement of Bioinformatics) Roy Varshavsky, Assaf Gottlieb, Michal Linial, David Horn
2006	J	`jnl`	The Secrets of a Functional Synapse - From a Computational and Experimental Viewpoint. BMC Bioinform. Michal Linial
2005	J	`jnl`	Automatic detection of false annotations via binary property clustering. BMC Bioinform. Noam Kaplan, Michal Linial
2005	—	`conf`	COMPACT: A Comparative Package for Clustering Assessment. ISPA Workshops Roy Varshavsky, Michal Linial, David Horn
2005	—	`conf`	Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains. ISMB (Supplement of Bioinformatics) Tali Sadka, Michal Linial
2005	J	`jnl`	Predicting fold novelty based on ProtoNet hierarchical classification. Bioinform. Ilona Kifer, Ori Sasson, Michal Linial
2005	J	`jnl`	ProTarget: automatic prediction of protein structure novelty. Nucleic Acids Res. Ori Sasson, Michal Linial
2005	J	`jnl`	ProTeus: identifying signatures in protein termini. Nucleic Acids Res. Iris Bahir, Michal Linial
2005	J	`jnl`	ProtoNet 4.0: A hierarchical classification of one million protein sequences. Nucleic Acids Res. Noam Kaplan, Ori Sasson, Uri Inbar, Moriah Friedlich, Menachem Fromer, Hillel Fleischer, Elon Portugaly, Nathan Linial, Michal Linial
2004	J	`jnl`	A functional hierarchical organization of the protein sequence space. BMC Bioinform. Noam Kaplan, Moriah Friedlich, Menachem Fromer, Michal Linial
2003	J	`jnl`	ProtoNet: hierarchical classification of the protein space. Nucleic Acids Res. Ori Sasson, Avishay Vaaknin, Hillel Fleischer, Elon Portugaly, Yonatan Bilu, Nathan Linial, Michal Linial
2002	C	`conf`	Functional Consequences in Metabolic Pathways from Phylogenetic Profiles. WABI Yonatan Bilu, Michal Linial
2002	J	`jnl`	Selecting targets for structural determination by navigating in a graph of protein families. Bioinform. Elon Portugaly, Ilona Kifer, Michal Linial
2002	J	`jnl`	The Advantage of Functional Prediction Based on Clustering of Yeast Genes and Its Correlation with Non-Sequence Based Classifications. J. Comput. Biol. Yonatan Bilu, Michal Linial
2002	A	`conf`	The metric space of proteins-comparative study of clustering algorithms. ISMB Ori Sasson, Nathan Linial, Michal Linial
2001	B	`conf`	On the predictive power of sequence similarity in yeast. RECOMB Yonatan Bilu, Michal Linial
2000	B	`conf`	Probabilities for having a new fold on the basis of a map of all protein sequences. RECOMB Elon Portugaly, Michal Linial
2000	J	`jnl`	ProtoMap: automatic classification of protein sequences and hierarchy of protein families. Nucleic Acids Res. Golan Yona, Nathan Linial, Michal Linial
2000	J	`jnl`	Using Bayesian Networks to Analyze Expression Data. J. Comput. Biol. Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er
2000	B	`conf`	Using Bayesian networks to analyze expression data. RECOMB Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er
1998	A	`conf`	A Map of the Protein Space: An Automatic Hierarchical Classification of all Protein Sequences. ISMB Golan Yona, Nathan Linial, Naftali Tishby, Michal Linial